Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005657.1

Orthogroup ID

OG0007188

Physical Location & Seq

Genomic Coordinates Reverse (-)

114267 .. 122402

Gene Structure 8136 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005657.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1383 bp

atgaagaaagagttagatgctattcatgctaaagacgtctctcaaggtggattgactcaagggcaacaaactcagattgcgcgaaatgaacaaagaacaaaacagattctggaagagcttgaaaatttggaagagacgctgaatgagagtattcgagaaagtttaggtgcacgtgttgggaagctatctcatggtaagaagaaaggagcaattgaagaagaagaagagcttttgagagaattgcagctgcacattttggaacttgctgatattcttgtggagagaccatcacaatatgcaagaagagtggaagaaatatctcttacattcaagaacttgcatcatcttctgaactcattgcggccccatcaggctatggcaacactaattcacattctagaacttgagataaaacgacgtaaacaagctgttgaggatataatgagtactgttcattcatggagaaaaagacgattctgccctcatttggattttttttacgcctctgccactggcctattttttttcctctctcttcttccagaagcctcccataccgactttgtttgctcccagaagcctcctttcactccctcagacgactgcctcctcaactgcggctcttcctccaacgccaccttcttcaaccacttcttcatcggagatttcaattccgggttgggttttgtctccacaggccggtctatttcagtcaccaacaacaaaatcccacctccaaactcaccctctccttaccacacagcaagagttctcaccactgcttcaagctatagcttaagcattaggaaaattggaactcacttggtaagttttcattcctcaccgttttcggctcagggttttaatttggttgaaaactcgatagttggttttgtagtcattcgtcaaggagcggttcaaatcggattgggctttgcggaaaacaaaagaaggcttgctattgttctgtttattcttctgaggaagttcataataggaagttgtgatacaaagctcctagaactgctggattgtagagattgctcaactcttgggcgtttcaataggcgtggtcaggtgttacttgccactgtaaatgaacaaacaattgtaccttttgttagtgctcagttaaacaatttcggactcgcagttagtcttgccagaagaggaaatcttcctggtgctgaagacttggttgtccagcagatgacaaagttactagatgaagaaattgaagaggatgagatgttctggaatcaggaggctcttaaagaggaggaagaagatgataactatgaagtggagctgaaagttactgatttgtttgataatgactttgttaaagatcatctttcagtcatgcagaaacaaagatgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

460

Amino Acids

52.03

Weight (kDa)

5.88

Isoelectric Point (pI)

