Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012623

Physical Location & Seq

Genomic Coordinates Reverse (-)

903484 .. 906344

Gene Structure 2861 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ15873

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2499 bp

ATGGCAATGGCAATGGCAAAGGCAAAGGCAAAGGCAGCGCGGAATGACGCAAACAGAAGCCTTGAGAGTTTATTGGACATGGACAAAATAGTGGCTGCAAAGATTTCTGTTCCACTTCAGTTGTCGAAGATGATTCCGGGCCAAGGCCTTGAATTCAACAACCTTTCCTACAGTGTAATTAAGAAGATAAAGAAAGATGGGGTTTGGATCAAGAAGGAAGCTTATCTTCTTAATGACATATCTGGTCAGGCCGTGAAAGGTGAGGTTATGGCCATTTTGGGACCTAGTGGTGCTGGAAAATCCACATTTCTCGATGCCTTGGCAGGAAGGATTGCTCAAGGAAGTCTTGAAGGCTCTGTAAGAGTCGATGGAAAAACGGTTACTACAAGCTACATGAAGATGGTTTCCTCTTACGTGATGCAAGATGACCAACTGTTCCCGATGTTAACTGTGTTTGAGACTTTCATGTTTGCAGCTGAGGTTAGGCTTCCTCCTTCTCTTTCCAAGCATGAGAAGAGAAAGAGAGTCTATGAGCTCATTGACCAGCTCGGCTTGCAAACTGCAACACATACATATATTGGTGATGAGGGGAGGAGAGGAGTCTCGGGAGGAGAAAGACGGAGGGTCTCAATTGGAATTGACATCATCCACAAACCTTCTTTGCTGTTTCTTGATGAACCAACTTCTGGTCTTGACTCTACGAGTGCTTATAGTGTTGTGGAAAAGGTGAAGGAAATAGCTCGAGGTGGTAGCATTGTGCTCATGACCATCCATCAACCTTCGTATCGTATTCAAAATCTCTTGGACCGCATGACAATCCTAGCAAGAGGAAAGCTGATATATTTGGGAAGTCCACATGGTCTGTCTGCCCACCTTTCTGGATTTGGAAGGCCAGTTCCTGATAGAGAAAACAACCTCGAGTATCTCTTGGATGTGATCAAAGAATATGATGAGTCTAATGTGGGACTAGAACCACTTGTTGTCTACCTCCGTGATGGAATCAAACCCGATCAGGTGTCAAGTACCCCTACTCCAAAAAGACTAAAGACACCACGAAGTTCTTATAAAAACACCCCTTCGTCCAAGCACATCAGCCTCAGGAGCAAACAATTTTCCCGTAGAAACTCGACACCTGGACCAGATTCTCGCCCATCTGATGATTATGATGATGAGGAGGACGATGAGTTTGAGGAGGATGATGAGTTTGACAACTCCCTGGAAAGGAAATCAATTCATACACCAATGCAGCACTTTGCAAGTGGTATCTATAACCCTCGTCTAGCTTCACATTTCTACAAAGACTTCTCAGTGTGGATATACCATGGTGTCAAAGGAACTCCTCGCCGCCCACCATCATGGACTCCTGCTAGAACTCCGGGAAGGACCCCCGGAAAGACACCAGTAATCTCAGTGTCAGGTATAAGAAGTGCTGTTTCAAGCCAATATGCAACACCTCGGCACTACCCTCCTATGCCTAGTAGTACTAAAGCCCCTGTTGTCTACAGCCCTTCCAATTATGACTCTTCATATGGACCATCATTTGAAGAGTTCGAGATGGAAGAAGATGAGCTTGATGAGATAGAGCTTGGGCCTAAGTTTGCAAACCCGTGGCTTCGTGAGGTTGCAGTCCTCTCATGGCGTACAACACTCAATGTGGTTCGTACCCCTGAACTCTTCCTCTCACGAGAGATTGTGTTGGCTGTCATGGCACTCGTTCTATCTTCCCTTTTCAGTAACCTACATGCAGAGTCCTTCAAAAATGTAAACAGGCTTCTAAACTTCTACATCTTTGCTGTTTGCCTGATCTTCTTTTCCTCCAATGATGCTGTCCCGACTTTCATCCAAGAAAGGTTCATTTTCATCAGGGAAACTTCTCATAATGCTTACCGTGCTTCTTCCTACGTCATCTCTTCCCTCATTGTTTACCTCCCGTTTTTCGCCATTCAAGCTCTCACATTTGCTGCCATAACCAAACTCATGCTTAAGCTCAGAAGCAGTCTTTTCTATTTTTGGATAATCTTGTATGCCTCACTTATAACCACCAATGCTTATGTCATGCTTGTGAGTGCCCTGGTTCCTAGTTACATCACTGGATATGCTGTTGTGATAGCCACCACAGCTCTCTTCTTTCTCACTTGCGGCTTTTTCTTGAAACGTACTCAGATCCCAAATTACTGGGTTTGGGTGCACTACATCTCCGCAATTAAGTACCCATTTGAGGCAATGCTAACAAATGAATTCCAAGGAATACGTTGCTACTCTGGCAATCTAGCCGATCTTTCACCTGGGCCTTTAGGAAATGTGAAGTTGAGTAAAGTGCACAAAGACACAGAATCGCTAAGAGGTTGCCTGCTGATCGGACAAGATGTTATAGAGTCGATGGATATCAATCACGATAACATCTGGTATGATGTTGGAATCTTGCTAGCTTGGGGTGTTCTATACCGGCTCCTCTTCTACATGGTCCTCAGATTCTATTCCAAGAATGAGAGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005775 GO:0005886 GO:0006810 GO:0007034 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009987 GO:0010208 GO:0010927 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016021 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0022804 GO:0022857 GO:0030198 GO:0031224 GO:0031974 GO:0032501 GO:0032502 GO:0032989 GO:0042221 GO:0042493 GO:0042623 GO:0042626 GO:0042891 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043492 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0070013 GO:0071840 GO:0071944 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

