Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004500.1

Orthogroup ID

OG0018825

Physical Location & Seq

Genomic Coordinates Reverse (-)

31354 .. 31938

Gene Structure 585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004500.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

atgaagacggccaccaaaacaggggtgatggtgatgacaatattatttactttgtgtggtaccttgggttatgctgcatttggagatgaaaaagtaccagaaaatctcatggctggttttctatctcataaggccttctggatagtggacttggccaatgtcttcattgtggtgcacctagtgggtgcatttcaggagatggccgaggtctggttttgtaaccaaggaaagggcagtaagctttgggaaggtgacgttcaacatcaacatgcttcgcttatgctgcagaacgggctttgtgcttttggctactgtgattgccacagcactgcctttcttctattggctactggccgctcaccatctacttcccgttgcagctgcacattgcgcaaaagaagatgcagcgagcaaccgtccattggtttggcctccagctgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

147

Amino Acids

16.03

Weight (kDa)

8.1

Isoelectric Point (pI)

46.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018825)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g44100
rosa_chinensis	RchiOBHm_Chr6g0298541
rosa_laevigata	RLG00000011505
rosa_multiflora	Rmu_sc0004500.1_g000006
rosa_samantha	Rh6BG400200 Rh6CG406100 Rh6DG392600 Rh6DG392700
rosa_wichuraiana	Rw6G034300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	392
Acc65I	GGTACC	1 cut(s)	59
AccB1I	GGYRCC	1 cut(s)	59
AccBSI	CCGCTC	1 cut(s)	357
AciI	CCGC	1 cut(s)	355
AcoI	YGGCCR	4 cut(s)	9, 153, 201, 352
AdeI	CACNNNGTG	1 cut(s)	181
AfaI	GTAC	2 cut(s)	61, 96
AfiI	CCNNNNNNNGG	4 cut(s)	21, 210, 229, 422
AgsI	TTSAA	1 cut(s)	260
AluBI	AGCT	3 cut(s)	241, 381, 438
AluI	AGCT	3 cut(s)	241, 381, 438
Alw21I	GWGCWC	1 cut(s)	177
Alw44I	GTGCAC	1 cut(s)	173
AlwNI	CAGNNNCTG	1 cut(s)	441
AoxI	GGCC	6 cut(s)	9, 132, 153, 201, 352, 429
ApaLI	GTGCAC	1 cut(s)	173
ApeKI	GCWGC	6 cut(s)	74, 283, 378, 381, 405, 438
Asp718I	GGTACC	1 cut(s)	59
AspLEI	GCGC	1 cut(s)	393
AsuHPI	GGTGA	4 cut(s)	37, 43, 263, 351
BaeGI	GKGCMC	1 cut(s)	177
BalI	TGGCCA	1 cut(s)	155
BanI	GGYRCC	1 cut(s)	59
BbsI	GAAGAC	2 cut(s)	11, 154
Bbv12I	GWGCWC	1 cut(s)	177
BbvI	GCAGC	6 cut(s)	61, 270, 368, 390, 417, 425
BccI	CCATC	3 cut(s)	22, 193, 370
BceAI	ACGGC	1 cut(s)	24
BfaI	CTAG	1 cut(s)	179
BfmI	CTRYAG	1 cut(s)	284
BisI	GCNGC	7 cut(s)	75, 284, 355, 379, 382, 406, 439
BlsI	GCNGC	7 cut(s)	76, 285, 356, 380, 383, 407, 440