55.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007188)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24010
fragaria_vesca	FvH4_7g30170
malus_domestica	MD01G1207700.v1.1 MD07G1278300.v1.1
prunus_persica	Prupe.2G300200_v2.0.a1
pyrus_communis	pycom01g21850 pycom07g25330
rosa_chinensis	RchiOBHm_Chr1g0359691 RchiOBHm_Chr1g0378221 RchiOBHm_Chr4g0438201 RchiOBHm_Chr6g0283241 RchiOBHm_Chr7g0214091
rosa_laevigata	RLG00000026460
rosa_multiflora	Rmu_sc0005657.1_g000022 Rmu_sc0038642.1_g000004
rosa_roxburghii	Rroxscaffold_2G00137220 Rroxscaffold_4G00280640
rosa_rugosa	Rorug01G0407100 Rorug07G0113600
rosa_samantha	Rh1AG422600 Rh1BG386500 Rh1CG056300 Rh1CG400100 Rh1DG417700
rosa_wichuraiana	Rw1G037480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1199
AatII	GACGTC	1 cut(s)	39
AccBSI	CCGCTC	1 cut(s)	914
AccII	CGCG	1 cut(s)	82
AciI	CCGC	4 cut(s)	361, 618, 914, 938
AcsI	RAATTY	1 cut(s)	124
AcuI	CTGAAG	1 cut(s)	1209
AcvI	CACGTG	1 cut(s)	173
AcyI	GRCGYC	1 cut(s)	36
AfaI	GTAC	2 cut(s)	448, 1113
AfiI	CCNNNNNNNGG	2 cut(s)	487, 699
AflII	CTTAAG	1 cut(s)	796
AflIII	ACRYGT	1 cut(s)	172
AjnI	CCWGG	1 cut(s)	1180
AjuI	GAANNNNNNNTTGG	2 cut(s)	623, 655
AloI	GAACNNNNNNTCC	2 cut(s)	1235, 1267
AluBI	AGCT	9 cut(s)	118, 184, 229, 247, 428, 789, 795, 1015, 1309
AluI	AGCT	9 cut(s)	118, 184, 229, 247, 428, 789, 795, 1015, 1309
Alw21I	GWGCWC	2 cut(s)	172, 1129
Alw26I	GTCTC	4 cut(s)	43, 128, 277, 694
Alw44I	GTGCAC	1 cut(s)	168
AlwNI	CAGNNNCTG	1 cut(s)	109
AoxI	GGCC	3 cut(s)	362, 514, 697
ApaLI	GTGCAC	1 cut(s)	168
ApeKI	GCWGC	2 cut(s)	244, 247
ApoI	RAATTY	1 cut(s)	124
AspLEI	GCGC	1 cut(s)	82
AspS9I	GGNCC	1 cut(s)	363
AsuC2I	CCSGG	1 cut(s)	676
AsuHPI	GGTGA	4 cut(s)	706, 735, 766, 834
BaeGI	GKGCMC	1 cut(s)	172
BaeI	ACNNNNGTAYC	2 cut(s)	1095, 1128
BarI	GAAGNNNNNNTAC	2 cut(s)	991, 1023
BbrPI	CACGTG	1 cut(s)	173
BbsI	GAAGAC	1 cut(s)	1197
Bbv12I	GWGCWC	2 cut(s)	172, 1129
BbvI	GCAGC	2 cut(s)	234, 256
BccI	CCATC	2 cut(s)	295, 375
BciT130I	CCWGG	1 cut(s)	1182
BcnI	CCSGG	1 cut(s)	676
BcoDI	GTCTC	4 cut(s)	43, 128, 277, 694
BfaI	CTAG	3 cut(s)	398, 1019, 1223
BfmI	CTRYAG	1 cut(s)	790
BfrI	CTTAAG	1 cut(s)	796
BisI	GCNGC	4 cut(s)	245, 248, 362, 619
BlsI	GCNGC	4 cut(s)	246, 249, 363, 620
BmcAI	AGTACT	1 cut(s)	448
Bme1390I	CCNGG	2 cut(s)	676, 1182
BmgT120I	GGNCC	1 cut(s)	363
