Rh6DG392700

Amino acid permease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0018825
Physical Location & Seq
Reverse (-)
58473996 .. 58475470
1475 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG392700.1

Sequence Viewer

Length: 429 bp
ATGGCATTGTCGAGGAAGACCTGGGATCTAAAAAGCTCGAAGGTGTTGTTGCTTACATGCATGGGTTTGATAGGTCGGAGATGGCCGCAGATGGCCAGGAAGCTTTATCATGAGTATAAAAAGATGAAGGTCGCCGAAAAAGAGAGAGTTGGAGAGGTTATGAAACTGAAGTCATCACCACCAGAAAACAAAGTGATGAAGAAGGCCAGCAAAACAGGGGTGATGGTGATGACAATATTATTTACTTTGTGTGGTACCTTGGGTTATGCTGCATTTGGAGATGAAAAAGTACCAGAAAATCTCATGGCTGGTTTTCTATCTCACAAGGCCTTCTGGATAGTGGACTTGGCCAATGTCTTCATTGTGGTGCACCTAGTGGGTGCATTTCAGGTATTTGCCCAACCAGTGTACTGCTTGATTGAAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

142

Amino Acids

16.06

Weight (kDa)

9.68

Isoelectric Point (pI)

39.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 57 - 141 2.3e-18 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018825)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g44100
rosa_chinensis RchiOBHm_Chr6g0298541
rosa_laevigata RLG00000011505
rosa_multiflora Rmu_sc0004500.1_g000006
rosa_samantha Rh6BG400200 Rh6CG406100 Rh6DG392600 Rh6DG392700
rosa_wichuraiana Rw6G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 254
AccB1I GGYRCC 1 cut(s) 254
AciI CCGC 1 cut(s) 86
AclWI GGATC 1 cut(s) 33
AcoI YGGCCR 3 cut(s) 83, 93, 348
AcuI CTGAAG 1 cut(s) 188
AdeI CACNNNGTG 1 cut(s) 376
AfaI GTAC 3 cut(s) 256, 291, 410
AgsI TTSAA 1 cut(s) 422
AjnI CCWGG 2 cut(s) 20, 95
AluBI AGCT 2 cut(s) 36, 103
AluI AGCT 2 cut(s) 36, 103
Alw21I GWGCWC 1 cut(s) 372
Alw44I GTGCAC 1 cut(s) 368
AlwI GGATC 1 cut(s) 33
AoxI GGCC 5 cut(s) 83, 93, 204, 327, 348
ApaLI GTGCAC 1 cut(s) 368
ApeKI GCWGC 1 cut(s) 269
Asp718I GGTACC 1 cut(s) 254
AsuHPI GGTGA 3 cut(s) 168, 232, 238
BaeGI GKGCMC 1 cut(s) 372
BalI TGGCCA 2 cut(s) 95, 350
BanI GGYRCC 1 cut(s) 254
BbsI GAAGAC 2 cut(s) 23, 349
Bbv12I GWGCWC 1 cut(s) 372
BbvI GCAGC 1 cut(s) 256
BccI CCATC 3 cut(s) 75, 85, 217
BciT130I CCWGG 2 cut(s) 22, 97
BfaI CTAG 1 cut(s) 374
BisI GCNGC 2 cut(s) 86, 270
BlsI GCNGC 2 cut(s) 87, 271
Bme1390I CCNGG 2 cut(s) 22, 97
BmiI GGNNCC 1 cut(s) 256
BmrFI CCNGG 2 cut(s) 22, 97
BpiI GAAGAC 2 cut(s) 23, 349
BsaJI CCNNGG 2 cut(s) 21, 258
Bse1I ACTGG 1 cut(s) 404
BseBI CCWGG 2 cut(s) 22, 97
BseDI CCNNGG 2 cut(s) 21, 258
BseNI ACTGG 1 cut(s) 404
BseSI GKGCMC 1 cut(s) 372
BseXI GCAGC 1 cut(s) 256
BshFI GGCC 5 cut(s) 85, 95, 206, 329, 350
BshNI GGYRCC 1 cut(s) 254
BsiHKAI GWGCWC 1 cut(s) 372
BsnI GGCC 5 cut(s) 85, 95, 206, 329, 350
Bsp1286I GDGCHC 1 cut(s) 372
Bsp143I GATC 1 cut(s) 25
BspACI CCGC 1 cut(s) 86
BspANI GGCC 5 cut(s) 85, 95, 206, 329, 350
BspHI TCATGA 1 cut(s) 109
BspLI GGNNCC 1 cut(s) 256
BspPI GGATC 1 cut(s) 33
BspT107I GGYRCC 1 cut(s) 254
BsrI ACTGG 1 cut(s) 404
BssECI CCNNGG 2 cut(s) 21, 258
BssMI GATC 1 cut(s) 25
BssT1I CCWWGG 1 cut(s) 258
Bst2UI CCWGG 2 cut(s) 22, 97
BstC8I GCNNGC 1 cut(s) 208
BstKTI GATC 1 cut(s) 28
BstMBI GATC 1 cut(s) 25
BstNI CCWGG 2 cut(s) 22, 97
BstNSI RCATGY 1 cut(s) 60
BstSCI CCNGG 2 cut(s) 20, 95
