RLG00000011505

Amino acid permease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0018825
Physical Location & Seq
Forward (+)
10003832 .. 10004418
587 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011505

Sequence Viewer

Length: 390 bp
ATGAAGAAGGCCACCAAAACAGGGGTGATGGTGATGACAATATTATTCACCTTGTGTGGTACCTTGGGTTATGCTGCATTTGGAGATGAAAAAGTACCAGAAAATCTCATGGCTGGTTTTCTATCTCATAAGGCCTTCTGGATAGTGGAATTGGCCAATGTCTTCATTGTGGTGCACCTAGTGGGTGCATTTCAGGTATTTGCCCAACCAGTTTACCGCTTGATTGAAGTAACGGCCTTTGTGATTTTGGCTACTGTGATTGCCACATCACTGCCTTTCTTCTATTGGCTACTGGCCGCTCACCATCTACTTCCCGTTGCAGCTGCACATTGCGCAAAAGATGATGCAGCGAGCAACCGTCCATTGGTTTGGCCTCCAGCTGCTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

130

Amino Acids

14.07

Weight (kDa)

6.96

Isoelectric Point (pI)

29.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 1 - 82 6.7e-16 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018825)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g44100
rosa_chinensis RchiOBHm_Chr6g0298541
rosa_laevigata RLG00000011505
rosa_multiflora Rmu_sc0004500.1_g000006
rosa_samantha Rh6BG400200 Rh6CG406100 Rh6DG392600 Rh6DG392700
rosa_wichuraiana Rw6G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 334
Acc65I GGTACC 1 cut(s) 59
AccB1I GGYRCC 1 cut(s) 59
AccBSI CCGCTC 1 cut(s) 299
AciI CCGC 2 cut(s) 217, 297
AcoI YGGCCR 2 cut(s) 153, 294
AdeI CACNNNGTG 2 cut(s) 54, 181
AfaI GTAC 2 cut(s) 61, 96
AfiI CCNNNNNNNGG 2 cut(s) 21, 364
AgsI TTSAA 1 cut(s) 227
AluBI AGCT 2 cut(s) 323, 380
AluI AGCT 2 cut(s) 323, 380
Alw21I GWGCWC 1 cut(s) 177
Alw44I GTGCAC 1 cut(s) 173
AlwNI CAGNNNCTG 1 cut(s) 383
AoxI GGCC 6 cut(s) 9, 132, 153, 234, 294, 371
ApaLI GTGCAC 1 cut(s) 173
ApeKI GCWGC 5 cut(s) 74, 320, 323, 347, 380
Asp718I GGTACC 1 cut(s) 59
AspLEI GCGC 1 cut(s) 335
AsuHPI GGTGA 4 cut(s) 37, 40, 43, 293
BaeGI GKGCMC 1 cut(s) 177
BalI TGGCCA 1 cut(s) 155
BanI GGYRCC 1 cut(s) 59
BbsI GAAGAC 1 cut(s) 154
Bbv12I GWGCWC 1 cut(s) 177
BbvI GCAGC 5 cut(s) 61, 310, 332, 359, 367
BccI CCATC 2 cut(s) 22, 312
BceAI ACGGC 1 cut(s) 249
BfaI CTAG 1 cut(s) 179
BisI GCNGC 6 cut(s) 75, 297, 321, 324, 348, 381
BlsI GCNGC 6 cut(s) 76, 298, 322, 325, 349, 382
BmiI GGNNCC 1 cut(s) 61
BmsI GCATC 1 cut(s) 334
BpiI GAAGAC 1 cut(s) 154
BpmI CTGGAG 1 cut(s) 360
BsaJI CCNNGG 1 cut(s) 63
Bsc4I CCNNNNNNNGG 2 cut(s) 21, 364
Bse1I ACTGG 2 cut(s) 209, 297
Bse3DI GCAATG 1 cut(s) 328
BseDI CCNNGG 1 cut(s) 63
BseLI CCNNNNNNNGG 2 cut(s) 21, 364
BseMI GCAATG 1 cut(s) 328
BseMII CTCAG 1 cut(s) 375
BseNI ACTGG 2 cut(s) 209, 297
BseSI GKGCMC 1 cut(s) 177
BseXI GCAGC 5 cut(s) 61, 310, 332, 359, 367
BsgI GTGCAG 1 cut(s) 309
BshFI GGCC 6 cut(s) 11, 134, 155, 236, 296, 373
BshNI GGYRCC 1 cut(s) 59
BsiHKAI GWGCWC 1 cut(s) 177
BslI CCNNNNNNNGG 2 cut(s) 21, 364
BsnI GGCC 6 cut(s) 11, 134, 155, 236, 296, 373
Bsp1286I GDGCHC 1 cut(s) 177
BspACI CCGC 2 cut(s) 217, 297
BspANI GGCC 6 cut(s) 11, 134, 155, 236, 296, 373
BspCNI CTCAG 1 cut(s) 376
BspLI GGNNCC 1 cut(s) 61
BspT107I GGYRCC 1 cut(s) 59
BsrBI CCGCTC 1 cut(s) 299
BsrDI GCAATG 1 cut(s) 328
BsrI ACTGG 2 cut(s) 209, 297
BssECI CCNNGG 1 cut(s) 63
