Rorug01G0407100

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0007188
Physical Location & Seq
Forward (+)
51361862 .. 51363948
2087 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0407100.1

Sequence Viewer

Length: 1443 bp
ATGGAAGATCTCTCGTTGATGATACTAGTTTTGACCCTCATATCACTTTTTTCTGGGTATTTTATCAAGTTTAAAACATCACTAGGGAAGAAACTTCCACCAGGGTCATTTGGTATTCCGTTAATTGGAGAGTCCATAAGCTTCATCCGAGCACAAAAACAGGACGGATCCGATGAGTGGATCCGGTCCCGTATCCGCAAGTACGGACCCGTCTTCAAGACCTCGCTCATGGGGTCTAAAACGGTGGTTATAACTGGCCAAGCTGGAAACCGGTTTGTGTTTGGTGGAGGTGACACTGGTATTGGAGGCAACCAAGTAGCAACTGTAGCCAGAATTCTCGGAAAGCACAGCATATTTGAGATTTCTGGGTTTAGGCACAAGCTTGTGAGGAGTGCCATAACCAACTTCCTAAAGCCAGAAAACATTCAAAGAATTGTAGGCGAAATCGATTTGTTAGTCAAAGACCAAATTTTCAAGGAACTCGATGGCAAGGATGTAGTACAATTAGTGCCTTTGGTGAAGAGATTAACATTCAAGGTTACTTGCAGTTTGTTTTTTGGACTACCAGAAGGCAAAGACAAAGATACATTGTTTGAAGACTTTACTATTGCCATCAAGGGTCTGTGGGCAATTCCATTAAACCTTCTAGGCACTCAATTTTACAAAGCAGTGCAAGCACGTGGCAGGATAGCCAAGCTCCTCACCAAGCTCATGAAGGAAAAGAAGAATGAGGCAACAAAAATGACCCCCCAGAACAATGACATCATCTCAGCCCTGCTTCTTCTGAGAGATGAAGTTGGTAAGCCTCTGCAAGAGCAAGAGATTGTTGATAATCTCATCACTGTGATAGTTGCTAGCCATGACACCACCTCAATTCTCCTGAGCCTCCTTTTAAGGCATCTTTCTACAGATTCCAAGATTTTCACTGAGGTCCTTCAAGAGCAAAAAGAAGTAGTTAAAGCTGTTGAAGGAAGCGAAAGAAAGGTTATTACATGGAATGAAATCCAAATGATGAAGCACACATGGAGAGTGGCCCAAGAGCTCATGAGGATGACTCCCCCCGCTTTTGGTAACTTCAAATGTGCATGGAGAGATACTAACTTCGATGGCTATGATATCCCCAAGGGATGGAAGGTTTTCTGGGTGGCATCTGGTACACACATGGACAGCAACATATTTGAAGATCCAAACAGGTTTGATCCATCGCGATTCGAGAACTCAACGAAATCATTTCCTCCGTACACATACATTGCATTCGGAGCAGGCCCGCGAATTTGTCCCGGGGCAGAATTTGCAAGGATTGAAGTGCTGTTAACGATTCATCATTTGTTAACAAAGTACTCATGGACGCAGATGATCAAGGACGAGCCTTTAAGACGTGAACCCTTGCCTTATCCAGCCATGGGACTTCCGGTCAAACTTCACCAAAGGAACGATATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0044464 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like Pkinase_Tyr

Protein Analysis

480

Amino Acids

54.29

Weight (kDa)

9.42

Isoelectric Point (pI)