BmiI	GGNNCC	1 cut(s)	365
BmrFI	CCNGG	2 cut(s)	676, 1182
BmsI	GCATC	3 cut(s)	7, 349, 1367
BpiI	GAAGAC	1 cut(s)	1197
Bpu10I	CCTNAGC	1 cut(s)	855
BpuEI	CTTGAG	3 cut(s)	27, 42, 425
BpuMI	CCSGG	1 cut(s)	676
BsaAI	YACGTR	1 cut(s)	173
BsaHI	GRCGYC	1 cut(s)	36
BsaI	GGTCTC	1 cut(s)	277
Bsc4I	CCNNNNNNNGG	2 cut(s)	487, 699
Bse118I	RCCGGY	1 cut(s)	699
Bse1I	ACTGG	1 cut(s)	517
Bse3DI	GCAATG	1 cut(s)	356
BseBI	CCWGG	1 cut(s)	1182
BseGI	GGATG	1 cut(s)	1249
BseLI	CCNNNNNNNGG	2 cut(s)	487, 699
BseMI	GCAATG	1 cut(s)	356
BseMII	CTCAG	5 cut(s)	86, 609, 869, 971, 1142
BseNI	ACTGG	1 cut(s)	517
BseRI	GAGGAG	2 cut(s)	599, 1292
BseSI	GKGCMC	1 cut(s)	172
BseXI	GCAGC	2 cut(s)	234, 256
BsgI	GTGCAG	1 cut(s)	233
Bsh1236I	CGCG	1 cut(s)	82
BshFI	GGCC	3 cut(s)	364, 516, 699
BsiHKAI	GWGCWC	2 cut(s)	172, 1129
BsiSI	CCGG	2 cut(s)	675, 700
BslI	CCNNNNNNNGG	2 cut(s)	487, 699
BsmAI	GTCTC	4 cut(s)	43, 128, 277, 694
BsmBI	CGTCTC	2 cut(s)	43, 128
BsnI	GGCC	3 cut(s)	364, 516, 699
Bso31I	GGTCTC	1 cut(s)	277
Bsp1286I	GDGCHC	2 cut(s)	172, 1129
Bsp143I	GATC	1 cut(s)	1348
BspACI	CCGC	4 cut(s)	361, 618, 914, 938
BspANI	GGCC	3 cut(s)	364, 516, 699
BspCNI	CTCAG	5 cut(s)	85, 608, 868, 972, 1141
BspFNI	CGCG	1 cut(s)	82
BspLI	GGNNCC	1 cut(s)	365
BspQI	GCTCTTC	3 cut(s)	108, 219, 628
BspTI	CTTAAG	1 cut(s)	796
BspTNI	GGTCTC	1 cut(s)	277
BsrBI	CCGCTC	1 cut(s)	914
BsrDI	GCAATG	1 cut(s)	356
BsrFI	RCCGGY	1 cut(s)	699
BsrI	ACTGG	1 cut(s)	517
BssAI	RCCGGY	1 cut(s)	699
BssMI	GATC	1 cut(s)	1348
BssNI	GRCGYC	1 cut(s)	36
Bst2UI	CCWGG	1 cut(s)	1182
Bst4CI	ACNGT	3 cut(s)	451, 846, 1093
Bst6I	CTCTTC	8 cut(s)	108, 126, 219, 298, 540, 628, 1162, 1233
BstACI	GRCGYC	1 cut(s)	36
BstAFI	CTTAAG	1 cut(s)	796
BstBAI	YACGTR	1 cut(s)	173
BstC8I	GCNNGC	1 cut(s)	957
BstDEI	CTNAG	5 cut(s)	72, 595, 855, 980, 1128
BstF5I	GGATG	1 cut(s)	1249
BstFNI	CGCG	1 cut(s)	82
BstHHI	GCGC	1 cut(s)	82
BstKTI	GATC	1 cut(s)	1351
BstMAI	GTCTC	4 cut(s)	43, 128, 277, 694
BstMBI	GATC	1 cut(s)	1348
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstNI	CCWGG	1 cut(s)	1182
BstSCI	CCNGG	2 cut(s)	674, 1180
BstSFI	CTRYAG	1 cut(s)	790
BstSLI	GKGCMC	1 cut(s)	172
BstUI	CGCG	1 cut(s)	82
BstV1I	GCAGC	2 cut(s)	234, 256
BstV2I	GAAGAC	1 cut(s)	1197
BsuRI	GGCC	3 cut(s)	364, 516, 699
BtsCI	GGATG	1 cut(s)	1249
BtsI	GCAGTG	1 cut(s)	777
BtsIMutI	CAGTG	3 cut(s)	510, 777, 1089
