Rh6BG400200

Amino acid permease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0018825
Physical Location & Seq
Reverse (-)
62763116 .. 62769328
6213 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG400200.1

Sequence Viewer

Length: 702 bp
ATGGCATCGTCGAGGAAGACCTGGGATCTAAAAAGCTCGAAGGTGTTGTTGCTTATATGCATGGGTTTGATAGGTCGGAGATGGCCGCAGATGGCCAGGAAGCTTTACCATGAGTATAAGAAGATGAAGGTCACCGAAAAAGAGAGAGTTGGAGAGGGCTATCCAGAATTCGATTTGCCATCAAGAGAAGAATTGGACTCTCTATTGAAAAATCATCTGGGGGCCGGAAGGAAAAACATCTGTTACTGGATTGCATCAATCTTCATCAGAAAAAGTTTGGAGTATATTCATTGCAGCCGGAGACATCGCACTTCCTTACTCATTCAGTCATTTGCAGTGATCATCATTGATATCCAAGAAATTGAAGTCATCACCACCAGAAAACAAAGTGATGAAGAAGGCCACCAAAACAGGGGTGATGGTGATGACAATATTATTTACTTTGCCTTCTGGATAGTGGACTTGGCCAATGTCTTCATTGTGGTGCACCTAGTGGGTGCATTTCAGGTATTTGCCCAACCAGTGTACTGCTTGATTGAAGTAACGGGCTTTGTGCTTTTGGCTACTGTGATTGCCACAGCACTGCCTTTCTTCTATTGGCTACTGGCCGCTCACCATCTACTTCCCGTTGCAGCTGCACATTGCGCAAAAGAAGATGCAGCGAGCAACCGTCCATTGGTTTGGCCTCCAGCTGCTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

233

Amino Acids

26.64

Weight (kDa)

8.24

Isoelectric Point (pI)