26.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 33 - 462 6e-63 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 251
AccB7I CCANNNNNTGG 1 cut(s) 1128
AccII CGCG 2 cut(s) 1207, 1270
AciI CCGC 3 cut(s) 196, 1062, 1268
AclWI GGATC 6 cut(s) 162, 175, 175, 188, 1178, 1193
AcoI YGGCCR 1 cut(s) 256
AcsI RAATTY 4 cut(s) 333, 468, 1272, 1289
AcvI CACGTG 1 cut(s) 680
AfaI GTAC 5 cut(s) 203, 501, 1156, 1241, 1340
AfiI CCNNNNNNNGG 5 cut(s) 125, 177, 1067, 1128, 1403
AgeI ACCGGT 1 cut(s) 270
AhdI GACNNNNNGTC 1 cut(s) 1412
AhlI ACTAGT 1 cut(s) 25
AjiI CACGTC 1 cut(s) 1379
AjnI CCWGG 1 cut(s) 100
AluBI AGCT 7 cut(s) 141, 263, 382, 697, 709, 962, 1042
AluI AGCT 7 cut(s) 141, 263, 382, 697, 709, 962, 1042
Alw21I GWGCWC 2 cut(s) 154, 1044
AlwI GGATC 6 cut(s) 162, 175, 175, 188, 1178, 1193
Ama87I CYCGRG 1 cut(s) 1280
AoxI GGCC 3 cut(s) 256, 1032, 1264
ApoI RAATTY 4 cut(s) 333, 468, 1272, 1289
AsiGI ACCGGT 1 cut(s) 270
Asp700I GAANNNNTTC 2 cut(s) 423, 1136
AspS9I GGNCC 5 cut(s) 186, 206, 931, 1033, 1265
AsuC2I CCSGG 2 cut(s) 1281, 1282
AsuHPI GGTGA 4 cut(s) 302, 529, 694, 1415
AsuNHI GCTAGC 1 cut(s) 854
AvaI CYCGRG 1 cut(s) 1280
AvaII GGWCC 3 cut(s) 186, 206, 931
BalI TGGCCA 1 cut(s) 258
BamHI GGATCC 2 cut(s) 167, 180
BanII GRGCYC 1 cut(s) 1044
BbrPI CACGTG 1 cut(s) 680
BbsI GAAGAC 2 cut(s) 205, 603
Bbv12I GWGCWC 2 cut(s) 154, 1044
BccI CCATC 5 cut(s) 479, 620, 1100, 1122, 1210
BciT130I CCWGG 1 cut(s) 102
BciVI GTATCC 1 cut(s) 203
BclI TGATCA 1 cut(s) 1356
BcnI CCSGG 2 cut(s) 1281, 1282
BcuI ACTAGT 1 cut(s) 25
BfaI CTAG 4 cut(s) 26, 83, 647, 855
BfmI CTRYAG 2 cut(s) 324, 906
BfuI GTATCC 1 cut(s) 203
BglII AGATCT 1 cut(s) 7
BmcAI AGTACT 1 cut(s) 1340
Bme1390I CCNGG 3 cut(s) 102, 1281, 1282
Bme18I GGWCC 3 cut(s) 186, 206, 931
BmeRI GACNNNNNGTC 1 cut(s) 1412
BmeT110I CYCGRG 1 cut(s) 1280
BmgBI CACGTC 1 cut(s) 1379
BmgT120I GGNCC 5 cut(s) 186, 206, 931, 1033, 1265
BmiI GGNNCC 4 cut(s) 169, 182, 188, 208
BmrFI CCNGG 3 cut(s) 102, 1281, 1282
BmsI GCATC 2 cut(s) 907, 1157
BmtI GCTAGC 1 cut(s) 858
BpiI GAAGAC 2 cut(s) 205, 603
BplI GAGNNNNNCTC 2 cut(s) 1039, 1071
Bpu10I CCTNAGC 1 cut(s) 881
BpuMI CCSGG 2 cut(s) 1281, 1282