Cac8I	GCNNGC	1 cut(s)	957
CaiI	CAGNNNCTG	1 cut(s)	109
CfoI	GCGC	1 cut(s)	82
Cfr10I	RCCGGY	1 cut(s)	699
Cfr13I	GGNCC	1 cut(s)	363
CseI	GACGC	1 cut(s)	145
Csp6I	GTAC	2 cut(s)	447, 1112
CspCI	CAANNNNNGTGG	4 cut(s)	288, 323, 1051, 1086
CviAII	CATG	4 cut(s)	26, 191, 459, 1363
CviQI	GTAC	2 cut(s)	447, 1112
DdeI	CTNAG	5 cut(s)	72, 595, 855, 980, 1128
DpnI	GATC	1 cut(s)	1350
DpnII	GATC	1 cut(s)	1348
DrdI	GACNNNNNNGTC	1 cut(s)	1199
DseDI	GACNNNNNNGTC	1 cut(s)	1199
Eam1104I	CTCTTC	8 cut(s)	108, 126, 219, 298, 540, 628, 1162, 1233
EarI	CTCTTC	8 cut(s)	108, 126, 219, 298, 540, 628, 1162, 1233
Eco31I	GGTCTC	1 cut(s)	277
Eco57I	CTGAAG	1 cut(s)	1209
Eco72I	CACGTG	1 cut(s)	173
EcoRII	CCWGG	1 cut(s)	1180
Esp3I	CGTCTC	2 cut(s)	43, 128
FaeI	CATG	4 cut(s)	29, 194, 462, 1366
FalI	AAGNNNNNCTT	4 cut(s)	213, 245, 1338, 1370
FatI	CATG	4 cut(s)	25, 190, 458, 1362
Fnu4HI	GCNGC	4 cut(s)	245, 248, 362, 619
FokI	GGATG	1 cut(s)	1256
Fsp4HI	GCNGC	4 cut(s)	245, 248, 362, 619
FspBI	CTAG	3 cut(s)	398, 1019, 1223
GlaI	GCGC	1 cut(s)	81
GluI	GCNGC	4 cut(s)	245, 248, 362, 619
HaeIII	GGCC	3 cut(s)	364, 516, 699
HapII	CCGG	2 cut(s)	675, 700
HgaI	GACGC	1 cut(s)	145
HhaI	GCGC	1 cut(s)	82
Hin1I	GRCGYC	1 cut(s)	36
Hin1II	CATG	4 cut(s)	29, 194, 462, 1366
Hin6I	GCGC	1 cut(s)	80
HinP1I	GCGC	1 cut(s)	80
HinfI	GANTC	5 cut(s)	55, 106, 474, 1146, 1258
HpaII	CCGG	2 cut(s)	675, 700
HphI	GGTGA	4 cut(s)	706, 735, 766, 834
Hpy166II	GTNNAC	2 cut(s)	170, 422
Hpy188I	TCNGA	7 cut(s)	75, 351, 598, 662, 926, 981, 1145
Hpy188III	TCNNGA	7 cut(s)	110, 155, 331, 398, 542, 1255, 1262
Hpy8I	GTNNAC	2 cut(s)	170, 422
Hpy99I	CGWCG	1 cut(s)	420
HpyAV	CCTTC	2 cut(s)	649, 945
HpyCH4III	ACNGT	3 cut(s)	451, 846, 1093
HpyCH4IV	ACGT	3 cut(s)	36, 172, 418
HpyCH4V	TGCA	6 cut(s)	170, 244, 250, 299, 340, 1366
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpyF3I	CTNAG	5 cut(s)	72, 595, 855, 980, 1128
HpySE526I	ACGT	3 cut(s)	36, 172, 418
Hsp92I	GRCGYC	1 cut(s)	36
Hsp92II	CATG	4 cut(s)	29, 194, 462, 1366
HspAI	GCGC	1 cut(s)	80
Kzo9I	GATC	1 cut(s)	1348
LguI	GCTCTTC	3 cut(s)	108, 219, 628
LmnI	GCTCC	5 cut(s)	206, 575, 911, 1020, 1306
Lsp1109I	GCAGC	2 cut(s)	234, 256
LweI	GCATC	3 cut(s)	7, 349, 1367
MaeI	CTAG	3 cut(s)	398, 1019, 1223
MaeII	ACGT	3 cut(s)	36, 172, 418
MaeIII	GTNAC	4 cut(s)	712, 1080, 1218, 1315