832

Amino Acids

93.65

Weight (kDa)

8.83

Isoelectric Point (pI)

43.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	77 - 229	1.1e-28	ABC transporter
ABC2_membrane_7	PF19055	258 - 314	5.4e-06	ABC-2 type transporter
ABC2_membrane	PF01061	540 - 747	1.5e-38	ABC-2 type transporter
ABC2_membrane_3	PF12698	582 - 819	1.2e-06	ABC-2 family transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0012623)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g17530
malus_domestica	MD06G1228700.v1.1 MD14G1237900.v1.1
prunus_persica	Prupe.5G235100_v2.0.a1
pyrus_communis	pycom06g20500 pycom14g19900
rosa_chinensis	RchiOBHm_Chr3g0493261 RchiOBHm_Chr7g0178121
rosa_laevigata	RLG00000005469
rosa_multiflora	Rmu_sc0000425.1_g000011 Rmu_sc0005324.1_g000001
rosa_roxburghii	Rroxscaffold_6G00391680
rosa_rugosa	Rorug03G0260000 Rorug06G0413700
rosa_samantha	Rh3DG344200 Rh7CG012900 Rh7DG013200
rosa_wichuraiana	Rw3G027160 Rw7G001030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1065, 2036
AccB7I	CCANNNNNTGG	1 cut(s)	686
AccI	GTMKAC	2 cut(s)	984, 1500
AccII	CGCG	1 cut(s)	40
AciI	CCGC	5 cut(s)	40, 808, 1345, 2139, 2199
AclWI	GGATC	2 cut(s)	215, 2158
AcoI	YGGCCR	1 cut(s)	270
AcsI	RAATTY	2 cut(s)	152, 2237
AcuI	CTGAAG	1 cut(s)	101
AfaI	GTAC	6 cut(s)	1024, 1483, 1642, 1663, 2158, 2210
AfiI	CCNNNNNNNGG	4 cut(s)	143, 686, 1221, 2218
AflII	CTTAAG	1 cut(s)	1982
AgsI	TTSAA	9 cut(s)	152, 157, 350, 794, 1437, 1544, 1756, 1946, 2152
AhdI	GACNNNNNGTC	1 cut(s)	623
AjnI	CCWGG	4 cut(s)	1132, 1215, 2070, 2284
AloI	GAACNNNNNNTCC	2 cut(s)	879, 911
Alw21I	GWGCWC	4 cut(s)	537, 762, 2190, 2322
Alw26I	GTCTC	3 cut(s)	452, 607, 631
Alw44I	GTGCAC	2 cut(s)	2186, 2318
AlwI	GGATC	2 cut(s)	215, 2158
AlwNI	CAGNNNCTG	1 cut(s)	899
Ama87I	CYCGRG	3 cut(s)	604, 741, 917
AoxI	GGCC	7 cut(s)	139, 145, 249, 270, 890, 1589, 2288
ApaLI	GTGCAC	2 cut(s)	2186, 2318
ApeKI	GCWGC	5 cut(s)	35, 95, 473, 1246, 1961
ApoI	RAATTY	2 cut(s)	152, 2237
ArsI	GACNNNNNNTTYG	2 cut(s)	1169, 1201
AspLEI	GCGC	1 cut(s)	40
AspS9I	GGNCC	9 cut(s)	139, 281, 805, 1136, 1383, 1532, 1589, 2288, 2464
AsuC2I	CCSGG	3 cut(s)	138, 1377, 1389
AsuHPI	GGTGA	4 cut(s)	272, 593, 739, 2274
AsuNHI	GCTAGC	1 cut(s)	2425
AvaI	CYCGRG	3 cut(s)	604, 741, 917
AvaII	GGWCC	6 cut(s)	281, 805, 1136, 1383, 1532, 2464
AxyI	CCTNAGG	1 cut(s)	1097
BaeGI	GKGCMC	3 cut(s)	2071, 2190, 2322
BaeI	ACNNNNGTAYC	2 cut(s)	767, 800
