Rh6DG392600

Amino acid permease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0018825
Physical Location & Seq
Reverse (-)
58466241 .. 58473917
7677 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG392600.1

Sequence Viewer

Length: 600 bp
ATGCTTCGCTTACGCTGCAGAACGGGCTTTGTGCTTTTGGCTACTGTGATTGCCACAGCACTGCCTTTCTTCTATTGGCTACTGGCCGCTCACCATCTACTTCCCGTTGCAGCTGCACATTGCGCAAAAGAAGATGCAGCGAGCAACCGTCCATTGGTTTGGCCTCCAGCTGCTGAGAAACTGAAGTCATCACCACCAGAAAACAAAGTGATGAAGAAGGCCAGCAAAACAGGGGTGATGGTGATGACAATATTATTTACTTTGTGTGGTACCTTGGGTTATGCTGCATTTGGAGATGAAAAAGTACCAGAAAATCTCATGGCTGGTTTTCTATCTCACAAGGCCTTCTGGATAGTGGACTTGGCCAATGTCTTCATTGTGGTGCACCTAGTGGGTGCATTTCAGGTATTTGCCCAACCAGTGTACTGCTTGATTGAAGTAACGGGCTTTGTGCTTTTGGCTACTGTGATTGCCACAGCACTGCCTTTCTTCTATTGGCTACTGGCCGCTCACCATCTACTTCCCGTTGCAGCTGCACATTGCGCAAAAGAAGATGCAGCGAGCAACCGTCCATTGGTTTGGCCTCCAGCTGCTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

199

Amino Acids

21.65

Weight (kDa)

8.62

Isoelectric Point (pI)