Bsa29I ATCGAT 1 cut(s) 447
BsaAI YACGTR 1 cut(s) 680
BsaJI CCNNGG 5 cut(s) 101, 1122, 1280, 1281, 1401
BsaWI WCCGGW 3 cut(s) 183, 270, 1411
Bsc4I CCNNNNNNNGG 5 cut(s) 125, 177, 1067, 1128, 1403
Bse118I RCCGGY 1 cut(s) 270
Bse1I ACTGG 2 cut(s) 259, 301
Bse3DI GCAATG 1 cut(s) 1248
BseBI CCWGG 1 cut(s) 102
BseCI ATCGAT 1 cut(s) 447
BseDI CCNNGG 5 cut(s) 101, 1122, 1280, 1281, 1401
BseGI GGATG 4 cut(s) 144, 499, 1056, 1133
BseLI CCNNNNNNNGG 5 cut(s) 125, 177, 1067, 1128, 1403
BseMI GCAATG 1 cut(s) 1248
BseMII CTCAG 4 cut(s) 776, 783, 872, 918
BseNI ACTGG 2 cut(s) 259, 301
BseRI GAGGAG 2 cut(s) 403, 689
Bsh1236I CGCG 2 cut(s) 1207, 1270
BshFI GGCC 3 cut(s) 258, 1034, 1266
BshTI ACCGGT 1 cut(s) 270
BshVI ATCGAT 1 cut(s) 447
BsiHKAI GWGCWC 2 cut(s) 154, 1044
BsiHKCI CYCGRG 1 cut(s) 1280
BsiSI CCGG 4 cut(s) 184, 271, 1281, 1412
BslFI GGGAC 3 cut(s) 172, 1263, 1419
BslI CCNNNNNNNGG 5 cut(s) 125, 177, 1067, 1128, 1403
BsmFI GGGAC 3 cut(s) 172, 1263, 1419
BsmI GAATGC 1 cut(s) 1253
BsnI GGCC 3 cut(s) 258, 1034, 1266
BsoBI CYCGRG 1 cut(s) 1280
Bsp1286I GDGCHC 2 cut(s) 154, 1044
Bsp143I GATC 6 cut(s) 7, 167, 180, 1183, 1198, 1356
Bsp19I CCATGG 1 cut(s) 1401
Bsp68I TCGCGA 1 cut(s) 1207
BspACI CCGC 3 cut(s) 196, 1062, 1268
BspANI GGCC 3 cut(s) 258, 1034, 1266
BspCNI CTCAG 4 cut(s) 777, 782, 873, 919
BspDI ATCGAT 1 cut(s) 447
BspFNI CGCG 2 cut(s) 1207, 1270
BspHI TCATGA 2 cut(s) 711, 1044
BspLI GGNNCC 4 cut(s) 169, 182, 188, 208
BspOI GCTAGC 1 cut(s) 858
BspPI GGATC 6 cut(s) 162, 175, 175, 188, 1178, 1193
BsrDI GCAATG 1 cut(s) 1248
BsrFI RCCGGY 1 cut(s) 270
BsrI ACTGG 2 cut(s) 259, 301
BssAI RCCGGY 1 cut(s) 270
BssECI CCNNGG 5 cut(s) 101, 1122, 1280, 1281, 1401
BssMI GATC 6 cut(s) 7, 167, 180, 1183, 1198, 1356
BssT1I CCWWGG 2 cut(s) 1122, 1401
Bst2UI CCWGG 1 cut(s) 102
Bst4CI ACNGT 3 cut(s) 244, 325, 844
Bst6I CTCTTC 1 cut(s) 515
BstAPI GCANNNNNTGC 1 cut(s) 1292
BstBAI YACGTR 1 cut(s) 680
BstC8I GCNNGC 4 cut(s) 675, 856, 1264, 1268
BstDEI CTNAG 4 cut(s) 769, 785, 881, 927
BstDSI CCRYGG 1 cut(s) 1401
BstF5I GGATG 4 cut(s) 144, 499, 1056, 1133
BstFNI CGCG 2 cut(s) 1207, 1270
BstKTI GATC 6 cut(s) 10, 170, 183, 1186, 1201, 1359
