Rh6CG406100

Amino acid permease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0018825
Physical Location & Seq
Reverse (-)
59187984 .. 59195888
7905 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG406100.1

Sequence Viewer

Length: 474 bp
ATGGTCATCATGGTCGACGACGATGCACCAACGGCAGGCCAGAGCTTGAGGAAACTGAAGTCATCACCACCAGAAAACAAAGTGATGAAGAAGGCCACCAAAACAGGGGTGATGGTGATGACAATATTATTTACTTTGTGTGGTACCTTGGGTTATGCTGCATTTGGAGATGAAAAAGTACCAGAAAATCTCATGGCTGGTTTTCTATCTCATAAGGCCTTCTGGATAGTGGACTTGGCCAATGTCTTCATTGTGGTGCACCTAGTGGGTGCATTTCAGGTATTTGCCCAACCAGTGTACCGCTTGATTGAAGTAACGGGCTTTGTGCTTTTGGCTACTGTGATTGCCACAGCACTGCCTTTCTTCTATTGGCTACTGGCCACTCACCATCTACTTCCCGTTGCAGCTGCACATTGCGCAAAAGAAGATGCAGCGAGCAACCGTCCATTGGTTTGGCCTCCAGCTGCCGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

157

Amino Acids

17.08

Weight (kDa)

6.96

Isoelectric Point (pI)