MalI	GATC	1 cut(s)	1350
MbiI	CCGCTC	1 cut(s)	914
MboI	GATC	1 cut(s)	1348
MfeI	CAATTG	2 cut(s)	210, 1107
MhlI	GDGCHC	2 cut(s)	172, 1129
MlyI	GAGTC	2 cut(s)	49, 1140
MmeI	TCCRAC	1 cut(s)	654
MseI	TTAA	5 cut(s)	797, 864, 1133, 1272, 1344
MspA1I	CMGCKG	1 cut(s)	247
MspCI	CTTAAG	1 cut(s)	796
MspI	CCGG	2 cut(s)	675, 700
MspR9I	CCNGG	2 cut(s)	676, 1182
MunI	CAATTG	2 cut(s)	210, 1107
MvaI	CCWGG	1 cut(s)	1182
MvnI	CGCG	1 cut(s)	82
MwoI	GCNNNNNNNGC	1 cut(s)	26
NciI	CCSGG	1 cut(s)	676
NdeII	GATC	1 cut(s)	1348
NlaIII	CATG	4 cut(s)	29, 194, 462, 1366
NlaIV	GGNNCC	1 cut(s)	365
NmuCI	GTSAC	1 cut(s)	712
PciSI	GCTCTTC	3 cut(s)	108, 219, 628
PfeI	GAWTC	3 cut(s)	106, 474, 1258
PkrI	GCNGC	4 cut(s)	246, 249, 363, 620
PleI	GAGTC	2 cut(s)	49, 1140
PmaCI	CACGTG	1 cut(s)	173
PmlI	CACGTG	1 cut(s)	173
PpsI	GAGTC	2 cut(s)	49, 1140
Ppu21I	YACGTR	1 cut(s)	173
Psp6I	CCWGG	1 cut(s)	1180
PspCI	CACGTG	1 cut(s)	173
PspGI	CCWGG	1 cut(s)	1180
PspN4I	GGNNCC	1 cut(s)	365
PspPI	GGNCC	1 cut(s)	363
PstNI	CAGNNNCTG	1 cut(s)	109
PvuII	CAGCTG	1 cut(s)	247
RsaI	GTAC	2 cut(s)	448, 1113
RsaNI	GTAC	2 cut(s)	447, 1112
SapI	GCTCTTC	3 cut(s)	108, 219, 628
SaqAI	TTAA	5 cut(s)	797, 864, 1133, 1272, 1344
SatI	GCNGC	4 cut(s)	245, 248, 362, 619
Sau3AI	GATC	1 cut(s)	1348
Sau96I	GGNCC	1 cut(s)	363
ScaI	AGTACT	1 cut(s)	448
SchI	GAGTC	2 cut(s)	49, 1140
ScrFI	CCNGG	2 cut(s)	676, 1182
SduI	GDGCHC	2 cut(s)	172, 1129
SfaNI	GCATC	3 cut(s)	7, 349, 1367
SfcI	CTRYAG	1 cut(s)	790
SmlI	CTYRAG	4 cut(s)	42, 57, 404, 796
SmoI	CTYRAG	4 cut(s)	42, 57, 404, 796
SsiI	CCGC	4 cut(s)	361, 618, 914, 938
SspMI	CTAG	3 cut(s)	398, 1019, 1223
StyD4I	CCNGG	2 cut(s)	674, 1180
TaaI	ACNGT	3 cut(s)	451, 846, 1093
TaiI	ACGT	3 cut(s)	39, 175, 421
TaqI	TCGA	2 cut(s)	154, 881
TatI	WGTACW	1 cut(s)	446
TauI	GCSGC	2 cut(s)	364, 621
TfiI	GAWTC	3 cut(s)	106, 474, 1258
Tru1I	TTAA	5 cut(s)	797, 864, 1133, 1272, 1344
Tru9I	TTAA	5 cut(s)	797, 864, 1133, 1272, 1344
TscAI	CASTG	3 cut(s)	517, 784, 1096
TseFI	GTSAC	1 cut(s)	712
TseI	GCWGC	2 cut(s)	244, 247
Tsp45I	GTSAC	1 cut(s)	712
TspRI	CASTG	3 cut(s)	517, 784, 1096
Vha464I	CTTAAG	1 cut(s)	796
VneI	GTGCAC	1 cut(s)	168
XapI	RAATTY	1 cut(s)	124
XbaI	TCTAGA	1 cut(s)	397
XspI	CTAG	3 cut(s)	398, 1019, 1223
ZraI	GACGTC	1 cut(s)	37
ZrmI	AGTACT	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.