BmiI	GGNNCC	1 cut(s)	61
BmsI	GCATC	1 cut(s)	392
BpiI	GAAGAC	2 cut(s)	11, 154
BpmI	CTGGAG	1 cut(s)	418
BsaJI	CCNNGG	3 cut(s)	63, 204, 223
Bsc4I	CCNNNNNNNGG	4 cut(s)	21, 210, 229, 422
Bse1I	ACTGG	1 cut(s)	355
Bse3DI	GCAATG	1 cut(s)	386
BseDI	CCNNGG	3 cut(s)	63, 204, 223
BseLI	CCNNNNNNNGG	4 cut(s)	21, 210, 229, 422
BseMI	GCAATG	1 cut(s)	386
BseNI	ACTGG	1 cut(s)	355
BseSI	GKGCMC	1 cut(s)	177
BseXI	GCAGC	6 cut(s)	61, 270, 368, 390, 417, 425
BsgI	GTGCAG	1 cut(s)	367
BshFI	GGCC	6 cut(s)	11, 134, 155, 203, 354, 431
BshNI	GGYRCC	1 cut(s)	59
BsiHKAI	GWGCWC	1 cut(s)	177
BslI	CCNNNNNNNGG	4 cut(s)	21, 210, 229, 422
BsnI	GGCC	6 cut(s)	11, 134, 155, 203, 354, 431
Bsp1286I	GDGCHC	1 cut(s)	177
BspACI	CCGC	1 cut(s)	355
BspANI	GGCC	6 cut(s)	11, 134, 155, 203, 354, 431
BspLI	GGNNCC	1 cut(s)	61
BspMAI	CTGCAG	1 cut(s)	288
BspT107I	GGYRCC	1 cut(s)	59
BsrBI	CCGCTC	1 cut(s)	357
BsrDI	GCAATG	1 cut(s)	386
BsrI	ACTGG	1 cut(s)	355
BssECI	CCNNGG	3 cut(s)	63, 204, 223
BssT1I	CCWWGG	2 cut(s)	63, 223
Bst4CI	ACNGT	2 cut(s)	314, 417
BstC8I	GCNNGC	1 cut(s)	410
BstHHI	GCGC	1 cut(s)	393
BstMWI	GCNNNNNNNGC	3 cut(s)	283, 292, 390
BstNSI	RCATGY	1 cut(s)	272
BstSFI	CTRYAG	1 cut(s)	284
BstSLI	GKGCMC	1 cut(s)	177
BstV1I	GCAGC	6 cut(s)	61, 270, 368, 390, 417, 425
BstV2I	GAAGAC	2 cut(s)	11, 154
BstXI	CCANNNNNNTGG	1 cut(s)	427
BsuRI	GGCC	6 cut(s)	11, 134, 155, 203, 354, 431
BtsI	GCAGTG	1 cut(s)	327
BtsIMutI	CAGTG	1 cut(s)	327
Cac8I	GCNNGC	1 cut(s)	410
CaiI	CAGNNNCTG	1 cut(s)	441
CfoI	GCGC	1 cut(s)	393
Csp6I	GTAC	2 cut(s)	60, 95
CviAII	CATG	2 cut(s)	109, 269
CviQI	GTAC	2 cut(s)	60, 95
DraIII	CACNNNGTG	1 cut(s)	181
EaeI	YGGCCR	4 cut(s)	9, 153, 201, 352
Eco130I	CCWWGG	2 cut(s)	63, 223
Eco147I	AGGCCT	1 cut(s)	134
EcoT14I	CCWWGG	2 cut(s)	63, 223
ErhI	CCWWGG	2 cut(s)	63, 223
FaeI	CATG	2 cut(s)	112, 272
FaiI	YATR	5 cut(s)	72, 110, 129, 270, 281
FatI	CATG	2 cut(s)	108, 268
Fnu4HI	GCNGC	7 cut(s)	75, 284, 355, 379, 382, 406, 439
Fsp4HI	GCNGC	7 cut(s)	75, 284, 355, 379, 382, 406, 439
FspBI	CTAG	1 cut(s)	179
FspI	TGCGCA	1 cut(s)	392
GlaI	GCGC	1 cut(s)	392
GluI	GCNGC	7 cut(s)	75, 284, 355, 379, 382, 406, 439
GsuI	CTGGAG	1 cut(s)	418
HaeIII	GGCC	6 cut(s)	11, 134, 155, 203, 354, 431
HhaI	GCGC	1 cut(s)	393
Hin1II	CATG	2 cut(s)	112, 272
Hin6I	GCGC	1 cut(s)	391