35.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 19 - 105 2.6e-19 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018825)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g44100
rosa_chinensis RchiOBHm_Chr6g0298541
rosa_laevigata RLG00000011505
rosa_multiflora Rmu_sc0004500.1_g000006
rosa_samantha Rh6BG400200 Rh6CG406100 Rh6DG392600 Rh6DG392700
rosa_wichuraiana Rw6G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 418
Acc65I GGTACC 1 cut(s) 143
AccB1I GGYRCC 1 cut(s) 143
AccI GTMKAC 1 cut(s) 15
AciI CCGC 1 cut(s) 301
AcoI YGGCCR 2 cut(s) 237, 378
AcuI CTGAAG 1 cut(s) 77
AdeI CACNNNGTG 1 cut(s) 265
AfaI GTAC 3 cut(s) 145, 180, 299
AfiI CCNNNNNNNGG 3 cut(s) 35, 105, 448
AgsI TTSAA 1 cut(s) 311
AluBI AGCT 3 cut(s) 45, 407, 464
AluI AGCT 3 cut(s) 45, 407, 464
Alw21I GWGCWC 1 cut(s) 261
Alw44I GTGCAC 1 cut(s) 257
AoxI GGCC 6 cut(s) 37, 93, 216, 237, 378, 455
ApaLI GTGCAC 1 cut(s) 257
ApeKI GCWGC 5 cut(s) 158, 404, 407, 431, 464
Asp718I GGTACC 1 cut(s) 143
AspLEI GCGC 1 cut(s) 419
AsuHPI GGTGA 4 cut(s) 57, 121, 127, 377
BaeGI GKGCMC 1 cut(s) 261
BaeI ACNNNNGTAYC 2 cut(s) 281, 314
BalI TGGCCA 2 cut(s) 239, 380
BanI GGYRCC 1 cut(s) 143
BbsI GAAGAC 1 cut(s) 238
Bbv12I GWGCWC 1 cut(s) 261
BbvI GCAGC 5 cut(s) 145, 394, 416, 443, 451
BccI CCATC 2 cut(s) 106, 396
BceAI ACGGC 1 cut(s) 48
BcgI CGANNNNNNTGC 2 cut(s) 5, 39
BfaI CTAG 1 cut(s) 263
BisI GCNGC 5 cut(s) 159, 405, 408, 432, 465
BlsI GCNGC 5 cut(s) 160, 406, 409, 433, 466
BmiI GGNNCC 1 cut(s) 145
BmsI GCATC 2 cut(s) 13, 418
BpiI GAAGAC 1 cut(s) 238
BpmI CTGGAG 1 cut(s) 444
BpuEI CTTGAG 1 cut(s) 67
BsaJI CCNNGG 1 cut(s) 147
Bsc4I CCNNNNNNNGG 3 cut(s) 35, 105, 448
Bse1I ACTGG 2 cut(s) 293, 381
Bse3DI GCAATG 1 cut(s) 412
BseDI CCNNGG 1 cut(s) 147
BseLI CCNNNNNNNGG 3 cut(s) 35, 105, 448
BseMI GCAATG 1 cut(s) 412
BseNI ACTGG 2 cut(s) 293, 381
BseSI GKGCMC 1 cut(s) 261
BseXI GCAGC 5 cut(s) 145, 394, 416, 443, 451
BsgI GTGCAG 1 cut(s) 393
BshFI GGCC 6 cut(s) 39, 95, 218, 239, 380, 457
BshNI GGYRCC 1 cut(s) 143
BsiHKAI GWGCWC 1 cut(s) 261
BslI CCNNNNNNNGG 3 cut(s) 35, 105, 448
BsnI GGCC 6 cut(s) 39, 95, 218, 239, 380, 457
Bsp1286I GDGCHC 1 cut(s) 261
BspACI CCGC 1 cut(s) 301
BspANI GGCC 6 cut(s) 39, 95, 218, 239, 380, 457
BspLI GGNNCC 1 cut(s) 145
BspT107I GGYRCC 1 cut(s) 143
BsrDI GCAATG 1 cut(s) 412
BsrI ACTGG 2 cut(s) 293, 381
BssECI CCNNGG 1 cut(s) 147
BssT1I CCWWGG 1 cut(s) 147
Bst4CI ACNGT 2 cut(s) 340, 443
BstC8I GCNNGC 2 cut(s) 37, 436
BstHHI GCGC 1 cut(s) 419
BstMWI GCNNNNNNNGC 2 cut(s) 32, 416
BstSLI GKGCMC 1 cut(s) 261
BstV1I GCAGC 5 cut(s) 145, 394, 416, 443, 451
BstV2I GAAGAC 1 cut(s) 238
BstXI CCANNNNNNTGG 1 cut(s) 453
BsuRI GGCC 6 cut(s) 39, 95, 218, 239, 380, 457
BtsI GCAGTG 1 cut(s) 353
BtsIMutI CAGTG 2 cut(s) 300, 353
Cac8I GCNNGC 2 cut(s) 37, 436
CfoI GCGC 1 cut(s) 419
Csp6I GTAC 3 cut(s) 144, 179, 298
CviAII CATG 2 cut(s) 10, 193
CviQI GTAC 3 cut(s) 144, 179, 298
DraIII CACNNNGTG 1 cut(s) 265
EaeI YGGCCR 2 cut(s) 237, 378
Eco130I CCWWGG 1 cut(s) 147
Eco147I AGGCCT 1 cut(s) 218
Eco57I CTGAAG 1 cut(s) 77
EcoT14I CCWWGG 1 cut(s) 147
ErhI CCWWGG 1 cut(s) 147
FaeI CATG 2 cut(s) 13, 196
FaiI YATR 4 cut(s) 11, 156, 194, 213
FatI CATG 2 cut(s) 9, 192
FblI GTMKAC 1 cut(s) 15
Fnu4HI GCNGC 5 cut(s) 159, 405, 408, 432, 465
Fsp4HI GCNGC 5 cut(s) 159, 405, 408, 432, 465
FspBI CTAG 1 cut(s) 263
FspI TGCGCA 1 cut(s) 418
GlaI GCGC 1 cut(s) 418
GluI GCNGC 5 cut(s) 159, 405, 408, 432, 465
GsuI CTGGAG 1 cut(s) 444
HaeIII GGCC 6 cut(s) 39, 95, 218, 239, 380, 457
HhaI GCGC 1 cut(s) 419
Hin1II CATG 2 cut(s) 13, 196
Hin6I GCGC 1 cut(s) 417
HinP1I GCGC 1 cut(s) 417
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HphI GGTGA 4 cut(s) 57, 121, 127, 377
Hpy166II GTNNAC 4 cut(s) 16, 232, 259, 298
Hpy188III TCNNGA 1 cut(s) 223
Hpy8I GTNNAC 4 cut(s) 16, 232, 259, 298
Hpy99I CGWCG 2 cut(s) 20, 23
HpyAV CCTTC 2 cut(s) 85, 229
HpyCH4III ACNGT 2 cut(s) 340, 443
HpyCH4V TGCA 7 cut(s) 26, 161, 259, 272, 404, 410, 431
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 416
Hsp92II CATG 2 cut(s) 13, 196
HspAI GCGC 1 cut(s) 417
KpnI GGTACC 1 cut(s) 147
Lsp1109I GCAGC 5 cut(s) 145, 394, 416, 443, 451
LweI GCATC 2 cut(s) 13, 418
MaeI CTAG 1 cut(s) 263
MaeIII GTNAC 1 cut(s) 313
MboII GAAGA 4 cut(s) 100, 238, 355, 437
MhlI GDGCHC 1 cut(s) 261
MlsI TGGCCA 2 cut(s) 239, 380
MluNI TGGCCA 2 cut(s) 239, 380
MnlI CCTC 2 cut(s) 42, 468
Mox20I TGGCCA 2 cut(s) 239, 380
MscI TGGCCA 2 cut(s) 239, 380
MslI CAYNNNNRTG 1 cut(s) 254
Msp20I TGGCCA 2 cut(s) 239, 380
MspA1I CMGCKG 2 cut(s) 407, 464
MwoI GCNNNNNNNGC 2 cut(s) 32, 416
NlaIII CATG 2 cut(s) 13, 196
NlaIV GGNNCC 1 cut(s) 145
NsbI TGCGCA 1 cut(s) 418
PceI AGGCCT 1 cut(s) 218
PkrI GCNGC 5 cut(s) 160, 406, 409, 433, 466
PspN4I GGNNCC 1 cut(s) 145
PvuII CAGCTG 2 cut(s) 407, 464
RsaI GTAC 3 cut(s) 145, 180, 299
RsaNI GTAC 3 cut(s) 144, 179, 298
RseI CAYNNNNRTG 1 cut(s) 254
SalI GTCGAC 1 cut(s) 14
SatI GCNGC 5 cut(s) 159, 405, 408, 432, 465
SduI GDGCHC 1 cut(s) 261
SetI ASST 6 cut(s) 47, 149, 264, 282, 409, 466
SfaNI GCATC 2 cut(s) 13, 418
SmiMI CAYNNNNRTG 1 cut(s) 254
SmlI CTYRAG 1 cut(s) 46
SmoI CTYRAG 1 cut(s) 46
SseBI AGGCCT 1 cut(s) 218
SsiI CCGC 1 cut(s) 301
SspI AATATT 1 cut(s) 126
SspMI CTAG 1 cut(s) 263
StuI AGGCCT 1 cut(s) 218
StyI CCWWGG 1 cut(s) 147
TaaI ACNGT 2 cut(s) 340, 443
TaqI TCGA 1 cut(s) 15
TscAI CASTG 2 cut(s) 300, 360
TseI GCWGC 5 cut(s) 158, 404, 407, 431, 464
TspDTI ATGAA 3 cut(s) 101, 186, 238
TspRI CASTG 2 cut(s) 300, 360
VneI GTGCAC 1 cut(s) 257
XmiI GTMKAC 1 cut(s) 15
XspI CTAG 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.