BssT1I CCWWGG 1 cut(s) 63
Bst4CI ACNGT 2 cut(s) 256, 359
BstC8I GCNNGC 1 cut(s) 352
BstDEI CTNAG 1 cut(s) 384
BstHHI GCGC 1 cut(s) 335
BstMWI GCNNNNNNNGC 1 cut(s) 332
BstSLI GKGCMC 1 cut(s) 177
BstV1I GCAGC 5 cut(s) 61, 310, 332, 359, 367
BstV2I GAAGAC 1 cut(s) 154
BstXI CCANNNNNNTGG 1 cut(s) 369
BsuRI GGCC 6 cut(s) 11, 134, 155, 236, 296, 373
BtsI GCAGTG 1 cut(s) 269
BtsIMutI CAGTG 1 cut(s) 269
Cac8I GCNNGC 1 cut(s) 352
CaiI CAGNNNCTG 1 cut(s) 383
CfoI GCGC 1 cut(s) 335
Csp6I GTAC 2 cut(s) 60, 95
CviAII CATG 1 cut(s) 109
CviQI GTAC 2 cut(s) 60, 95
DdeI CTNAG 1 cut(s) 384
DraIII CACNNNGTG 2 cut(s) 54, 181
EaeI YGGCCR 2 cut(s) 153, 294
Eco130I CCWWGG 1 cut(s) 63
Eco147I AGGCCT 1 cut(s) 134
EcoT14I CCWWGG 1 cut(s) 63
ErhI CCWWGG 1 cut(s) 63
FaeI CATG 1 cut(s) 112
FaiI YATR 3 cut(s) 72, 110, 129
FatI CATG 1 cut(s) 108
Fnu4HI GCNGC 6 cut(s) 75, 297, 321, 324, 348, 381
Fsp4HI GCNGC 6 cut(s) 75, 297, 321, 324, 348, 381
FspBI CTAG 1 cut(s) 179
FspI TGCGCA 1 cut(s) 334
GlaI GCGC 1 cut(s) 334
GluI GCNGC 6 cut(s) 75, 297, 321, 324, 348, 381
GsuI CTGGAG 1 cut(s) 360
HaeIII GGCC 6 cut(s) 11, 134, 155, 236, 296, 373
HhaI GCGC 1 cut(s) 335
Hin1II CATG 1 cut(s) 112
Hin6I GCGC 1 cut(s) 333
HinP1I GCGC 1 cut(s) 333
HphI GGTGA 4 cut(s) 37, 40, 43, 293
Hpy166II GTNNAC 2 cut(s) 175, 214
Hpy188III TCNNGA 1 cut(s) 139
Hpy8I GTNNAC 2 cut(s) 175, 214
HpyAV CCTTC 1 cut(s) 145
HpyCH4III ACNGT 2 cut(s) 256, 359
HpyCH4V TGCA 6 cut(s) 77, 175, 188, 320, 326, 347
HpyF10VI GCNNNNNNNGC 1 cut(s) 332
HpyF3I CTNAG 1 cut(s) 384
Hsp92II CATG 1 cut(s) 112
HspAI GCGC 1 cut(s) 333
KpnI GGTACC 1 cut(s) 63
LpnPI CCDG 7 cut(s) 6, 99, 111, 124, 179, 222, 278
Lsp1109I GCAGC 5 cut(s) 61, 310, 332, 359, 367
LweI GCATC 1 cut(s) 334
MaeI CTAG 1 cut(s) 179
MaeIII GTNAC 1 cut(s) 229
MbiI CCGCTC 1 cut(s) 299
MboII GAAGA 3 cut(s) 16, 154, 271
MhlI GDGCHC 1 cut(s) 177
MlsI TGGCCA 1 cut(s) 155
MluCI AATT 1 cut(s) 149
MluNI TGGCCA 1 cut(s) 155
MnlI CCTC 1 cut(s) 384
Mox20I TGGCCA 1 cut(s) 155
MscI TGGCCA 1 cut(s) 155
MslI CAYNNNNRTG 1 cut(s) 170
Msp20I TGGCCA 1 cut(s) 155
MspA1I CMGCKG 2 cut(s) 323, 380
MwoI GCNNNNNNNGC 1 cut(s) 332
NlaIII CATG 1 cut(s) 112
NlaIV GGNNCC 1 cut(s) 61
NsbI TGCGCA 1 cut(s) 334
PceI AGGCCT 1 cut(s) 134
PkrI GCNGC 6 cut(s) 76, 298, 322, 325, 349, 382
PspN4I GGNNCC 1 cut(s) 61
PstNI CAGNNNCTG 1 cut(s) 383
PvuII CAGCTG 2 cut(s) 323, 380
RsaI GTAC 2 cut(s) 61, 96
RsaNI GTAC 2 cut(s) 60, 95
RseI CAYNNNNRTG 1 cut(s) 170
SatI GCNGC 6 cut(s) 75, 297, 321, 324, 348, 381
SduI GDGCHC 1 cut(s) 177
SetI ASST 6 cut(s) 53, 65, 180, 198, 325, 382
SfaNI GCATC 1 cut(s) 334
SmiMI CAYNNNNRTG 1 cut(s) 170
Sse9I AATT 1 cut(s) 149
SseBI AGGCCT 1 cut(s) 134
SsiI CCGC 2 cut(s) 217, 297
SspI AATATT 1 cut(s) 42
SspMI CTAG 1 cut(s) 179
StuI AGGCCT 1 cut(s) 134
StyI CCWWGG 1 cut(s) 63
TaaI ACNGT 2 cut(s) 256, 359
TasI AATT 1 cut(s) 149
TauI GCSGC 1 cut(s) 299
TscAI CASTG 1 cut(s) 276
TseI GCWGC 5 cut(s) 74, 320, 323, 347, 380
TspDTI ATGAA 3 cut(s) 17, 102, 154
TspRI CASTG 1 cut(s) 276
VneI GTGCAC 1 cut(s) 173
XspI CTAG 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.