Rroxscaffold_2G00137220

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0007188
Physical Location & Seq
Forward (+)
74936568 .. 74940263
3696 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00137220.1

Sequence Viewer

Length: 444 bp
ATGACAAAGAGTGAGGGACTGTTGGTATTATTGGTTAGATCGCCGCTATCTGATAGTGAGAGGAGAGAAAACAGAGAGAGAGACGGAGAGAGTGAGAGTTCAGTTGATAAGAGCTATACTCAAAACACTGAATCAGTTTTTGTCATCAGAAAACTCGGTAATTTTTTCACTTTTTTGATACGTATACAAACTAACCATCATGTGTTGCTTGCTTACTCGAGCTTTCCAGGTTGGTGTTATCGACATGGTGTCTATGCTCAACCTTTGGGTATTAGAATTACAATTATCACCAGTTTTATCCAGCAGTCAAGTTTAGTTGAATTTTCTACTGTATCCATGTTCAAGCCTTTGAGGATTGTAGTTACAGTTGCCATTGGTTTTGCATTGAAACCTACTATTACTCTTTTGACTCAGAAATCCAGAAATAAAGCACGGGCTATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

16.7

Weight (kDa)

10.07

Isoelectric Point (pI)

36.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 184
AciI CCGC 1 cut(s) 44
AcsI RAATTY 1 cut(s) 320
AgsI TTSAA 3 cut(s) 320, 343, 388
AhdI GACNNNNNGTC 1 cut(s) 248
AjnI CCWGG 1 cut(s) 226
AluBI AGCT 2 cut(s) 114, 222
AluI AGCT 2 cut(s) 114, 222
Alw26I GTCTC 1 cut(s) 75
Ama87I CYCGRG 1 cut(s) 217
ApoI RAATTY 1 cut(s) 320
AsuHPI GGTGA 1 cut(s) 280
AvaI CYCGRG 1 cut(s) 217
BccI CCATC 1 cut(s) 204
BciT130I CCWGG 1 cut(s) 228
BciVI GTATCC 1 cut(s) 343
BcoDI GTCTC 1 cut(s) 75
BfaI CTAG 1 cut(s) 442
BfuI GTATCC 1 cut(s) 343
BisI GCNGC 1 cut(s) 44
BlsI GCNGC 1 cut(s) 45
Bme1390I CCNGG 1 cut(s) 228
BmeRI GACNNNNNGTC 1 cut(s) 248
BmeT110I CYCGRG 1 cut(s) 217
BmrFI CCNGG 1 cut(s) 228
BplI GAGNNNNNCTC 2 cut(s) 103, 135
BsaAI YACGTR 1 cut(s) 182
Bse1I ACTGG 1 cut(s) 291
BseBI CCWGG 1 cut(s) 228
BseMII CTCAG 1 cut(s) 425
BseNI ACTGG 1 cut(s) 291
BseRI GAGGAG 1 cut(s) 76
BsiHKCI CYCGRG 1 cut(s) 217
BslFI GGGAC 1 cut(s) 30
BsmAI GTCTC 1 cut(s) 75
BsmBI CGTCTC 1 cut(s) 75
BsmFI GGGAC 1 cut(s) 30
BsoBI CYCGRG 1 cut(s) 217
Bsp143I GATC 1 cut(s) 38
BspACI CCGC 1 cut(s) 44
BspCNI CTCAG 1 cut(s) 424
BsrI ACTGG 1 cut(s) 291
BssMI GATC 1 cut(s) 38
BssNAI GTATAC 1 cut(s) 185
Bst1107I GTATAC 1 cut(s) 185
Bst2UI CCWGG 1 cut(s) 228
Bst4CI ACNGT 3 cut(s) 21, 331, 367
BstBAI YACGTR 1 cut(s) 182
BstC8I GCNNGC 1 cut(s) 210
BstDEI CTNAG 1 cut(s) 411
BstKTI GATC 1 cut(s) 41
BstMAI GTCTC 1 cut(s) 75
BstMBI GATC 1 cut(s) 38
BstNI CCWGG 1 cut(s) 228
BstSCI CCNGG 1 cut(s) 226
BstSNI TACGTA 1 cut(s) 182
BstZ17I GTATAC 1 cut(s) 185
BsuI GTATCC 1 cut(s) 343
BtsIMutI CAGTG 1 cut(s) 126
Cac8I GCNNGC 1 cut(s) 210