38.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 58 - 147 7.7e-18 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018825)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g44100
rosa_chinensis RchiOBHm_Chr6g0298541
rosa_laevigata RLG00000011505
rosa_multiflora Rmu_sc0004500.1_g000006
rosa_samantha Rh6BG400200 Rh6CG406100 Rh6DG392600 Rh6DG392700
rosa_wichuraiana Rw6G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 124, 544
Acc65I GGTACC 1 cut(s) 269
AccB1I GGYRCC 1 cut(s) 269
AccBSI CCGCTC 2 cut(s) 89, 509
AciI CCGC 2 cut(s) 87, 507
AcoI YGGCCR 3 cut(s) 84, 363, 504
AcuI CTGAAG 1 cut(s) 203
AdeI CACNNNGTG 1 cut(s) 391
AfaI GTAC 3 cut(s) 271, 306, 425
AfiI CCNNNNNNNGG 2 cut(s) 154, 574
AgsI TTSAA 1 cut(s) 437
AluBI AGCT 4 cut(s) 113, 170, 533, 590
AluI AGCT 4 cut(s) 113, 170, 533, 590
Alw21I GWGCWC 1 cut(s) 387
Alw44I GTGCAC 1 cut(s) 383
AlwNI CAGNNNCTG 2 cut(s) 173, 593
AoxI GGCC 7 cut(s) 84, 161, 219, 342, 363, 504, 581
ApaLI GTGCAC 1 cut(s) 383
Asp718I GGTACC 1 cut(s) 269
AspLEI GCGC 2 cut(s) 125, 545
AsuHPI GGTGA 5 cut(s) 83, 183, 247, 253, 503
BaeGI GKGCMC 1 cut(s) 387
BalI TGGCCA 1 cut(s) 365
BanI GGYRCC 1 cut(s) 269
BbsI GAAGAC 1 cut(s) 364
Bbv12I GWGCWC 1 cut(s) 387
BccI CCATC 3 cut(s) 102, 232, 522
BfaI CTAG 1 cut(s) 389
BfmI CTRYAG 1 cut(s) 16
BmiI GGNNCC 1 cut(s) 271
BmsI GCATC 2 cut(s) 124, 544
BpiI GAAGAC 1 cut(s) 364
BpmI CTGGAG 2 cut(s) 150, 570
BsaJI CCNNGG 1 cut(s) 273
Bsc4I CCNNNNNNNGG 2 cut(s) 154, 574
Bse1I ACTGG 3 cut(s) 87, 419, 507
Bse3DI GCAATG 2 cut(s) 118, 538
BseDI CCNNGG 1 cut(s) 273
BseLI CCNNNNNNNGG 2 cut(s) 154, 574
BseMI GCAATG 2 cut(s) 118, 538
BseMII CTCAG 2 cut(s) 165, 585
BseNI ACTGG 3 cut(s) 87, 419, 507
BseSI GKGCMC 1 cut(s) 387
BsgI GTGCAG 2 cut(s) 99, 519
BshFI GGCC 7 cut(s) 86, 163, 221, 344, 365, 506, 583
BshNI GGYRCC 1 cut(s) 269
BsiHKAI GWGCWC 1 cut(s) 387
BslI CCNNNNNNNGG 2 cut(s) 154, 574
BsnI GGCC 7 cut(s) 86, 163, 221, 344, 365, 506, 583
Bsp1286I GDGCHC 1 cut(s) 387
BspACI CCGC 2 cut(s) 87, 507
BspANI GGCC 7 cut(s) 86, 163, 221, 344, 365, 506, 583
BspCNI CTCAG 2 cut(s) 166, 586
BspLI GGNNCC 1 cut(s) 271
BspMAI CTGCAG 1 cut(s) 20
BspT107I GGYRCC 1 cut(s) 269
BsrBI CCGCTC 2 cut(s) 89, 509
BsrDI GCAATG 2 cut(s) 118, 538
BsrI ACTGG 3 cut(s) 87, 419, 507
BssECI CCNNGG 1 cut(s) 273
BssT1I CCWWGG 1 cut(s) 273
Bst4CI ACNGT 4 cut(s) 46, 149, 466, 569
BstC8I GCNNGC 3 cut(s) 142, 223, 562
BstDEI CTNAG 2 cut(s) 174, 594
BstHHI GCGC 2 cut(s) 125, 545
BstMWI GCNNNNNNNGC 4 cut(s) 15, 24, 122, 542
BstSFI CTRYAG 1 cut(s) 16
BstSLI GKGCMC 1 cut(s) 387
BstV2I GAAGAC 1 cut(s) 364
BstXI CCANNNNNNTGG 2 cut(s) 159, 579
BsuRI GGCC 7 cut(s) 86, 163, 221, 344, 365, 506, 583
BtsI GCAGTG 2 cut(s) 59, 479
BtsIMutI CAGTG 3 cut(s) 59, 426, 479
Cac8I GCNNGC 3 cut(s) 142, 223, 562
CaiI CAGNNNCTG 2 cut(s) 173, 593
CfoI GCGC 2 cut(s) 125, 545
Csp6I GTAC 3 cut(s) 270, 305, 424
CviAII CATG 1 cut(s) 319
CviQI GTAC 3 cut(s) 270, 305, 424
DdeI CTNAG 2 cut(s) 174, 594
DraIII CACNNNGTG 1 cut(s) 391
EaeI YGGCCR 3 cut(s) 84, 363, 504
Eco130I CCWWGG 1 cut(s) 273
Eco147I AGGCCT 1 cut(s) 344
Eco57I CTGAAG 1 cut(s) 203
EcoT14I CCWWGG 1 cut(s) 273
ErhI CCWWGG 1 cut(s) 273
FaeI CATG 1 cut(s) 322
FaiI YATR 2 cut(s) 282, 320
FatI CATG 1 cut(s) 318
FspBI CTAG 1 cut(s) 389
FspI TGCGCA 2 cut(s) 124, 544
GlaI GCGC 2 cut(s) 124, 544
GsuI CTGGAG 2 cut(s) 150, 570
HaeIII GGCC 7 cut(s) 86, 163, 221, 344, 365, 506, 583
HhaI GCGC 2 cut(s) 125, 545
Hin1II CATG 1 cut(s) 322
Hin6I GCGC 2 cut(s) 123, 543
HinP1I GCGC 2 cut(s) 123, 543
HphI GGTGA 5 cut(s) 83, 183, 247, 253, 503
Hpy166II GTNNAC 3 cut(s) 358, 385, 424
Hpy188III TCNNGA 1 cut(s) 349
Hpy8I GTNNAC 3 cut(s) 358, 385, 424
HpyAV CCTTC 2 cut(s) 211, 355
HpyCH4III ACNGT 4 cut(s) 46, 149, 466, 569
HpyF10VI GCNNNNNNNGC 4 cut(s) 15, 24, 122, 542
HpyF3I CTNAG 2 cut(s) 174, 594
Hsp92II CATG 1 cut(s) 322
HspAI GCGC 2 cut(s) 123, 543
KpnI GGTACC 1 cut(s) 273
LweI GCATC 2 cut(s) 124, 544
MaeI CTAG 1 cut(s) 389
MaeIII GTNAC 1 cut(s) 439
MbiI CCGCTC 2 cut(s) 89, 509
MboII GAAGA 6 cut(s) 61, 143, 226, 364, 481, 563
MhlI GDGCHC 1 cut(s) 387
MlsI TGGCCA 1 cut(s) 365
MluNI TGGCCA 1 cut(s) 365
MnlI CCTC 2 cut(s) 174, 594
Mox20I TGGCCA 1 cut(s) 365
MscI TGGCCA 1 cut(s) 365
MslI CAYNNNNRTG 1 cut(s) 380
Msp20I TGGCCA 1 cut(s) 365
MspA1I CMGCKG 4 cut(s) 113, 170, 533, 590
MwoI GCNNNNNNNGC 4 cut(s) 15, 24, 122, 542
NlaIII CATG 1 cut(s) 322
NlaIV GGNNCC 1 cut(s) 271
NsbI TGCGCA 2 cut(s) 124, 544
PceI AGGCCT 1 cut(s) 344
PspN4I GGNNCC 1 cut(s) 271
PstI CTGCAG 1 cut(s) 20
PstNI CAGNNNCTG 2 cut(s) 173, 593
PvuII CAGCTG 4 cut(s) 113, 170, 533, 590
RsaI GTAC 3 cut(s) 271, 306, 425
RsaNI GTAC 3 cut(s) 270, 305, 424
RseI CAYNNNNRTG 1 cut(s) 380
SduI GDGCHC 1 cut(s) 387
SetI ASST 7 cut(s) 115, 172, 275, 390, 408, 535, 592
SfaNI GCATC 2 cut(s) 124, 544
SfcI CTRYAG 1 cut(s) 16
SmiMI CAYNNNNRTG 1 cut(s) 380
SseBI AGGCCT 1 cut(s) 344
SsiI CCGC 2 cut(s) 87, 507
SspI AATATT 1 cut(s) 252
SspMI CTAG 1 cut(s) 389
StuI AGGCCT 1 cut(s) 344
StyI CCWWGG 1 cut(s) 273
TaaI ACNGT 4 cut(s) 46, 149, 466, 569
TatI WGTACW 1 cut(s) 423
TauI GCSGC 2 cut(s) 89, 509
TscAI CASTG 3 cut(s) 66, 426, 486
TspDTI ATGAA 3 cut(s) 227, 312, 364
TspRI CASTG 3 cut(s) 66, 426, 486
VneI GTGCAC 1 cut(s) 383
XspI CTAG 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.