BstMBI GATC 6 cut(s) 7, 167, 180, 1183, 1198, 1356
BstMWI GCNNNNNNNGC 4 cut(s) 326, 674, 1259, 1292
BstNI CCWGG 1 cut(s) 102
BstSCI CCNGG 3 cut(s) 100, 1279, 1280
BstSFI CTRYAG 2 cut(s) 324, 906
BstUI CGCG 2 cut(s) 1207, 1270
BstV2I GAAGAC 2 cut(s) 205, 603
BstX2I RGATCY 4 cut(s) 7, 167, 180, 1183
BstYI RGATCY 4 cut(s) 7, 167, 180, 1183
Bsu15I ATCGAT 1 cut(s) 447
BsuI GTATCC 1 cut(s) 203
BsuRI GGCC 3 cut(s) 258, 1034, 1266
BsuTUI ATCGAT 1 cut(s) 447
BtgI CCRYGG 1 cut(s) 1401
BtgZI GCGATG 1 cut(s) 1188
BtrI CACGTC 1 cut(s) 1379
BtsCI GGATG 4 cut(s) 144, 499, 1056, 1133
BtsI GCAGTG 1 cut(s) 675
BtsIMutI CAGTG 4 cut(s) 294, 675, 840, 924
BtuMI TCGCGA 1 cut(s) 1207
Cac8I GCNNGC 4 cut(s) 675, 856, 1264, 1268
CciI TCATGA 2 cut(s) 711, 1044
Cfr10I RCCGGY 1 cut(s) 270
Cfr13I GGNCC 5 cut(s) 186, 206, 931, 1033, 1265
Cfr9I CCCGGG 1 cut(s) 1280
ClaI ATCGAT 1 cut(s) 447
CseI GACGC 1 cut(s) 1357
Csp6I GTAC 5 cut(s) 202, 500, 1155, 1240, 1339
CspAI ACCGGT 1 cut(s) 270
CviQI GTAC 5 cut(s) 202, 500, 1155, 1240, 1339
DdeI CTNAG 4 cut(s) 769, 785, 881, 927
DpnI GATC 6 cut(s) 9, 169, 182, 1185, 1200, 1358
DpnII GATC 6 cut(s) 7, 167, 180, 1183, 1198, 1356
DraI TTTAAA 1 cut(s) 73
DriI GACNNNNNGTC 1 cut(s) 1412
EaeI YGGCCR 1 cut(s) 256
Eam1104I CTCTTC 1 cut(s) 515
Eam1105I GACNNNNNGTC 1 cut(s) 1412
EarI CTCTTC 1 cut(s) 515
Ecl136II GAGCTC 1 cut(s) 1042
Eco130I CCWWGG 2 cut(s) 1122, 1401
Eco24I GRGCYC 1 cut(s) 1044
Eco32I GATATC 1 cut(s) 1117
Eco47I GGWCC 3 cut(s) 186, 206, 931
Eco53kI GAGCTC 1 cut(s) 1042
Eco72I CACGTG 1 cut(s) 680
Eco88I CYCGRG 1 cut(s) 1280
EcoICRI GAGCTC 1 cut(s) 1042
EcoO109I RGGNCCY 1 cut(s) 931
EcoRI GAATTC 1 cut(s) 333
EcoRII CCWGG 1 cut(s) 100
EcoRV GATATC 1 cut(s) 1117
EcoT14I CCWWGG 2 cut(s) 1122, 1401
EcoT38I GRGCYC 1 cut(s) 1044
ErhI CCWWGG 2 cut(s) 1122, 1401
FaqI GGGAC 3 cut(s) 172, 1263, 1419
FauI CCCGC 2 cut(s) 1069, 1275
FbaI TGATCA 1 cut(s) 1356
FokI GGATG 4 cut(s) 131, 506, 1063, 1140
FriOI GRGCYC 1 cut(s) 1044
FspBI CTAG 4 cut(s) 26, 83, 647, 855
HaeIII GGCC 3 cut(s) 258, 1034, 1266
HapII CCGG 4 cut(s) 184, 271, 1281, 1412
HgaI GACGC 1 cut(s) 1357
HincII GTYRAC 2 cut(s) 1314, 1332
