Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007188

Physical Location & Seq

Genomic Coordinates Reverse (-)

31285555 .. 31294175

Gene Structure 8621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19159

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGCAAAAAATTGTAGCTGTCATTCTTCTGCTGCTGTTCCTCAGTCTGTTGTCCCTTCCTGTTTCAATCTTTTGCTTTTATTCAGATTTGAGGAACAGTTTATTGTTGCGTTGTTTAGCTCCTTCAAATTCAAACGACTGCCTCCTCAACTGCGGCTCTTCCTCCAACGTCACCTTCTTCAACCACTTCTTCATCGGAGATTTCAATTCCGGGTCGGGTTTTGTCTCCACAGGCCGGTCTATTTCAGTCACCAACAACAAAATCCCACCTCCAAACTCACCCTCTCCTTACCACACAGCAAGAGTTCTCACCACTGCTTCAAGCTATAGCTTAAGCGCTAGGAAAATTGGAACTCACTTGTCATTCGTCAAGGAGCGGTTCAAATCGGATTGGGCTTTGCGGAAAACAAAAGAAGGCTTGCTATTGTTCAGTTTATTCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

147

Amino Acids

16.28

Weight (kDa)

9.75

Isoelectric Point (pI)

35.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007188)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24010
fragaria_vesca	FvH4_7g30170
malus_domestica	MD01G1207700.v1.1 MD07G1278300.v1.1
prunus_persica	Prupe.2G300200_v2.0.a1
pyrus_communis	pycom01g21850 pycom07g25330
rosa_chinensis	RchiOBHm_Chr1g0359691 RchiOBHm_Chr1g0378221 RchiOBHm_Chr4g0438201 RchiOBHm_Chr6g0283241 RchiOBHm_Chr7g0214091
rosa_laevigata	RLG00000026460
rosa_multiflora	Rmu_sc0005657.1_g000022 Rmu_sc0038642.1_g000004
rosa_roxburghii	Rroxscaffold_2G00137220 Rroxscaffold_4G00280640
rosa_rugosa	Rorug01G0407100 Rorug07G0113600
rosa_samantha	Rh1AG422600 Rh1BG386500 Rh1CG056300 Rh1CG400100 Rh1DG417700
rosa_wichuraiana	Rw1G037480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	376
AciI	CCGC	3 cut(s)	153, 376, 400
AcsI	RAATTY	1 cut(s)	127
AfeI	AGCGCT	1 cut(s)	337
AfiI	CCNNNNNNNGG	1 cut(s)	234
AflII	CTTAAG	1 cut(s)	331
AgsI	TTSAA	7 cut(s)	66, 126, 132, 181, 205, 321, 382
AjuI	GAANNNNNNNTTGG	2 cut(s)	158, 190
AluBI	AGCT	4 cut(s)	17, 119, 324, 330
AluI	AGCT	4 cut(s)	17, 119, 324, 330
Alw26I	GTCTC	1 cut(s)	229
Aor51HI	AGCGCT	1 cut(s)	337
AoxI	GGCC	1 cut(s)	232
ApeKI	GCWGC	1 cut(s)	31
ApoI	RAATTY	1 cut(s)	127
AspLEI	GCGC	1 cut(s)	338
AsuC2I	CCSGG	1 cut(s)	211
AsuHPI	GGTGA	4 cut(s)	163, 241, 270, 301
BbvI	GCAGC	1 cut(s)	18
BcnI	CCSGG	1 cut(s)	211
BcoDI	GTCTC	1 cut(s)	229
BfaI	CTAG	1 cut(s)	339
BfmI	CTRYAG	1 cut(s)	325
BfoI	RGCGCY	1 cut(s)	339
BfrI	CTTAAG	1 cut(s)	331
BisI	GCNGC	2 cut(s)	32, 154
BlsI	GCNGC	2 cut(s)	33, 155
Bme1390I	CCNGG	1 cut(s)	211
BmrFI	CCNGG	1 cut(s)	211
BpuMI	CCSGG	1 cut(s)	211
Bsc4I	CCNNNNNNNGG	1 cut(s)	234
Bse118I	RCCGGY	1 cut(s)	234
BseLI	CCNNNNNNNGG	1 cut(s)	234
BseMII	CTCAG	1 cut(s)	55
BseRI	GAGGAG	1 cut(s)	134
BseXI	GCAGC	1 cut(s)	18
BshFI	GGCC	1 cut(s)	234
BsiSI	CCGG	2 cut(s)	210, 235
BslFI	GGGAC	1 cut(s)	37
BslI	CCNNNNNNNGG	1 cut(s)	234
BsmAI	GTCTC	1 cut(s)	229
BsmFI	GGGAC	1 cut(s)	37
BsnI	GGCC	1 cut(s)	234
BspACI	CCGC	3 cut(s)	153, 376, 400
BspANI	GGCC	1 cut(s)	234
