RchiOBHm_Chr6g0298541

Amino acid permease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0018825
Physical Location & Seq
Reverse (-)
59915903 .. 59918830
2928 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26801

Sequence Viewer

Length: 768 bp
ATGAGTACTATTAGAGTTATCAAAATTTTAGTGCGGATTGGATCTTTACTTGACTGGGAGTTTACGATCATTTCATTCATTCAGGGCTATCCAGAATTCGATTTGCCATCAAGAGAAGTAAGTGCGGGGTTGGATTCGGGGTTGTGCAAATTGTTTAATCTCAAATCCCAAACTTTCAGAAGCTGTCCTGGCTCTCAAAGCTTGCTCCAATTATGGCCGGAAGGAAAAACATATGTTACTGGATTGCATCAATCTTCATCAGAAAAAGTTTGGAGTATATTCATTGCAGCCGGAGACATCGCACTTCCTTACTCATTCAGTCATTTGCAGAAACTGAAGTCATCACCACCAGAAAACAAAGTGATGAAGAAGGCCACCAAAACAGGGGTGATGGTGATGACAATATTATTTACTTTGTGTGGTACCTTGGGTTATGCTGCATTTGGAGATGAAAAAGTACCAGAAAATCTCATGGCTGGTTTTCTATCTCATAAGGCCTTCTGGATAGTGGACTTGGCCAATGTCTTCATTGTGGTGCACCTAGTGGGTGCAGTTCAGGTAATTTTCAGAGTTAGGTTCATAAGTTTGCATGCTAGAATAACGGTGAGAGTTATTGTCCGCATCACACAGCACTGCCTTTCTTCTATTGGCTACTGGCCGCTCACCATCTACTTCCCGTTGCAGTTGCACATTGCGCAAAAGGAGATGCAGCGAGCCACCGTCCATTGGTTTGGCCTCCAGCTGCTGAGTGAGATATGTGCTTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

255

Amino Acids

28.62

Weight (kDa)

9.34

Isoelectric Point (pI)