HindII GTYRAC 2 cut(s) 1314, 1332
HindIII AAGCTT 2 cut(s) 139, 380
HinfI GANTC 5 cut(s) 131, 911, 1054, 1209, 1318
HpaI GTTAAC 2 cut(s) 1314, 1332
HpaII CCGG 4 cut(s) 184, 271, 1281, 1412
HphI GGTGA 4 cut(s) 302, 529, 694, 1415
Hpy166II GTNNAC 5 cut(s) 1157, 1242, 1314, 1332, 1382
Hpy188I TCNGA 5 cut(s) 149, 172, 341, 786, 1259
Hpy188III TCNNGA 7 cut(s) 217, 712, 880, 938, 1045, 1206, 1213
Hpy8I GTNNAC 5 cut(s) 1157, 1242, 1314, 1332, 1382
HpyAV CCTTC 6 cut(s) 563, 653, 709, 944, 962, 1126
HpyCH4III ACNGT 3 cut(s) 244, 325, 844
HpyCH4IV ACGT 2 cut(s) 679, 1378
HpyCH4V TGCA 6 cut(s) 546, 673, 811, 1085, 1253, 1295
HpyF10VI GCNNNNNNNGC 4 cut(s) 326, 674, 1259, 1292
HpyF3I CTNAG 4 cut(s) 769, 785, 881, 927
HpySE526I ACGT 2 cut(s) 679, 1378
Ksp22I TGATCA 1 cut(s) 1356
KspAI GTTAAC 2 cut(s) 1314, 1332
Kzo9I GATC 6 cut(s) 7, 167, 180, 1183, 1198, 1356
LmnI GCTCC 2 cut(s) 702, 1259
LweI GCATC 2 cut(s) 907, 1157
MaeI CTAG 4 cut(s) 26, 83, 647, 855
MaeII ACGT 2 cut(s) 679, 1378
MaeIII GTNAC 3 cut(s) 290, 538, 1070
MalI GATC 6 cut(s) 9, 169, 182, 1185, 1200, 1358
MboI GATC 6 cut(s) 7, 167, 180, 1183, 1198, 1356
MboII GAAGA 8 cut(s) 17, 100, 205, 532, 608, 736, 773, 1193
MflI RGATCY 4 cut(s) 7, 167, 180, 1183
MhlI GDGCHC 2 cut(s) 154, 1044
MlsI TGGCCA 1 cut(s) 258
MluNI TGGCCA 1 cut(s) 258
MlyI GAGTC 2 cut(s) 140, 1048
Mox20I TGGCCA 1 cut(s) 258
MroXI GAANNNNTTC 2 cut(s) 423, 1136
MscI TGGCCA 1 cut(s) 258
MseI TTAA 9 cut(s) 72, 122, 527, 638, 893, 957, 1313, 1331, 1373
MslI CAYNNNNRTG 2 cut(s) 842, 1049
Msp20I TGGCCA 1 cut(s) 258
MspI CCGG 4 cut(s) 184, 271, 1281, 1412
MspR9I CCNGG 3 cut(s) 102, 1281, 1282
Mva1269I GAATGC 1 cut(s) 1253
MvaI CCWGG 1 cut(s) 102
MvnI CGCG 2 cut(s) 1207, 1270
MwoI GCNNNNNNNGC 4 cut(s) 326, 674, 1259, 1292
NciI CCSGG 2 cut(s) 1281, 1282
NcoI CCATGG 1 cut(s) 1401
NdeII GATC 6 cut(s) 7, 167, 180, 1183, 1198, 1356
NheI GCTAGC 1 cut(s) 854
NlaIV GGNNCC 4 cut(s) 169, 182, 188, 208
NmuCI GTSAC 1 cut(s) 290
NruI TCGCGA 1 cut(s) 1207
PagI TCATGA 2 cut(s) 711, 1044
PctI GAATGC 1 cut(s) 1253
PdmI GAANNNNTTC 2 cut(s) 423, 1136
PfeI GAWTC 3 cut(s) 911, 1209, 1318
PflMI CCANNNNNTGG 1 cut(s) 1128
PinAI ACCGGT 1 cut(s) 270