51.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018825)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g44100
rosa_chinensis RchiOBHm_Chr6g0298541
rosa_laevigata RLG00000011505
rosa_multiflora Rmu_sc0004500.1_g000006
rosa_samantha Rh6BG400200 Rh6CG406100 Rh6DG392600 Rh6DG392700
rosa_wichuraiana Rw6G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 646
AccBSI CCGCTC 1 cut(s) 611
AciI CCGC 2 cut(s) 86, 609
AclWI GGATC 1 cut(s) 33
AcoI YGGCCR 4 cut(s) 83, 93, 465, 606
AcsI RAATTY 1 cut(s) 167
AdeI CACNNNGTG 1 cut(s) 493
AfaI GTAC 1 cut(s) 527
AfiI CCNNNNNNNGG 2 cut(s) 412, 676
AgsI TTSAA 3 cut(s) 208, 365, 539
AjnI CCWGG 2 cut(s) 20, 95
AluBI AGCT 4 cut(s) 36, 103, 635, 692
AluI AGCT 4 cut(s) 36, 103, 635, 692
Alw21I GWGCWC 1 cut(s) 489
Alw26I GTCTC 1 cut(s) 295
Alw44I GTGCAC 1 cut(s) 485
AlwI GGATC 1 cut(s) 33
AlwNI CAGNNNCTG 1 cut(s) 695
AoxI GGCC 7 cut(s) 83, 93, 222, 400, 465, 606, 683
ApaLI GTGCAC 1 cut(s) 485
ApeKI GCWGC 5 cut(s) 294, 632, 635, 659, 692
ApoI RAATTY 1 cut(s) 167
AspLEI GCGC 1 cut(s) 647
AspS9I GGNCC 1 cut(s) 222
AsuHPI GGTGA 5 cut(s) 124, 364, 428, 434, 605
BaeGI GKGCMC 1 cut(s) 489
BalI TGGCCA 2 cut(s) 95, 467
BbsI GAAGAC 2 cut(s) 23, 466
Bbv12I GWGCWC 1 cut(s) 489
BbvI GCAGC 5 cut(s) 306, 622, 644, 671, 679
BccI CCATC 5 cut(s) 75, 85, 187, 413, 624
BciT130I CCWGG 2 cut(s) 22, 97
BclI TGATCA 1 cut(s) 339
BcoDI GTCTC 1 cut(s) 295
BfaI CTAG 1 cut(s) 491
BisI GCNGC 7 cut(s) 86, 295, 609, 633, 636, 660, 693
BlsI GCNGC 7 cut(s) 87, 296, 610, 634, 637, 661, 694
Bme1390I CCNGG 2 cut(s) 22, 97
BmgT120I GGNCC 1 cut(s) 222
BmiI GGNNCC 1 cut(s) 223
BmrFI CCNGG 2 cut(s) 22, 97
BmsI GCATC 3 cut(s) 14, 263, 646
BpiI GAAGAC 2 cut(s) 23, 466
BpmI CTGGAG 1 cut(s) 672
BsaJI CCNNGG 1 cut(s) 21
Bsc4I CCNNNNNNNGG 2 cut(s) 412, 676
Bse1I ACTGG 3 cut(s) 251, 521, 609
Bse3DI GCAATG 2 cut(s) 289, 640
BseBI CCWGG 2 cut(s) 22, 97
BseDI CCNNGG 1 cut(s) 21
BseLI CCNNNNNNNGG 2 cut(s) 412, 676
BseMI GCAATG 2 cut(s) 289, 640
BseMII CTCAG 1 cut(s) 687
BseNI ACTGG 3 cut(s) 251, 521, 609
BseSI GKGCMC 1 cut(s) 489
BseXI GCAGC 5 cut(s) 306, 622, 644, 671, 679
BsgI GTGCAG 1 cut(s) 621
BshFI GGCC 7 cut(s) 85, 95, 224, 402, 467, 608, 685
BsiHKAI GWGCWC 1 cut(s) 489
BsiSI CCGG 2 cut(s) 225, 298
BslI CCNNNNNNNGG 2 cut(s) 412, 676
BsmAI GTCTC 1 cut(s) 295
BsnI GGCC 7 cut(s) 85, 95, 224, 402, 467, 608, 685
Bsp1286I GDGCHC 1 cut(s) 489
Bsp143I GATC 2 cut(s) 25, 339
BspACI CCGC 2 cut(s) 86, 609