41.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 85 - 200 2.3e-18 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018825)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g44100
rosa_chinensis RchiOBHm_Chr6g0298541
rosa_laevigata RLG00000011505
rosa_multiflora Rmu_sc0004500.1_g000006
rosa_samantha Rh6BG400200 Rh6CG406100 Rh6DG392600 Rh6DG392700
rosa_wichuraiana Rw6G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 696
Acc65I GGTACC 1 cut(s) 422
AccB1I GGYRCC 1 cut(s) 422
AccBSI CCGCTC 1 cut(s) 661
AciI CCGC 4 cut(s) 34, 125, 619, 659
AclWI GGATC 1 cut(s) 49
AcoI YGGCCR 3 cut(s) 215, 516, 656
AcsI RAATTY 2 cut(s) 24, 95
AcuI CTGAAG 1 cut(s) 356
AdeI CACNNNGTG 1 cut(s) 544
AfaI GTAC 3 cut(s) 7, 424, 459
AfiI CCNNNNNNNGG 2 cut(s) 384, 726
AjnI CCWGG 1 cut(s) 187
AluBI AGCT 3 cut(s) 183, 201, 742
AluI AGCT 3 cut(s) 183, 201, 742
Alw21I GWGCWC 1 cut(s) 540
Alw26I GTCTC 1 cut(s) 288
Alw44I GTGCAC 1 cut(s) 536
AlwI GGATC 1 cut(s) 49
AlwNI CAGNNNCTG 3 cut(s) 183, 334, 745
AoxI GGCC 6 cut(s) 215, 372, 495, 516, 656, 733
ApaLI GTGCAC 1 cut(s) 536
ApeKI GCWGC 4 cut(s) 287, 437, 709, 742
ApoI RAATTY 2 cut(s) 24, 95
Asp718I GGTACC 1 cut(s) 422
AspLEI GCGC 1 cut(s) 697
AsuHPI GGTGA 5 cut(s) 336, 400, 406, 616, 655
BaeGI GKGCMC 1 cut(s) 540
BalI TGGCCA 1 cut(s) 518
BanI GGYRCC 1 cut(s) 422
BbsI GAAGAC 1 cut(s) 517
Bbv12I GWGCWC 1 cut(s) 540
BbvI GCAGC 4 cut(s) 299, 424, 721, 729
BccI CCATC 3 cut(s) 115, 385, 674
BciT130I CCWGG 1 cut(s) 189
BcoDI GTCTC 1 cut(s) 288
BfaI CTAG 2 cut(s) 542, 594
BisI GCNGC 5 cut(s) 288, 438, 659, 710, 743
BlsI GCNGC 5 cut(s) 289, 439, 660, 711, 744
BmcAI AGTACT 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 189
BmiI GGNNCC 1 cut(s) 424
BmrFI CCNGG 1 cut(s) 189
BmrI ACTGGG 1 cut(s) 64
BmsI GCATC 3 cut(s) 256, 630, 696
BmuI ACTGGG 1 cut(s) 64
BpiI GAAGAC 1 cut(s) 517
BpmI CTGGAG 1 cut(s) 722
BsaJI CCNNGG 1 cut(s) 426
Bsc4I CCNNNNNNNGG 2 cut(s) 384, 726
Bse1I ACTGG 3 cut(s) 59, 244, 659
Bse3DI GCAATG 2 cut(s) 282, 690
BseBI CCWGG 1 cut(s) 189
BseDI CCNNGG 1 cut(s) 426
BseLI CCNNNNNNNGG 2 cut(s) 384, 726
BseMI GCAATG 2 cut(s) 282, 690
BseMII CTCAG 1 cut(s) 737
BseNI ACTGG 3 cut(s) 59, 244, 659
BseSI GKGCMC 1 cut(s) 540
BseXI GCAGC 4 cut(s) 299, 424, 721, 729
BsgI GTGCAG 1 cut(s) 570
BshFI GGCC 6 cut(s) 217, 374, 497, 518, 658, 735
BshNI GGYRCC 1 cut(s) 422
BsiHKAI GWGCWC 1 cut(s) 540
BsiSI CCGG 2 cut(s) 218, 291
BslI CCNNNNNNNGG 2 cut(s) 384, 726
BsmAI GTCTC 1 cut(s) 288
BsnI GGCC 6 cut(s) 217, 374, 497, 518, 658, 735
