Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0007188

Physical Location & Seq

Genomic Coordinates Reverse (-)

8868461 .. 8868769

Gene Structure 309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0113600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGCAGCAACGGCTTCCAGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGCGGGGCTGGCTGGAGGGAGGCCGGAGGCGTCCCAGACCTCTTCTGGGCGGCATTCGAGGTCGGAGGAGGTCGGGCTTGCCGGTTTCTGGGCAGTCACCTCACCTACAGTTGCAGGTTCTGTGCAGCACCGCAGAACCGTCGCCGGCGACTCCACCGTACCGCAGACCCCTCCGCACGACCCCCAGCGTCCCTCCGGCAAGCCGCGCCGCGCCGTCGCCGCTCGATCGAGGCCGGAGGAGCGACGTCCGCACTTTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

102

Amino Acids

10.5

Weight (kDa)

11.8

Isoelectric Point (pI)

87.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007188)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24010
fragaria_vesca	FvH4_7g30170
malus_domestica	MD01G1207700.v1.1 MD07G1278300.v1.1
prunus_persica	Prupe.2G300200_v2.0.a1
pyrus_communis	pycom01g21850 pycom07g25330
rosa_chinensis	RchiOBHm_Chr1g0359691 RchiOBHm_Chr1g0378221 RchiOBHm_Chr4g0438201 RchiOBHm_Chr6g0283241 RchiOBHm_Chr7g0214091
rosa_laevigata	RLG00000026460
rosa_multiflora	Rmu_sc0005657.1_g000022 Rmu_sc0038642.1_g000004
rosa_roxburghii	Rroxscaffold_2G00137220 Rroxscaffold_4G00280640
rosa_rugosa	Rorug01G0407100 Rorug07G0113600
rosa_samantha	Rh1AG422600 Rh1BG386500 Rh1CG056300 Rh1CG400100 Rh1DG417700
rosa_wichuraiana	Rw1G037480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	295
Acc36I	ACCTGC	1 cut(s)	152
AccBSI	CCGCTC	1 cut(s)	269
AccII	CGCG	3 cut(s)	50, 253, 258
AcyI	GRCGYC	2 cut(s)	77, 292
AfaI	GTAC	1 cut(s)	207
AfiI	CCNNNNNNNGG	3 cut(s)	23, 93, 135
AjnI	CCWGG	1 cut(s)	16
AlwNI	CAGNNNCTG	1 cut(s)	167
AoxI	GGCC	2 cut(s)	68, 278
ApeKI	GCWGC	2 cut(s)	4, 172
AspLEI	GCGC	3 cut(s)	50, 255, 260
AsuHPI	GGTGA	2 cut(s)	136, 141
BbvI	GCAGC	2 cut(s)	16, 184
BceAI	ACGGC	2 cut(s)	26, 245
BcgI	CGANNNNNNTGC	2 cut(s)	169, 203
BciT130I	CCWGG	1 cut(s)	18
BfaI	CTAG	1 cut(s)	307
BfmI	CTRYAG	1 cut(s)	153
BfuAI	ACCTGC	1 cut(s)	152
Bme1390I	CCNGG	1 cut(s)	18
BmrFI	CCNGG	1 cut(s)	18
BpmI	CTGGAG	1 cut(s)	81
BsaHI	GRCGYC	2 cut(s)	77, 292
Bsc4I	CCNNNNNNNGG	3 cut(s)	23, 93, 135
Bse118I	RCCGGY	2 cut(s)	128, 191
BseBI	CCWGG	1 cut(s)	18
BseLI	CCNNNNNNNGG	3 cut(s)	23, 93, 135
BseRI	GAGGAG	2 cut(s)	128, 299
BseXI	GCAGC	2 cut(s)	16, 184
BseYI	CCCAGC	1 cut(s)	231
BsgI	GTGCAG	1 cut(s)	191
Bsh1236I	CGCG	3 cut(s)	50, 253, 258
Bsh1285I	CGRYCG	1 cut(s)	275
BshFI	GGCC	2 cut(s)	70, 280
BsiEI	CGRYCG	1 cut(s)	275
BsiSI	CCGG	5 cut(s)	71, 129, 192, 243, 281
BslFI	GGGAC	2 cut(s)	64, 222
BslI	CCNNNNNNNGG	3 cut(s)	23, 93, 135
BsmFI	GGGAC	2 cut(s)	64, 222
BsmI	GAATGC	1 cut(s)	100
BsnI	GGCC	2 cut(s)	70, 280
Bsp143I	GATC	1 cut(s)	272
BspANI	GGCC	2 cut(s)	70, 280
BspFNI	CGCG	3 cut(s)	50, 253, 258
BspMI	ACCTGC	1 cut(s)	152
BsrBI	CCGCTC	1 cut(s)	269
BsrFI	RCCGGY	2 cut(s)	128, 191
BssAI	RCCGGY	2 cut(s)	128, 191
BssMI	GATC	1 cut(s)	272
BssNI	GRCGYC	2 cut(s)	77, 292
Bst2UI	CCWGG	1 cut(s)	18
Bst4CI	ACNGT	3 cut(s)	157, 187, 205
Bst6I	CTCTTC	1 cut(s)	94
BstACI	GRCGYC	2 cut(s)	77, 292