BspANI GGCC 7 cut(s) 85, 95, 224, 402, 467, 608, 685
BspCNI CTCAG 1 cut(s) 688
BspLI GGNNCC 1 cut(s) 223
BspPI GGATC 1 cut(s) 33
BsrBI CCGCTC 1 cut(s) 611
BsrDI GCAATG 2 cut(s) 289, 640
BsrI ACTGG 3 cut(s) 251, 521, 609
BssECI CCNNGG 1 cut(s) 21
BssMI GATC 2 cut(s) 25, 339
Bst2UI CCWGG 2 cut(s) 22, 97
Bst4CI ACNGT 2 cut(s) 568, 671
BstC8I GCNNGC 1 cut(s) 664
BstDEI CTNAG 1 cut(s) 696
BstEII GGTNACC 1 cut(s) 130
BstHHI GCGC 1 cut(s) 647
BstKTI GATC 2 cut(s) 28, 342
BstMAI GTCTC 1 cut(s) 295
BstMBI GATC 2 cut(s) 25, 339
BstMWI GCNNNNNNNGC 1 cut(s) 644
BstNI CCWGG 2 cut(s) 22, 97
BstPI GGTNACC 1 cut(s) 130
BstSCI CCNGG 2 cut(s) 20, 95
BstSLI GKGCMC 1 cut(s) 489
BstV1I GCAGC 5 cut(s) 306, 622, 644, 671, 679
BstV2I GAAGAC 2 cut(s) 23, 466
BstX2I RGATCY 1 cut(s) 25
BstXI CCANNNNNNTGG 1 cut(s) 681
BstYI RGATCY 1 cut(s) 25
BsuRI GGCC 7 cut(s) 85, 95, 224, 402, 467, 608, 685
BtgZI GCGATG 1 cut(s) 290
BtsI GCAGTG 2 cut(s) 342, 581
BtsIMutI CAGTG 3 cut(s) 342, 528, 581
Cac8I GCNNGC 1 cut(s) 664
CaiI CAGNNNCTG 1 cut(s) 695
CfoI GCGC 1 cut(s) 647
Cfr13I GGNCC 1 cut(s) 222
Csp6I GTAC 1 cut(s) 526
CviAII CATG 2 cut(s) 61, 110
CviQI GTAC 1 cut(s) 526
DdeI CTNAG 1 cut(s) 696
DpnI GATC 2 cut(s) 27, 341
DpnII GATC 2 cut(s) 25, 339
DraIII CACNNNGTG 1 cut(s) 493
EaeI YGGCCR 4 cut(s) 83, 93, 465, 606
Eco32I GATATC 1 cut(s) 352
Eco91I GGTNACC 1 cut(s) 130
EcoO65I GGTNACC 1 cut(s) 130
EcoRI GAATTC 1 cut(s) 167
EcoRII CCWGG 2 cut(s) 20, 95
EcoRV GATATC 1 cut(s) 352
EcoT22I ATGCAT 1 cut(s) 62
FaeI CATG 2 cut(s) 64, 113
FaiI YATR 6 cut(s) 56, 58, 62, 111, 117, 285
FatI CATG 2 cut(s) 60, 109
FbaI TGATCA 1 cut(s) 339
Fnu4HI GCNGC 7 cut(s) 86, 295, 609, 633, 636, 660, 693
Fsp4HI GCNGC 7 cut(s) 86, 295, 609, 633, 636, 660, 693
FspBI CTAG 1 cut(s) 491
FspI TGCGCA 1 cut(s) 646
GlaI GCGC 1 cut(s) 646
GluI GCNGC 7 cut(s) 86, 295, 609, 633, 636, 660, 693
GsuI CTGGAG 1 cut(s) 672
HaeIII GGCC 7 cut(s) 85, 95, 224, 402, 467, 608, 685
HapII CCGG 2 cut(s) 225, 298
HhaI GCGC 1 cut(s) 647
Hin1II CATG 2 cut(s) 64, 113
Hin6I GCGC 1 cut(s) 645
HinP1I GCGC 1 cut(s) 645
HindIII AAGCTT 1 cut(s) 101
HinfI GANTC 1 cut(s) 197
HpaII CCGG 2 cut(s) 225, 298
HphI GGTGA 5 cut(s) 124, 364, 428, 434, 605
Hpy166II GTNNAC 3 cut(s) 460, 487, 526
Hpy188I TCNGA 2 cut(s) 78, 269
Hpy188III TCNNGA 3 cut(s) 164, 183, 451
Hpy8I GTNNAC 3 cut(s) 460, 487, 526
Hpy99I CGWCG 1 cut(s) 13
HpyAV CCTTC 5 cut(s) 34, 121, 222, 392, 457
HpyCH4III ACNGT 2 cut(s) 568, 671