CviAII CATG 3 cut(s) 200, 245, 337
CviJI RGCY 4 cut(s) 114, 222, 346, 437
CviKI_1 RGCY 4 cut(s) 114, 222, 346, 437
DdeI CTNAG 1 cut(s) 411
DpnI GATC 1 cut(s) 40
DpnII GATC 1 cut(s) 38
DriI GACNNNNNGTC 1 cut(s) 248
Eam1105I GACNNNNNGTC 1 cut(s) 248
Eco105I TACGTA 1 cut(s) 182
Eco88I CYCGRG 1 cut(s) 217
EcoRII CCWGG 1 cut(s) 226
Esp3I CGTCTC 1 cut(s) 75
FaeI CATG 3 cut(s) 203, 248, 340
FaiI YATR 6 cut(s) 117, 185, 201, 246, 255, 338
FaqI GGGAC 1 cut(s) 30
FatI CATG 3 cut(s) 199, 244, 336
FblI GTMKAC 1 cut(s) 184
Fnu4HI GCNGC 1 cut(s) 44
Fsp4HI GCNGC 1 cut(s) 44
FspBI CTAG 1 cut(s) 442
GluI GCNGC 1 cut(s) 44
Hin1II CATG 3 cut(s) 203, 248, 340
HinfI GANTC 2 cut(s) 131, 409
HphI GGTGA 1 cut(s) 280
Hpy166II GTNNAC 1 cut(s) 185
Hpy188I TCNGA 3 cut(s) 52, 149, 414
Hpy188III TCNNGA 1 cut(s) 420
Hpy8I GTNNAC 1 cut(s) 185
HpyCH4III ACNGT 3 cut(s) 21, 331, 367
HpyCH4IV ACGT 1 cut(s) 181
HpyCH4V TGCA 1 cut(s) 383
HpyF3I CTNAG 1 cut(s) 411
HpySE526I ACGT 1 cut(s) 181
Hsp92II CATG 3 cut(s) 203, 248, 340
Kzo9I GATC 1 cut(s) 38
LpnPI CCDG 5 cut(s) 213, 240, 304, 314, 433
MaeI CTAG 1 cut(s) 442
MaeII ACGT 1 cut(s) 181
MaeIII GTNAC 1 cut(s) 361
MalI GATC 1 cut(s) 40
MboI GATC 1 cut(s) 38
MluCI AATT 4 cut(s) 160, 276, 282, 320
MlyI GAGTC 1 cut(s) 403
MnlI CCTC 3 cut(s) 7, 54, 345
MspR9I CCNGG 1 cut(s) 228
MvaI CCWGG 1 cut(s) 228
NdeII GATC 1 cut(s) 38
NlaIII CATG 3 cut(s) 203, 248, 340
PaeR7I CTCGAG 1 cut(s) 217
PfeI GAWTC 1 cut(s) 131
PkrI GCNGC 1 cut(s) 45
PleI GAGTC 1 cut(s) 403
PpsI GAGTC 1 cut(s) 403
Ppu21I YACGTR 1 cut(s) 182
Psp6I CCWGG 1 cut(s) 226
PspGI CCWGG 1 cut(s) 226
PspXI VCTCGAGB 1 cut(s) 217
SatI GCNGC 1 cut(s) 44
Sau3AI GATC 1 cut(s) 38
SchI GAGTC 1 cut(s) 403
ScrFI CCNGG 1 cut(s) 228
SetI ASST 6 cut(s) 116, 184, 224, 232, 265, 394
Sfr274I CTCGAG 1 cut(s) 217
SlaI CTCGAG 1 cut(s) 217
SmlI CTYRAG 1 cut(s) 217
SmoI CTYRAG 1 cut(s) 217
SnaBI TACGTA 1 cut(s) 182
Sse9I AATT 4 cut(s) 160, 276, 282, 320
SsiI CCGC 1 cut(s) 44
SspMI CTAG 1 cut(s) 442
StyD4I CCNGG 1 cut(s) 226
TaaI ACNGT 3 cut(s) 21, 331, 367
TaiI ACGT 1 cut(s) 184
TaqI TCGA 2 cut(s) 218, 241
TasI AATT 4 cut(s) 160, 276, 282, 320
TauI GCSGC 1 cut(s) 46
TfiI GAWTC 1 cut(s) 131
TscAI CASTG 1 cut(s) 133
TspGWI ACGGA 1 cut(s) 99
TspRI CASTG 1 cut(s) 133
XapI RAATTY 1 cut(s) 320
XhoI CTCGAG 1 cut(s) 217
XmiI GTMKAC 1 cut(s) 184
XspI CTAG 1 cut(s) 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.