BalI	TGGCCA	1 cut(s)	272
BanII	GRGCYC	1 cut(s)	537
BarI	GAAGNNNNNNTAC	2 cut(s)	1755, 1787
BauI	CACGAG	1 cut(s)	1683
Bbv12I	GWGCWC	4 cut(s)	537, 762, 2190, 2322
BbvCI	CCTCAGC	1 cut(s)	477
BbvI	GCAGC	5 cut(s)	47, 82, 485, 1258, 1948
BceAI	ACGGC	1 cut(s)	236
BciT130I	CCWGG	4 cut(s)	1134, 1217, 2072, 2286
BclI	TGATCA	1 cut(s)	936
BcnI	CCSGG	3 cut(s)	138, 1377, 1389
BcoDI	GTCTC	3 cut(s)	452, 607, 631
BfaI	CTAG	9 cut(s)	285, 821, 968, 1280, 1368, 1476, 2079, 2270, 2426
BfmI	CTRYAG	2 cut(s)	169, 1501
BfrI	CTTAAG	1 cut(s)	1982
BisI	GCNGC	7 cut(s)	36, 96, 474, 1247, 1345, 1962, 2140
BlsI	GCNGC	7 cut(s)	37, 97, 475, 1248, 1346, 1963, 2141
BmcAI	AGTACT	1 cut(s)	1483
Bme1390I	CCNGG	7 cut(s)	138, 1134, 1217, 1377, 1389, 2072, 2286
Bme18I	GGWCC	6 cut(s)	281, 805, 1136, 1383, 1532, 2464
BmeRI	GACNNNNNGTC	1 cut(s)	623
BmeT110I	CYCGRG	3 cut(s)	604, 741, 917
BmgT120I	GGNCC	9 cut(s)	139, 281, 805, 1136, 1383, 1532, 1589, 2288, 2464
BmiI	GGNNCC	4 cut(s)	282, 1385, 2076, 2450
BmrFI	CCNGG	7 cut(s)	138, 1134, 1217, 1377, 1389, 2072, 2286
BmrI	ACTGGG	1 cut(s)	2185
BmsI	GCATC	3 cut(s)	304, 408, 1813
BmtI	GCTAGC	1 cut(s)	2429
BmuI	ACTGGG	1 cut(s)	2185
Bpu10I	CCTNAGC	1 cut(s)	477
BpuEI	CTTGAG	2 cut(s)	83, 321
BpuMI	CCSGG	3 cut(s)	138, 1377, 1389
BsaAI	YACGTR	1 cut(s)	415
BsaBI	GATNNNNATC	2 cut(s)	2384, 2388
BsaI	GGTCTC	1 cut(s)	631
BsaXI	ACNNNNNCTCC	4 cut(s)	1015, 1045, 2180, 2210
Bsc4I	CCNNNNNNNGG	4 cut(s)	143, 686, 1221, 2218
Bse118I	RCCGGY	1 cut(s)	2445
Bse1I	ACTGG	4 cut(s)	893, 1400, 2095, 2180
Bse21I	CCTNAGG	1 cut(s)	1097
Bse3DI	GCAATG	3 cut(s)	12, 18, 2229
Bse8I	GATNNNNATC	2 cut(s)	2384, 2388
BseBI	CCWGG	4 cut(s)	1134, 1217, 2072, 2286
BseGI	GGATG	5 cut(s)	645, 768, 937, 1201, 1839
BseJI	GATNNNNATC	2 cut(s)	2384, 2388
BseLI	CCNNNNNNNGG	4 cut(s)	143, 686, 1221, 2218
BseMI	GCAATG	3 cut(s)	12, 18, 2229
BseMII	CTCAG	7 cut(s)	468, 1111, 1320, 1422, 2002, 2174, 2482
BseNI	ACTGG	4 cut(s)	893, 1400, 2095, 2180
BseRI	GAGGAG	7 cut(s)	607, 612, 624, 1187, 1205, 1329, 2441
BseSI	GKGCMC	3 cut(s)	2071, 2190, 2322
BseXI	GCAGC	5 cut(s)	47, 82, 485, 1258, 1948
Bsh1236I	CGCG	1 cut(s)	40
BshFI	GGCC	7 cut(s)	141, 147, 251, 272, 892, 1591, 2290
BsiHKAI	GWGCWC	4 cut(s)	537, 762, 2190, 2322
BsiHKCI	CYCGRG	3 cut(s)	604, 741, 917
BsiSI	CCGG	4 cut(s)	137, 1376, 1389, 2446
BslFI	GGGAC	3 cut(s)	294, 978, 1814
BslI	CCNNNNNNNGG	4 cut(s)	143, 686, 1221, 2218
