Rw6G034300

Amino acid permease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0018825
Physical Location & Seq
Reverse (-)
58922304 .. 58922823
520 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G034300.1

Sequence Viewer

Length: 354 bp
ATGTGCAGGGCCGGAAGGAAAAACATCTGTTACTGGATTGCATCAATCTTCATCAGAAAAAGTTTGGAGTATGTTCATTGCAGCGGGAGACATCGCACTTCCTTACTCATTCAGTCATTTGCACTGATCATCATTATATCCAAGAAACTGAAGTCATCACCACCAGAAAACAAAGTAATGAAGAAGGCCACCAAAACAGGGGTGATGGTGATGACAATATTATTTACTTTGTGTGGTACCTTGGGTTATGCTGCATTTGGAGATGAAAAAGCCTTCTGGATAGTAGACTTGGCCAATGTCTTCATTGTGGTGCACCTAGTGGGTGCATTTCAGGTATATATATCTTGCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

117

Amino Acids

13.18

Weight (kDa)

9.83

Isoelectric Point (pI)

25.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 40 - 114 3.4e-11 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018825)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g44100
rosa_chinensis RchiOBHm_Chr6g0298541
rosa_laevigata RLG00000011505
rosa_multiflora Rmu_sc0004500.1_g000006
rosa_samantha Rh6BG400200 Rh6CG406100 Rh6DG392600 Rh6DG392700
rosa_wichuraiana Rw6G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 236
AccB1I GGYRCC 1 cut(s) 236
AccI GTMKAC 1 cut(s) 285
AciI CCGC 1 cut(s) 84
AcoI YGGCCR 1 cut(s) 291
AcuI CTGAAG 1 cut(s) 170
AdeI CACNNNGTG 1 cut(s) 319
AfaI GTAC 1 cut(s) 238
AfiI CCNNNNNNNGG 1 cut(s) 198
Alw21I GWGCWC 1 cut(s) 315
Alw26I GTCTC 1 cut(s) 82
Alw44I GTGCAC 1 cut(s) 311
AoxI GGCC 3 cut(s) 9, 186, 291
ApaLI GTGCAC 1 cut(s) 311
ApeKI GCWGC 2 cut(s) 81, 251
Asp718I GGTACC 1 cut(s) 236
AspS9I GGNCC 1 cut(s) 9
AsuHPI GGTGA 3 cut(s) 150, 214, 220
BaeGI GKGCMC 1 cut(s) 315
BalI TGGCCA 1 cut(s) 293
BanI GGYRCC 1 cut(s) 236
BbsI GAAGAC 1 cut(s) 292
Bbv12I GWGCWC 1 cut(s) 315
BbvI GCAGC 2 cut(s) 93, 238
BccI CCATC 1 cut(s) 199
BclI TGATCA 1 cut(s) 126
BcoDI GTCTC 1 cut(s) 82
BfaI CTAG 1 cut(s) 317
BisI GCNGC 2 cut(s) 82, 252
BlsI GCNGC 2 cut(s) 83, 253
BmgT120I GGNCC 1 cut(s) 9
BmiI GGNNCC 1 cut(s) 238
BmsI GCATC 1 cut(s) 50
BpiI GAAGAC 1 cut(s) 292
BsaJI CCNNGG 1 cut(s) 240
Bsc4I CCNNNNNNNGG 1 cut(s) 198
Bse1I ACTGG 1 cut(s) 38
Bse3DI GCAATG 1 cut(s) 76
BseDI CCNNGG 1 cut(s) 240
BseLI CCNNNNNNNGG 1 cut(s) 198
BseMI GCAATG 1 cut(s) 76
BseNI ACTGG 1 cut(s) 38
BseSI GKGCMC 1 cut(s) 315
BseXI GCAGC 2 cut(s) 93, 238
BsgI GTGCAG 1 cut(s) 25
BshFI GGCC 3 cut(s) 11, 188, 293
BshNI GGYRCC 1 cut(s) 236
BsiHKAI GWGCWC 1 cut(s) 315
BsiSI CCGG 1 cut(s) 12
BslI CCNNNNNNNGG 1 cut(s) 198
BsmAI GTCTC 1 cut(s) 82
BsnI GGCC 3 cut(s) 11, 188, 293
Bsp1286I GDGCHC 1 cut(s) 315
Bsp143I GATC 1 cut(s) 126
BspACI CCGC 1 cut(s) 84
BspANI GGCC 3 cut(s) 11, 188, 293