BstC8I	GCNNGC	4 cut(s)	57, 126, 193, 248
BstFNI	CGCG	3 cut(s)	50, 253, 258
BstHHI	GCGC	3 cut(s)	50, 255, 260
BstKTI	GATC	1 cut(s)	275
BstMBI	GATC	1 cut(s)	272
BstMCI	CGRYCG	1 cut(s)	275
BstNI	CCWGG	1 cut(s)	18
BstSCI	CCNGG	1 cut(s)	16
BstSFI	CTRYAG	1 cut(s)	153
BstUI	CGCG	3 cut(s)	50, 253, 258
BstV1I	GCAGC	2 cut(s)	16, 184
BsuRI	GGCC	2 cut(s)	70, 280
BveI	ACCTGC	1 cut(s)	152
Cac8I	GCNNGC	4 cut(s)	57, 126, 193, 248
CaiI	CAGNNNCTG	1 cut(s)	167
CfoI	GCGC	3 cut(s)	50, 255, 260
Cfr10I	RCCGGY	2 cut(s)	128, 191
CseI	GACGC	2 cut(s)	66, 224
Csp6I	GTAC	1 cut(s)	206
CviJI	RGCY	7 cut(s)	13, 55, 59, 70, 124, 250, 280
CviKI_1	RGCY	7 cut(s)	13, 55, 59, 70, 124, 250, 280
CviQI	GTAC	1 cut(s)	206
DpnI	GATC	1 cut(s)	274
DpnII	GATC	1 cut(s)	272
Eam1104I	CTCTTC	1 cut(s)	94
EarI	CTCTTC	1 cut(s)	94
EcoRII	CCWGG	1 cut(s)	16
FaqI	GGGAC	2 cut(s)	64, 222
FauI	CCCGC	1 cut(s)	43
FspBI	CTAG	1 cut(s)	307
GlaI	GCGC	3 cut(s)	49, 254, 259
GsaI	CCCAGC	1 cut(s)	235
GsuI	CTGGAG	1 cut(s)	81
HaeIII	GGCC	2 cut(s)	70, 280
HapII	CCGG	5 cut(s)	71, 129, 192, 243, 281
HgaI	GACGC	2 cut(s)	66, 224
HhaI	GCGC	3 cut(s)	50, 255, 260
Hin1I	GRCGYC	2 cut(s)	77, 292
Hin6I	GCGC	3 cut(s)	48, 253, 258
HinP1I	GCGC	3 cut(s)	48, 253, 258
HinfI	GANTC	1 cut(s)	197
HpaII	CCGG	5 cut(s)	71, 129, 192, 243, 281
HphI	GGTGA	2 cut(s)	136, 141
Hpy188I	TCNGA	1 cut(s)	112
Hpy99I	CGWCG	3 cut(s)	191, 266, 294
HpyCH4III	ACNGT	3 cut(s)	157, 187, 205
HpyCH4IV	ACGT	1 cut(s)	292
HpyCH4V	TGCA	3 cut(s)	4, 161, 172
HpySE526I	ACGT	1 cut(s)	292
Hsp92I	GRCGYC	2 cut(s)	77, 292
HspAI	GCGC	3 cut(s)	48, 253, 258
KroI	GCCGGC	1 cut(s)	191
KroNI	GCCGGC	1 cut(s)	193
Kzo9I	GATC	1 cut(s)	272
LmnI	GCTCC	1 cut(s)	286
Lsp1109I	GCAGC	2 cut(s)	16, 184
MaeI	CTAG	1 cut(s)	307
MaeII	ACGT	1 cut(s)	292
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	1 cut(s)	274
MbiI	CCGCTC	1 cut(s)	269
MboI	GATC	1 cut(s)	272
MboII	GAAGA	1 cut(s)	81
MlyI	GAGTC	1 cut(s)	191
MmeI	TCCRAC	1 cut(s)	90
MreI	CGCCGGCG	1 cut(s)	191
MroNI	GCCGGC	1 cut(s)	191
MspI	CCGG	5 cut(s)	71, 129, 192, 243, 281
MspR9I	CCNGG	1 cut(s)	18
MteI	GCGCNGCGC	1 cut(s)	256
Mva1269I	GAATGC	1 cut(s)	100
MvaI	CCWGG	1 cut(s)	18
MvnI	CGCG	3 cut(s)	50, 253, 258
NaeI	GCCGGC	1 cut(s)	193
NdeII	GATC	1 cut(s)	272
NgoMIV	GCCGGC	1 cut(s)	191
NmuCI	GTSAC	1 cut(s)	142
PctI	GAATGC	1 cut(s)	100
PdiI	GCCGGC	1 cut(s)	193
Ple19I	CGATCG	1 cut(s)	275
PleI	GAGTC	1 cut(s)	191
PpsI	GAGTC	1 cut(s)	191
Psp6I	CCWGG	1 cut(s)	16
PspFI	CCCAGC	1 cut(s)	231
PspGI	CCWGG	1 cut(s)	16
PstNI	CAGNNNCTG	1 cut(s)	167
PvuI	CGATCG	1 cut(s)	275
RsaI	GTAC	1 cut(s)	207
RsaNI	GTAC	1 cut(s)	206
Sau3AI	GATC	1 cut(s)	272
SchI	GAGTC	1 cut(s)	191
ScrFI	CCNGG	1 cut(s)	18
SetI	ASST	7 cut(s)	89, 110, 120, 149, 154, 166, 295
SfcI	CTRYAG	1 cut(s)	153
SgrAI	CRCCGGYG	1 cut(s)	191
SspMI	CTAG	1 cut(s)	307
StyD4I	CCNGG	1 cut(s)	16
TaaI	ACNGT	3 cut(s)	157, 187, 205
TaiI	ACGT	1 cut(s)	295
TaqI	TCGA	3 cut(s)	104, 271, 275
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	2 cut(s)	4, 172
Tsp45I	GTSAC	1 cut(s)	142
XcmI	CCANNNNNNNNNTGG	1 cut(s)	89
XspI	CTAG	1 cut(s)	307
ZraI	GACGTC	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.