HpyCH4V TGCA 9 cut(s) 60, 254, 294, 335, 487, 500, 632, 638, 659
HpyF10VI GCNNNNNNNGC 1 cut(s) 644
HpyF3I CTNAG 1 cut(s) 696
Hsp92II CATG 2 cut(s) 64, 113
HspAI GCGC 1 cut(s) 645
Ksp22I TGATCA 1 cut(s) 339
Kzo9I GATC 2 cut(s) 25, 339
Lsp1109I GCAGC 5 cut(s) 306, 622, 644, 671, 679
LweI GCATC 3 cut(s) 14, 263, 646
MaeI CTAG 1 cut(s) 491
MaeIII GTNAC 3 cut(s) 130, 242, 541
MalI GATC 2 cut(s) 27, 341
MbiI CCGCTC 1 cut(s) 611
MboI GATC 2 cut(s) 25, 339
MboII GAAGA 8 cut(s) 28, 133, 200, 253, 407, 466, 583, 665
MflI RGATCY 1 cut(s) 25
MhlI GDGCHC 1 cut(s) 489
MlsI TGGCCA 2 cut(s) 95, 467
MluCI AATT 3 cut(s) 167, 191, 360
MluNI TGGCCA 2 cut(s) 95, 467
MlyI GAGTC 1 cut(s) 191
MmeI TCCRAC 2 cut(s) 56, 130
MnlI CCTC 3 cut(s) 6, 148, 696
Mox20I TGGCCA 2 cut(s) 95, 467
Mph1103I ATGCAT 1 cut(s) 62
MscI TGGCCA 2 cut(s) 95, 467
MslI CAYNNNNRTG 1 cut(s) 482
Msp20I TGGCCA 2 cut(s) 95, 467
MspA1I CMGCKG 2 cut(s) 635, 692
MspI CCGG 2 cut(s) 225, 298
MspR9I CCNGG 2 cut(s) 22, 97
MvaI CCWGG 2 cut(s) 22, 97
MwoI GCNNNNNNNGC 1 cut(s) 644
NdeII GATC 2 cut(s) 25, 339
NlaIII CATG 2 cut(s) 64, 113
NlaIV GGNNCC 1 cut(s) 223
NmuCI GTSAC 1 cut(s) 130
NsbI TGCGCA 1 cut(s) 646
NsiI ATGCAT 1 cut(s) 62
PkrI GCNGC 7 cut(s) 87, 296, 610, 634, 637, 661, 694
PleI GAGTC 1 cut(s) 191
PpsI GAGTC 1 cut(s) 191
Psp6I CCWGG 2 cut(s) 20, 95
PspEI GGTNACC 1 cut(s) 130
PspGI CCWGG 2 cut(s) 20, 95
PspN4I GGNNCC 1 cut(s) 223
PspPI GGNCC 1 cut(s) 222
PstNI CAGNNNCTG 1 cut(s) 695
PsuI RGATCY 1 cut(s) 25
PvuII CAGCTG 2 cut(s) 635, 692
RsaI GTAC 1 cut(s) 527
RsaNI GTAC 1 cut(s) 526
RseI CAYNNNNRTG 1 cut(s) 482
SatI GCNGC 7 cut(s) 86, 295, 609, 633, 636, 660, 693
Sau3AI GATC 2 cut(s) 25, 339
Sau96I GGNCC 1 cut(s) 222
SchI GAGTC 1 cut(s) 191
ScrFI CCNGG 2 cut(s) 22, 97
SduI GDGCHC 1 cut(s) 489
SfaNI GCATC 3 cut(s) 14, 263, 646
SmiMI CAYNNNNRTG 1 cut(s) 482
Sse9I AATT 3 cut(s) 167, 191, 360
SsiI CCGC 2 cut(s) 86, 609
SspI AATATT 1 cut(s) 433
SspMI CTAG 1 cut(s) 491
StyD4I CCNGG 2 cut(s) 20, 95
TaaI ACNGT 2 cut(s) 568, 671
TaqI TCGA 3 cut(s) 11, 38, 171
TasI AATT 3 cut(s) 167, 191, 360
TatI WGTACW 1 cut(s) 525
TauI GCSGC 2 cut(s) 88, 611
TscAI CASTG 3 cut(s) 342, 528, 588
TseFI GTSAC 1 cut(s) 130
TseI GCWGC 5 cut(s) 294, 632, 635, 659, 692
Tsp45I GTSAC 1 cut(s) 130
TspDTI ATGAA 5 cut(s) 140, 253, 278, 408, 466
TspRI CASTG 3 cut(s) 342, 528, 588
VneI GTGCAC 1 cut(s) 485
XapI RAATTY 1 cut(s) 167
XspI CTAG 1 cut(s) 491
Zsp2I ATGCAT 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.