RchiOBHm_Chr6g0283241

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
46454165 .. 46456866
2702 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25394

Sequence Viewer

Length: 402 bp
ATGTATATATGGAACAAATTATACATTACTGTTCATTCATGGAAGAAAAGACTATTTTGCCCTCATTTGACATTTTTTTACGGCTCTGCCACTGACCTATTTTTTCCCCTCTTCCAGACTGAGGCTTTTTGCTCTCCTTTCTTCTTTCTGCATCCTAAACTGCCTTCTTTCACTCCCTCAGATAGTCACCTCCTCAGCACCCTCTTCAACCGCGTCTTCATCGGAGATTCCAATTCCGGGTCGGGTTTTGTCTCCACAGGCCGGTCTATTTCAGTCACCAACAACAAAAGCCCACCTCCAAACTCACCCTCTCCTTACAACACAGCAAGAGTTTTCACCACTGCTTCAAGGTATAGCTTCAGCATCAAGAAAATGGGAACTCACTTGTTTTTGTGCGCGTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

133

Amino Acids

15.1

Weight (kDa)

9.76

Isoelectric Point (pI)

52.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 213, 398
AciI CCGC 1 cut(s) 211
AcuI CTGAAG 1 cut(s) 343
AfiI CCNNNNNNNGG 3 cut(s) 121, 237, 261
AgsI TTSAA 2 cut(s) 208, 348
AluBI AGCT 1 cut(s) 357
AluI AGCT 1 cut(s) 357
Alw26I GTCTC 1 cut(s) 256
AoxI GGCC 1 cut(s) 259
AspLEI GCGC 1 cut(s) 398
AsuC2I CCSGG 1 cut(s) 238
AsuHPI GGTGA 4 cut(s) 179, 268, 297, 328
BbsI GAAGAC 1 cut(s) 208
BbvCI CCTCAGC 1 cut(s) 194
BceAI ACGGC 1 cut(s) 97
BcnI CCSGG 1 cut(s) 238
BcoDI GTCTC 1 cut(s) 256
Bme1390I CCNGG 1 cut(s) 238
BmrFI CCNGG 1 cut(s) 238
BmsI GCATC 2 cut(s) 160, 372
BpiI GAAGAC 1 cut(s) 208
Bpu10I CCTNAGC 1 cut(s) 194
BpuMI CCSGG 1 cut(s) 238
Bsc4I CCNNNNNNNGG 3 cut(s) 121, 237, 261
Bse118I RCCGGY 1 cut(s) 261
BseGI GGATG 1 cut(s) 151
BseLI CCNNNNNNNGG 3 cut(s) 121, 237, 261
BseMII CTCAG 3 cut(s) 111, 192, 208
BseRI GAGGAG 1 cut(s) 182
Bsh1236I CGCG 2 cut(s) 213, 398
BshFI GGCC 1 cut(s) 261
BsiSI CCGG 2 cut(s) 237, 262
BslI CCNNNNNNNGG 3 cut(s) 121, 237, 261
BsmAI GTCTC 1 cut(s) 256
BsnI GGCC 1 cut(s) 261
BspACI CCGC 1 cut(s) 211
BspANI GGCC 1 cut(s) 261
BspCNI CTCAG 3 cut(s) 112, 191, 207
BspFNI CGCG 2 cut(s) 213, 398
BsrFI RCCGGY 1 cut(s) 261
BssAI RCCGGY 1 cut(s) 261
Bst4CI ACNGT 1 cut(s) 31
Bst6I CTCTTC 2 cut(s) 116, 209
BstDEI CTNAG 3 cut(s) 120, 178, 194
BstF5I GGATG 1 cut(s) 151
BstFNI CGCG 2 cut(s) 213, 398
BstHHI GCGC 1 cut(s) 398
BstMAI GTCTC 1 cut(s) 256
BstSCI CCNGG 1 cut(s) 236
BstUI CGCG 2 cut(s) 213, 398
BstV2I GAAGAC 1 cut(s) 208
BsuRI GGCC 1 cut(s) 261
BtsCI GGATG 1 cut(s) 151
BtsI GCAGTG 1 cut(s) 339
BtsIMutI CAGTG 2 cut(s) 90, 339
CfoI GCGC 1 cut(s) 398
Cfr10I RCCGGY 1 cut(s) 261
CseI GACGC 1 cut(s) 202
CviAII CATG 1 cut(s) 39
CviJI RGCY 5 cut(s) 84, 125, 261, 291, 357
CviKI_1 RGCY 5 cut(s) 84, 125, 261, 291, 357
DdeI CTNAG 3 cut(s) 120, 178, 194
Eam1104I CTCTTC 2 cut(s) 116, 209
EarI CTCTTC 2 cut(s) 116, 209
Eco57I CTGAAG 1 cut(s) 343
FaeI CATG 1 cut(s) 42
FaiI YATR 6 cut(s) 6, 8, 10, 22, 40, 354
FatI CATG 1 cut(s) 38
FokI GGATG 1 cut(s) 138
GlaI GCGC 1 cut(s) 397
HaeIII GGCC 1 cut(s) 261
HapII CCGG 2 cut(s) 237, 262
HgaI GACGC 1 cut(s) 202
HhaI GCGC 1 cut(s) 398
Hin1II CATG 1 cut(s) 42
Hin6I GCGC 1 cut(s) 396
HinP1I GCGC 1 cut(s) 396
HinfI GANTC 1 cut(s) 227
HpaII CCGG 2 cut(s) 237, 262
HphI GGTGA 4 cut(s) 179, 268, 297, 328
Hpy188I TCNGA 2 cut(s) 181, 224
Hpy188III TCNNGA 2 cut(s) 115, 367
HpyAV CCTTC 1 cut(s) 174
HpyCH4III ACNGT 1 cut(s) 31
HpyCH4V TGCA 1 cut(s) 151
HpyF3I CTNAG 3 cut(s) 120, 178, 194
Hsp92II CATG 1 cut(s) 42
HspAI GCGC 1 cut(s) 396
LpnPI CCDG 4 cut(s) 128, 243, 250, 275
LweI GCATC 2 cut(s) 160, 372
MaeIII GTNAC 2 cut(s) 185, 274
MboII GAAGA 5 cut(s) 55, 103, 133, 196, 208
MluCI AATT 2 cut(s) 17, 232
MnlI CCTC 9 cut(s) 72, 115, 119, 187, 200, 203, 212, 306, 319
MspI CCGG 2 cut(s) 237, 262
MspR9I CCNGG 1 cut(s) 238
MvnI CGCG 2 cut(s) 213, 398
NciI CCSGG 1 cut(s) 238
NlaIII CATG 1 cut(s) 42
NmuCI GTSAC 2 cut(s) 185, 274
PfeI GAWTC 1 cut(s) 227
PsrI GAACNNNNNNTAC 1 cut(s) 37
ScrFI CCNGG 1 cut(s) 238
SetI ASST 5 cut(s) 99, 192, 298, 353, 359
SfaNI GCATC 2 cut(s) 160, 372
Sse9I AATT 2 cut(s) 17, 232
SsiI CCGC 1 cut(s) 211
StyD4I CCNGG 1 cut(s) 236
TaaI ACNGT 1 cut(s) 31
TasI AATT 2 cut(s) 17, 232
TfiI GAWTC 1 cut(s) 227
TscAI CASTG 2 cut(s) 97, 346
TseFI GTSAC 2 cut(s) 185, 274
Tsp45I GTSAC 2 cut(s) 185, 274
TspDTI ATGAA 3 cut(s) 23, 27, 208
TspRI CASTG 2 cut(s) 97, 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.