BspCNI	CTCAG	1 cut(s)	54
BspQI	GCTCTTC	1 cut(s)	163
BspTI	CTTAAG	1 cut(s)	331
BsrBI	CCGCTC	1 cut(s)	376
BsrFI	RCCGGY	1 cut(s)	234
BssAI	RCCGGY	1 cut(s)	234
Bst4CI	ACNGT	1 cut(s)	98
Bst6I	CTCTTC	1 cut(s)	163
BstAFI	CTTAAG	1 cut(s)	331
BstC8I	GCNNGC	1 cut(s)	419
BstDEI	CTNAG	1 cut(s)	41
BstH2I	RGCGCY	1 cut(s)	339
BstHHI	GCGC	1 cut(s)	338
BstMAI	GTCTC	1 cut(s)	229
BstSCI	CCNGG	1 cut(s)	209
BstSFI	CTRYAG	1 cut(s)	325
BstV1I	GCAGC	1 cut(s)	18
BsuRI	GGCC	1 cut(s)	234
BtsI	GCAGTG	1 cut(s)	312
BtsIMutI	CAGTG	1 cut(s)	312
Cac8I	GCNNGC	1 cut(s)	419
CfoI	GCGC	1 cut(s)	338
Cfr10I	RCCGGY	1 cut(s)	234
CviJI	RGCY	8 cut(s)	17, 119, 156, 234, 324, 330, 395, 417
CviKI_1	RGCY	8 cut(s)	17, 119, 156, 234, 324, 330, 395, 417
DdeI	CTNAG	1 cut(s)	41
Eam1104I	CTCTTC	1 cut(s)	163
EarI	CTCTTC	1 cut(s)	163
Eco47III	AGCGCT	1 cut(s)	337
FaiI	YATR	1 cut(s)	327
FaqI	GGGAC	1 cut(s)	37
Fnu4HI	GCNGC	2 cut(s)	32, 154
Fsp4HI	GCNGC	2 cut(s)	32, 154
FspBI	CTAG	1 cut(s)	339
GlaI	GCGC	1 cut(s)	337
GluI	GCNGC	2 cut(s)	32, 154
HaeII	RGCGCY	1 cut(s)	339
HaeIII	GGCC	1 cut(s)	234
HapII	CCGG	2 cut(s)	210, 235
HhaI	GCGC	1 cut(s)	338
Hin6I	GCGC	1 cut(s)	336
HinP1I	GCGC	1 cut(s)	336
HpaII	CCGG	2 cut(s)	210, 235
HphI	GGTGA	4 cut(s)	163, 241, 270, 301
Hpy188I	TCNGA	4 cut(s)	85, 197, 388, 443
HpyAV	CCTTC	4 cut(s)	65, 132, 184, 407
HpyCH4III	ACNGT	1 cut(s)	98
HpyCH4IV	ACGT	1 cut(s)	168
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	1 cut(s)	41
HpySE526I	ACGT	1 cut(s)	168
HspAI	GCGC	1 cut(s)	336
LguI	GCTCTTC	1 cut(s)	163
LmnI	GCTCC	2 cut(s)	124, 373
LpnPI	CCDG	4 cut(s)	72, 216, 223, 248
Lsp1109I	GCAGC	1 cut(s)	18
MaeI	CTAG	1 cut(s)	339
MaeII	ACGT	1 cut(s)	168
MaeIII	GTNAC	2 cut(s)	169, 247
MbiI	CCGCTC	1 cut(s)	376
MboII	GAAGA	5 cut(s)	17, 150, 169, 181, 430
MluCI	AATT	4 cut(s)	9, 127, 205, 345
MmeI	TCCRAC	1 cut(s)	189
MnlI	CCTC	7 cut(s)	50, 84, 152, 155, 172, 279, 292
MseI	TTAA	1 cut(s)	332
MspCI	CTTAAG	1 cut(s)	331
MspI	CCGG	2 cut(s)	210, 235
MspR9I	CCNGG	1 cut(s)	211
NciI	CCSGG	1 cut(s)	211
NmuCI	GTSAC	2 cut(s)	169, 247
PciSI	GCTCTTC	1 cut(s)	163
PkrI	GCNGC	2 cut(s)	33, 155
SapI	GCTCTTC	1 cut(s)	163
SaqAI	TTAA	1 cut(s)	332
SatI	GCNGC	2 cut(s)	32, 154
ScrFI	CCNGG	1 cut(s)	211
SetI	ASST	7 cut(s)	19, 121, 171, 176, 271, 326, 332
SfcI	CTRYAG	1 cut(s)	325
SmlI	CTYRAG	1 cut(s)	331
SmoI	CTYRAG	1 cut(s)	331
Sse9I	AATT	4 cut(s)	9, 127, 205, 345
SsiI	CCGC	3 cut(s)	153, 376, 400
SspMI	CTAG	1 cut(s)	339
StyD4I	CCNGG	1 cut(s)	209
TaaI	ACNGT	1 cut(s)	98
TaiI	ACGT	1 cut(s)	171
TasI	AATT	4 cut(s)	9, 127, 205, 345
TauI	GCSGC	1 cut(s)	156
Tru1I	TTAA	1 cut(s)	332
Tru9I	TTAA	1 cut(s)	332
TscAI	CASTG	1 cut(s)	319
TseFI	GTSAC	2 cut(s)	169, 247
TseI	GCWGC	1 cut(s)	31
Tsp45I	GTSAC	2 cut(s)	169, 247
TspDTI	ATGAA	1 cut(s)	181
TspRI	CASTG	1 cut(s)	319
Vha464I	CTTAAG	1 cut(s)	331
XapI	RAATTY	1 cut(s)	127
XspI	CTAG	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.