BspLI GGNNCC 1 cut(s) 238
BspT107I GGYRCC 1 cut(s) 236
BsrDI GCAATG 1 cut(s) 76
BsrI ACTGG 1 cut(s) 38
BssECI CCNNGG 1 cut(s) 240
BssMI GATC 1 cut(s) 126
BssT1I CCWWGG 1 cut(s) 240
BstKTI GATC 1 cut(s) 129
BstMAI GTCTC 1 cut(s) 82
BstMBI GATC 1 cut(s) 126
BstSLI GKGCMC 1 cut(s) 315
BstV1I GCAGC 2 cut(s) 93, 238
BstV2I GAAGAC 1 cut(s) 292
BsuRI GGCC 3 cut(s) 11, 188, 293
BtgZI GCGATG 1 cut(s) 77
BtsIMutI CAGTG 1 cut(s) 122
Cfr13I GGNCC 1 cut(s) 9
Csp6I GTAC 1 cut(s) 237
CviJI RGCY 4 cut(s) 11, 188, 272, 293
CviKI_1 RGCY 4 cut(s) 11, 188, 272, 293
CviQI GTAC 1 cut(s) 237
DpnI GATC 1 cut(s) 128
DpnII GATC 1 cut(s) 126
DraIII CACNNNGTG 1 cut(s) 319
EaeI YGGCCR 1 cut(s) 291
Eco130I CCWWGG 1 cut(s) 240
Eco57I CTGAAG 1 cut(s) 170
EcoT14I CCWWGG 1 cut(s) 240
ErhI CCWWGG 1 cut(s) 240
FaiI YATR 6 cut(s) 72, 137, 249, 337, 339, 341
FauI CCCGC 1 cut(s) 77
FbaI TGATCA 1 cut(s) 126
FblI GTMKAC 1 cut(s) 285
Fnu4HI GCNGC 2 cut(s) 82, 252
Fsp4HI GCNGC 2 cut(s) 82, 252
FspBI CTAG 1 cut(s) 317
GluI GCNGC 2 cut(s) 82, 252
HaeIII GGCC 3 cut(s) 11, 188, 293
HapII CCGG 1 cut(s) 12
HpaII CCGG 1 cut(s) 12
HphI GGTGA 3 cut(s) 150, 214, 220
Hpy166II GTNNAC 2 cut(s) 286, 313
Hpy188I TCNGA 1 cut(s) 56
Hpy188III TCNNGA 1 cut(s) 277
Hpy8I GTNNAC 2 cut(s) 286, 313
HpyAV CCTTC 3 cut(s) 9, 178, 283
HpyCH4V TGCA 8 cut(s) 6, 41, 81, 122, 254, 313, 326, 348
KpnI GGTACC 1 cut(s) 240
Ksp22I TGATCA 1 cut(s) 126
Kzo9I GATC 1 cut(s) 126
LpnPI CCDG 6 cut(s) 19, 25, 177, 183, 262, 317
Lsp1109I GCAGC 2 cut(s) 93, 238
LweI GCATC 1 cut(s) 50
MaeI CTAG 1 cut(s) 317
MaeIII GTNAC 1 cut(s) 29
MalI GATC 1 cut(s) 128
MboI GATC 1 cut(s) 126
MboII GAAGA 3 cut(s) 40, 193, 292
MhlI GDGCHC 1 cut(s) 315
MlsI TGGCCA 1 cut(s) 293
MluNI TGGCCA 1 cut(s) 293
Mox20I TGGCCA 1 cut(s) 293
MscI TGGCCA 1 cut(s) 293
MslI CAYNNNNRTG 1 cut(s) 308
Msp20I TGGCCA 1 cut(s) 293
MspA1I CMGCKG 1 cut(s) 84
MspI CCGG 1 cut(s) 12
NdeII GATC 1 cut(s) 126
NlaIV GGNNCC 1 cut(s) 238
PkrI GCNGC 2 cut(s) 83, 253
PspN4I GGNNCC 1 cut(s) 238
PspPI GGNCC 1 cut(s) 9
RsaI GTAC 1 cut(s) 238
RsaNI GTAC 1 cut(s) 237
RseI CAYNNNNRTG 1 cut(s) 308
SatI GCNGC 2 cut(s) 82, 252
Sau3AI GATC 1 cut(s) 126
Sau96I GGNCC 1 cut(s) 9
SduI GDGCHC 1 cut(s) 315
SetI ASST 3 cut(s) 242, 318, 336
SfaNI GCATC 1 cut(s) 50
SmiMI CAYNNNNRTG 1 cut(s) 308
SsiI CCGC 1 cut(s) 84
SspI AATATT 1 cut(s) 219
SspMI CTAG 1 cut(s) 317
StyI CCWWGG 1 cut(s) 240
TscAI CASTG 1 cut(s) 129
TseI GCWGC 2 cut(s) 81, 251
TspDTI ATGAA 5 cut(s) 40, 65, 194, 279, 292
TspRI CASTG 1 cut(s) 129
VneI GTGCAC 1 cut(s) 311
XmiI GTMKAC 1 cut(s) 285
XspI CTAG 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.