Bsp1286I GDGCHC 1 cut(s) 540
Bsp143I GATC 2 cut(s) 41, 66
BspACI CCGC 4 cut(s) 34, 125, 619, 659
BspANI GGCC 6 cut(s) 217, 374, 497, 518, 658, 735
BspCNI CTCAG 1 cut(s) 738
BspLI GGNNCC 1 cut(s) 424
BspPI GGATC 1 cut(s) 49
BspT107I GGYRCC 1 cut(s) 422
BsrBI CCGCTC 1 cut(s) 661
BsrDI GCAATG 2 cut(s) 282, 690
BsrI ACTGG 3 cut(s) 59, 244, 659
BssECI CCNNGG 1 cut(s) 426
BssMI GATC 2 cut(s) 41, 66
BssT1I CCWWGG 1 cut(s) 426
Bst2UI CCWGG 1 cut(s) 189
Bst4CI ACNGT 2 cut(s) 604, 721
BstC8I GCNNGC 3 cut(s) 203, 591, 714
BstDEI CTNAG 1 cut(s) 746
BstHHI GCGC 1 cut(s) 697
BstKTI GATC 2 cut(s) 44, 69
BstMAI GTCTC 1 cut(s) 288
BstMBI GATC 2 cut(s) 41, 66
BstMWI GCNNNNNNNGC 3 cut(s) 189, 198, 694
BstNI CCWGG 1 cut(s) 189
BstNSI RCATGY 1 cut(s) 593
BstSCI CCNGG 1 cut(s) 187
BstSLI GKGCMC 1 cut(s) 540
BstV1I GCAGC 4 cut(s) 299, 424, 721, 729
BstV2I GAAGAC 1 cut(s) 517
BstX2I RGATCY 1 cut(s) 41
BstXI CCANNNNNNTGG 1 cut(s) 731
BstYI RGATCY 1 cut(s) 41
BsuRI GGCC 6 cut(s) 217, 374, 497, 518, 658, 735
BtgZI GCGATG 1 cut(s) 283
BtsI GCAGTG 1 cut(s) 631
BtsIMutI CAGTG 1 cut(s) 631
Cac8I GCNNGC 3 cut(s) 203, 591, 714
CaiI CAGNNNCTG 3 cut(s) 183, 334, 745
CfoI GCGC 1 cut(s) 697
Csp6I GTAC 3 cut(s) 6, 423, 458
CviAII CATG 2 cut(s) 472, 590
CviQI GTAC 3 cut(s) 6, 423, 458
DdeI CTNAG 1 cut(s) 746
DpnI GATC 2 cut(s) 43, 68
DpnII GATC 2 cut(s) 41, 66
DraIII CACNNNGTG 1 cut(s) 544
EaeI YGGCCR 3 cut(s) 215, 516, 656
Eco130I CCWWGG 1 cut(s) 426
Eco147I AGGCCT 1 cut(s) 497
Eco57I CTGAAG 1 cut(s) 356
EcoRI GAATTC 1 cut(s) 95
EcoRII CCWGG 1 cut(s) 187
EcoT14I CCWWGG 1 cut(s) 426
ErhI CCWWGG 1 cut(s) 426
FaeI CATG 2 cut(s) 475, 593
FatI CATG 2 cut(s) 471, 589
FauI CCCGC 1 cut(s) 118
FauNDI CATATG 1 cut(s) 232
Fnu4HI GCNGC 5 cut(s) 288, 438, 659, 710, 743
Fsp4HI GCNGC 5 cut(s) 288, 438, 659, 710, 743
FspBI CTAG 2 cut(s) 542, 594
FspI TGCGCA 1 cut(s) 696
GlaI GCGC 1 cut(s) 696
GluI GCNGC 5 cut(s) 288, 438, 659, 710, 743
GsuI CTGGAG 1 cut(s) 722
HaeIII GGCC 6 cut(s) 217, 374, 497, 518, 658, 735
HapII CCGG 2 cut(s) 218, 291
HhaI GCGC 1 cut(s) 697
Hin1II CATG 2 cut(s) 475, 593
Hin6I GCGC 1 cut(s) 695
HinP1I GCGC 1 cut(s) 695
HindIII AAGCTT 1 cut(s) 199
HinfI GANTC 1 cut(s) 134
HpaII CCGG 2 cut(s) 218, 291
HphI GGTGA 5 cut(s) 336, 400, 406, 616, 655
Hpy166II GTNNAC 3 cut(s) 63, 511, 538
Hpy188I TCNGA 3 cut(s) 179, 262, 569
Hpy188III TCNNGA 3 cut(s) 92, 111, 502
Hpy8I GTNNAC 3 cut(s) 63, 511, 538
HpyAV CCTTC 3 cut(s) 215, 364, 508
HpyCH4III ACNGT 2 cut(s) 604, 721
HpyF10VI GCNNNNNNNGC 3 cut(s) 189, 198, 694