HinP1I	GCGC	1 cut(s)	391
HindIII	AAGCTT	1 cut(s)	239
HphI	GGTGA	4 cut(s)	37, 43, 263, 351
Hpy166II	GTNNAC	2 cut(s)	148, 175
Hpy188III	TCNNGA	2 cut(s)	139, 194
Hpy8I	GTNNAC	2 cut(s)	148, 175
HpyAV	CCTTC	2 cut(s)	145, 242
HpyCH4III	ACNGT	2 cut(s)	314, 417
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	7 cut(s)	77, 175, 188, 286, 378, 384, 405
HpyF10VI	GCNNNNNNNGC	3 cut(s)	283, 292, 390
HpySE526I	ACGT	1 cut(s)	255
Hsp92II	CATG	2 cut(s)	112, 272
HspAI	GCGC	1 cut(s)	391
KpnI	GGTACC	1 cut(s)	63
LpnPI	CCDG	7 cut(s)	6, 99, 111, 124, 179, 196, 336
Lsp1109I	GCAGC	6 cut(s)	61, 270, 368, 390, 417, 425
LweI	GCATC	1 cut(s)	392
MaeI	CTAG	1 cut(s)	179
MaeII	ACGT	1 cut(s)	255
MaeIII	GTNAC	2 cut(s)	218, 251
MbiI	CCGCTC	1 cut(s)	357
MboII	GAAGA	4 cut(s)	16, 154, 329, 411
MhlI	GDGCHC	1 cut(s)	177
MlsI	TGGCCA	1 cut(s)	155
MluNI	TGGCCA	1 cut(s)	155
MnlI	CCTC	2 cut(s)	199, 442
Mox20I	TGGCCA	1 cut(s)	155
MscI	TGGCCA	1 cut(s)	155
MslI	CAYNNNNRTG	2 cut(s)	170, 267
Msp20I	TGGCCA	1 cut(s)	155
MspA1I	CMGCKG	2 cut(s)	381, 438
MwoI	GCNNNNNNNGC	3 cut(s)	283, 292, 390
NlaIII	CATG	2 cut(s)	112, 272
NlaIV	GGNNCC	1 cut(s)	61
NmeAIII	GCCGAG	1 cut(s)	229
NmuCI	GTSAC	1 cut(s)	251
NsbI	TGCGCA	1 cut(s)	392
NspI	RCATGY	1 cut(s)	272
PceI	AGGCCT	1 cut(s)	134
PkrI	GCNGC	7 cut(s)	76, 285, 356, 380, 383, 407, 440
PspN4I	GGNNCC	1 cut(s)	61
PstI	CTGCAG	1 cut(s)	288
PstNI	CAGNNNCTG	1 cut(s)	441
PvuII	CAGCTG	2 cut(s)	381, 438
RsaI	GTAC	2 cut(s)	61, 96
RsaNI	GTAC	2 cut(s)	60, 95
RseI	CAYNNNNRTG	2 cut(s)	170, 267
SatI	GCNGC	7 cut(s)	75, 284, 355, 379, 382, 406, 439
SduI	GDGCHC	1 cut(s)	177
SetI	ASST	8 cut(s)	65, 180, 210, 243, 253, 258, 383, 440
SfaNI	GCATC	1 cut(s)	392
SfcI	CTRYAG	1 cut(s)	284
SmiMI	CAYNNNNRTG	2 cut(s)	170, 267
SseBI	AGGCCT	1 cut(s)	134
SsiI	CCGC	1 cut(s)	355
SspI	AATATT	1 cut(s)	42
SspMI	CTAG	1 cut(s)	179
StuI	AGGCCT	1 cut(s)	134
StyI	CCWWGG	2 cut(s)	63, 223
TaaI	ACNGT	2 cut(s)	314, 417
TaiI	ACGT	1 cut(s)	258
TauI	GCSGC	1 cut(s)	357
TscAI	CASTG	1 cut(s)	334
TseFI	GTSAC	1 cut(s)	251
TseI	GCWGC	6 cut(s)	74, 283, 378, 381, 405, 438
Tsp45I	GTSAC	1 cut(s)	251
TspDTI	ATGAA	3 cut(s)	17, 102, 154
TspRI	CASTG	1 cut(s)	334
VneI	GTGCAC	1 cut(s)	173
XceI	RCATGY	1 cut(s)	272
XspI	CTAG	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.