BstSLI GKGCMC 1 cut(s) 372
BstV1I GCAGC 1 cut(s) 256
BstV2I GAAGAC 2 cut(s) 23, 349
BstX2I RGATCY 1 cut(s) 25
BstYI RGATCY 1 cut(s) 25
BsuRI GGCC 5 cut(s) 85, 95, 206, 329, 350
BtsIMutI CAGTG 1 cut(s) 411
Cac8I GCNNGC 1 cut(s) 208
CciI TCATGA 1 cut(s) 109
Csp6I GTAC 3 cut(s) 255, 290, 409
CviAII CATG 4 cut(s) 57, 61, 110, 304
CviJI RGCY 8 cut(s) 36, 85, 95, 103, 206, 308, 329, 350
CviKI_1 RGCY 8 cut(s) 36, 85, 95, 103, 206, 308, 329, 350
CviQI GTAC 3 cut(s) 255, 290, 409
DpnI GATC 1 cut(s) 27
DpnII GATC 1 cut(s) 25
DraIII CACNNNGTG 1 cut(s) 376
EaeI YGGCCR 3 cut(s) 83, 93, 348
Eco130I CCWWGG 1 cut(s) 258
Eco147I AGGCCT 1 cut(s) 329
Eco57I CTGAAG 1 cut(s) 188
EcoRII CCWGG 2 cut(s) 20, 95
EcoT14I CCWWGG 1 cut(s) 258
EcoT22I ATGCAT 1 cut(s) 62
ErhI CCWWGG 1 cut(s) 258
FaeI CATG 4 cut(s) 60, 64, 113, 307
FaiI YATR 7 cut(s) 58, 62, 111, 117, 161, 267, 305
FatI CATG 4 cut(s) 56, 60, 109, 303
Fnu4HI GCNGC 2 cut(s) 86, 270
Fsp4HI GCNGC 2 cut(s) 86, 270
FspBI CTAG 1 cut(s) 374
GluI GCNGC 2 cut(s) 86, 270
HaeIII GGCC 5 cut(s) 85, 95, 206, 329, 350
Hin1II CATG 4 cut(s) 60, 64, 113, 307
HindIII AAGCTT 1 cut(s) 101
HphI GGTGA 3 cut(s) 168, 232, 238
Hpy166II GTNNAC 3 cut(s) 343, 370, 409
Hpy188I TCNGA 1 cut(s) 78
Hpy188III TCNNGA 2 cut(s) 110, 334
Hpy8I GTNNAC 3 cut(s) 343, 370, 409
HpyAV CCTTC 4 cut(s) 34, 121, 196, 340
HpyCH4V TGCA 4 cut(s) 60, 272, 370, 383
Hsp92II CATG 4 cut(s) 60, 64, 113, 307
KpnI GGTACC 1 cut(s) 258
Kzo9I GATC 1 cut(s) 25
Lsp1109I GCAGC 1 cut(s) 256
MaeI CTAG 1 cut(s) 374
MalI GATC 1 cut(s) 27
MboI GATC 1 cut(s) 25
MboII GAAGA 3 cut(s) 28, 211, 349
MflI RGATCY 1 cut(s) 25
MhlI GDGCHC 1 cut(s) 372
MlsI TGGCCA 2 cut(s) 95, 350
MluNI TGGCCA 2 cut(s) 95, 350
MmeI TCCRAC 2 cut(s) 56, 130
MnlI CCTC 2 cut(s) 6, 148
Mox20I TGGCCA 2 cut(s) 95, 350
Mph1103I ATGCAT 1 cut(s) 62
MscI TGGCCA 2 cut(s) 95, 350
MslI CAYNNNNRTG 1 cut(s) 365
Msp20I TGGCCA 2 cut(s) 95, 350
MspR9I CCNGG 2 cut(s) 22, 97
MvaI CCWGG 2 cut(s) 22, 97
NdeII GATC 1 cut(s) 25
NlaIII CATG 4 cut(s) 60, 64, 113, 307
NlaIV GGNNCC 1 cut(s) 256
NsiI ATGCAT 1 cut(s) 62
NspI RCATGY 1 cut(s) 60
PagI TCATGA 1 cut(s) 109
PceI AGGCCT 1 cut(s) 329
PkrI GCNGC 2 cut(s) 87, 271
Psp6I CCWGG 2 cut(s) 20, 95
PspGI CCWGG 2 cut(s) 20, 95
PspN4I GGNNCC 1 cut(s) 256
PsuI RGATCY 1 cut(s) 25
RsaI GTAC 3 cut(s) 256, 291, 410
RsaNI GTAC 3 cut(s) 255, 290, 409
RseI CAYNNNNRTG 1 cut(s) 365
SatI GCNGC 2 cut(s) 86, 270
Sau3AI GATC 1 cut(s) 25
ScrFI CCNGG 2 cut(s) 22, 97
SduI GDGCHC 1 cut(s) 372
SmiMI CAYNNNNRTG 1 cut(s) 365
SseBI AGGCCT 1 cut(s) 329
SsiI CCGC 1 cut(s) 86
SspI AATATT 1 cut(s) 237
SspMI CTAG 1 cut(s) 374
StuI AGGCCT 1 cut(s) 329
StyD4I CCNGG 2 cut(s) 20, 95
StyI CCWWGG 1 cut(s) 258
TaqI TCGA 2 cut(s) 11, 38
TatI WGTACW 1 cut(s) 408
TauI GCSGC 1 cut(s) 88
TscAI CASTG 1 cut(s) 411
TseI GCWGC 1 cut(s) 269
TspDTI ATGAA 5 cut(s) 140, 176, 212, 297, 349
TspRI CASTG 1 cut(s) 411
VneI GTGCAC 1 cut(s) 368
XceI RCATGY 1 cut(s) 60
XspI CTAG 1 cut(s) 374
Zsp2I ATGCAT 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.