HpyF3I CTNAG 1 cut(s) 746
Hsp92II CATG 2 cut(s) 475, 593
HspAI GCGC 1 cut(s) 695
KpnI GGTACC 1 cut(s) 426
Kzo9I GATC 2 cut(s) 41, 66
LmnI GCTCC 1 cut(s) 210
Lsp1109I GCAGC 4 cut(s) 299, 424, 721, 729
LweI GCATC 3 cut(s) 256, 630, 696
MaeI CTAG 2 cut(s) 542, 594
MaeIII GTNAC 1 cut(s) 235
MalI GATC 2 cut(s) 43, 68
MbiI CCGCTC 1 cut(s) 661
MboI GATC 2 cut(s) 41, 66
MboII GAAGA 4 cut(s) 246, 379, 517, 633
MflI RGATCY 1 cut(s) 41
MhlI GDGCHC 1 cut(s) 540
MlsI TGGCCA 1 cut(s) 518
MluCI AATT 5 cut(s) 24, 95, 149, 209, 561
MluNI TGGCCA 1 cut(s) 518
MmeI TCCRAC 1 cut(s) 111
MnlI CCTC 1 cut(s) 746
Mox20I TGGCCA 1 cut(s) 518
MscI TGGCCA 1 cut(s) 518
MseI TTAA 1 cut(s) 156
MslI CAYNNNNRTG 1 cut(s) 533
Msp20I TGGCCA 1 cut(s) 518
MspA1I CMGCKG 1 cut(s) 742
MspI CCGG 2 cut(s) 218, 291
MspR9I CCNGG 1 cut(s) 189
MvaI CCWGG 1 cut(s) 189
MwoI GCNNNNNNNGC 3 cut(s) 189, 198, 694
NdeI CATATG 1 cut(s) 232
NdeII GATC 2 cut(s) 41, 66
NlaIII CATG 2 cut(s) 475, 593
NlaIV GGNNCC 1 cut(s) 424
NsbI TGCGCA 1 cut(s) 696
NspI RCATGY 1 cut(s) 593
PaeI GCATGC 1 cut(s) 593
PceI AGGCCT 1 cut(s) 497
PfeI GAWTC 1 cut(s) 134
PkrI GCNGC 5 cut(s) 289, 439, 660, 711, 744
Psp6I CCWGG 1 cut(s) 187
PspGI CCWGG 1 cut(s) 187
PspN4I GGNNCC 1 cut(s) 424
PstNI CAGNNNCTG 3 cut(s) 183, 334, 745
PsuI RGATCY 1 cut(s) 41
PvuII CAGCTG 1 cut(s) 742
RsaI GTAC 3 cut(s) 7, 424, 459
RsaNI GTAC 3 cut(s) 6, 423, 458
RseI CAYNNNNRTG 1 cut(s) 533
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 5 cut(s) 288, 438, 659, 710, 743
Sau3AI GATC 2 cut(s) 41, 66
ScaI AGTACT 1 cut(s) 7
ScrFI CCNGG 1 cut(s) 189
SduI GDGCHC 1 cut(s) 540
SetI ASST 7 cut(s) 185, 203, 428, 543, 561, 578, 744
SfaNI GCATC 3 cut(s) 256, 630, 696
SmiMI CAYNNNNRTG 1 cut(s) 533
SphI GCATGC 1 cut(s) 593
Sse9I AATT 5 cut(s) 24, 95, 149, 209, 561
SseBI AGGCCT 1 cut(s) 497
SsiI CCGC 4 cut(s) 34, 125, 619, 659
SspI AATATT 1 cut(s) 405
SspMI CTAG 2 cut(s) 542, 594
StuI AGGCCT 1 cut(s) 497
StyD4I CCNGG 1 cut(s) 187
StyI CCWWGG 1 cut(s) 426
TaaI ACNGT 2 cut(s) 604, 721
TaqI TCGA 1 cut(s) 99
TasI AATT 5 cut(s) 24, 95, 149, 209, 561
TatI WGTACW 1 cut(s) 5
TauI GCSGC 1 cut(s) 661
TfiI GAWTC 1 cut(s) 134
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TscAI CASTG 1 cut(s) 638
TseI GCWGC 4 cut(s) 287, 437, 709, 742
TspDTI ATGAA 8 cut(s) 63, 67, 246, 271, 380, 465, 517, 568
TspRI CASTG 1 cut(s) 638
VneI GTGCAC 1 cut(s) 536
XapI RAATTY 2 cut(s) 24, 95
XceI RCATGY 1 cut(s) 593
XspI CTAG 2 cut(s) 542, 594
ZrmI AGTACT 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.