PleI GAGTC 2 cut(s) 139, 1048
PmaCI CACGTG 1 cut(s) 680
PmlI CACGTG 1 cut(s) 680
PpsI GAGTC 2 cut(s) 139, 1048
Ppu21I YACGTR 1 cut(s) 680
PpuMI RGGWCCY 1 cut(s) 931
PsiI TTATAA 1 cut(s) 251
Psp124BI GAGCTC 1 cut(s) 1044
Psp5II RGGWCCY 1 cut(s) 931
Psp6I CCWGG 1 cut(s) 100
PspCI CACGTG 1 cut(s) 680
PspGI CCWGG 1 cut(s) 100
PspN4I GGNNCC 4 cut(s) 169, 182, 188, 208
PspPI GGNCC 5 cut(s) 186, 206, 931, 1033, 1265
PspPPI RGGWCCY 1 cut(s) 931
PsuI RGATCY 4 cut(s) 7, 167, 180, 1183
RruI TCGCGA 1 cut(s) 1207
RsaI GTAC 5 cut(s) 203, 501, 1156, 1241, 1340
RsaNI GTAC 5 cut(s) 202, 500, 1155, 1240, 1339
RseI CAYNNNNRTG 2 cut(s) 842, 1049
SacI GAGCTC 1 cut(s) 1044
SaqAI TTAA 9 cut(s) 72, 122, 527, 638, 893, 957, 1313, 1331, 1373
Sau3AI GATC 6 cut(s) 7, 167, 180, 1183, 1198, 1356
Sau96I GGNCC 5 cut(s) 186, 206, 931, 1033, 1265
ScaI AGTACT 1 cut(s) 1340
SchI GAGTC 2 cut(s) 140, 1048
ScrFI CCNGG 3 cut(s) 102, 1281, 1282
SduI GDGCHC 2 cut(s) 154, 1044
SfaNI GCATC 2 cut(s) 907, 1157
SfcI CTRYAG 2 cut(s) 324, 906
SinI GGWCC 3 cut(s) 186, 206, 931
SmaI CCCGGG 1 cut(s) 1282
SmiMI CAYNNNNRTG 2 cut(s) 842, 1049
SpeI ACTAGT 1 cut(s) 25
SsiI CCGC 3 cut(s) 196, 1062, 1268
SspMI CTAG 4 cut(s) 26, 83, 647, 855
SstI GAGCTC 1 cut(s) 1044
StyD4I CCNGG 3 cut(s) 100, 1279, 1280
StyI CCWWGG 2 cut(s) 1122, 1401
TaaI ACNGT 3 cut(s) 244, 325, 844
TaiI ACGT 2 cut(s) 682, 1381
TaqI TCGA 4 cut(s) 447, 483, 1104, 1212
TatI WGTACW 2 cut(s) 499, 1338
TfiI GAWTC 3 cut(s) 911, 1209, 1318
Tru1I TTAA 9 cut(s) 72, 122, 527, 638, 893, 957, 1313, 1331, 1373
Tru9I TTAA 9 cut(s) 72, 122, 527, 638, 893, 957, 1313, 1331, 1373
TscAI CASTG 4 cut(s) 301, 675, 847, 931
TseFI GTSAC 1 cut(s) 290
Tsp45I GTSAC 1 cut(s) 290
TspDTI ATGAA 6 cut(s) 133, 728, 807, 1014, 1028, 1310
TspGWI ACGGA 4 cut(s) 108, 180, 219, 1227
TspMI CCCGGG 1 cut(s) 1280
TspRI CASTG 4 cut(s) 301, 675, 847, 931
Van91I CCANNNNNTGG 1 cut(s) 1128
VpaK11BI GGWCC 3 cut(s) 186, 206, 931
XapI RAATTY 4 cut(s) 333, 468, 1272, 1289
XmaI CCCGGG 1 cut(s) 1280
XmnI GAANNNNTTC 2 cut(s) 423, 1136
XspI CTAG 4 cut(s) 26, 83, 647, 855
ZrmI AGTACT 1 cut(s) 1340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.