BsmAI	GTCTC	3 cut(s)	452, 607, 631
BsmFI	GGGAC	3 cut(s)	294, 978, 1814
BsnI	GGCC	7 cut(s)	141, 147, 251, 272, 892, 1591, 2290
Bso31I	GGTCTC	1 cut(s)	631
BsoBI	CYCGRG	3 cut(s)	604, 741, 917
Bsp1286I	GDGCHC	5 cut(s)	537, 762, 2071, 2190, 2322
Bsp143I	GATC	7 cut(s)	207, 936, 1009, 1803, 2163, 2275, 2355
Bsp19I	CCATGG	1 cut(s)	1321
BspACI	CCGC	5 cut(s)	40, 808, 1345, 2139, 2199
BspANI	GGCC	7 cut(s)	141, 147, 251, 272, 892, 1591, 2290
BspCNI	CTCAG	7 cut(s)	469, 1110, 1319, 1421, 2001, 2173, 2481
BspFNI	CGCG	1 cut(s)	40
BspHI	TCATGA	1 cut(s)	762
BspLI	GGNNCC	4 cut(s)	282, 1385, 2076, 2450
BspOI	GCTAGC	1 cut(s)	2429
BspPI	GGATC	2 cut(s)	215, 2158
BspTI	CTTAAG	1 cut(s)	1982
BspTNI	GGTCTC	1 cut(s)	631
BsrDI	GCAATG	3 cut(s)	12, 18, 2229
BsrFI	RCCGGY	1 cut(s)	2445
BsrI	ACTGG	4 cut(s)	893, 1400, 2095, 2180
BssAI	RCCGGY	1 cut(s)	2445
BssMI	GATC	7 cut(s)	207, 936, 1009, 1803, 2163, 2275, 2355
BssSI	CACGAG	1 cut(s)	1683
BssT1I	CCWWGG	4 cut(s)	142, 318, 1321, 2242
Bst2BI	CACGAG	1 cut(s)	1683
Bst2UI	CCWGG	4 cut(s)	1134, 1217, 2072, 2286
Bst4CI	ACNGT	5 cut(s)	173, 379, 435, 451, 1889
Bst6I	CTCTTC	7 cut(s)	509, 1528, 1539, 1679, 1915, 2129, 2459
BstAFI	CTTAAG	1 cut(s)	1982
BstBAI	YACGTR	1 cut(s)	415
BstC8I	GCNNGC	3 cut(s)	554, 2351, 2427
BstDEI	CTNAG	9 cut(s)	477, 1097, 1306, 1408, 1593, 1988, 2160, 2339, 2468
BstDSI	CCRYGG	2 cut(s)	1321, 1607
BstF5I	GGATG	5 cut(s)	645, 768, 937, 1201, 1839
BstFNI	CGCG	1 cut(s)	40
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	7 cut(s)	210, 939, 1012, 1806, 2166, 2278, 2358
BstMAI	GTCTC	3 cut(s)	452, 607, 631
BstMBI	GATC	7 cut(s)	207, 936, 1009, 1803, 2163, 2275, 2355
BstMWI	GCNNNNNNNGC	8 cut(s)	35, 553, 1101, 1706, 1889, 1946, 2117, 2262
BstNI	CCWGG	4 cut(s)	1134, 1217, 2072, 2286
BstNSI	RCATGY	1 cut(s)	1745
BstSCI	CCNGG	7 cut(s)	136, 1132, 1215, 1375, 1387, 2070, 2284
BstSFI	CTRYAG	2 cut(s)	169, 1501
BstSLI	GKGCMC	3 cut(s)	2071, 2190, 2322
BstUI	CGCG	1 cut(s)	40
BstV1I	GCAGC	5 cut(s)	47, 82, 485, 1258, 1948
BstX2I	RGATCY	1 cut(s)	2163
BstXI	CCANNNNNNTGG	3 cut(s)	878, 1356, 2175
BstYI	RGATCY	1 cut(s)	2163
Bsu36I	CCTNAGG	1 cut(s)	1097
BsuRI	GGCC	7 cut(s)	141, 147, 251, 272, 892, 1591, 2290
BtgI	CCRYGG	2 cut(s)	1321, 1607
BtsCI	GGATG	5 cut(s)	645, 768, 937, 1201, 1839
BtsIMutI	CAGTG	4 cut(s)	178, 1314, 1416, 2088
Cac8I	GCNNGC	3 cut(s)	554, 2351, 2427
CaiI	CAGNNNCTG	1 cut(s)	899
CciI	TCATGA	1 cut(s)	762
CfoI	GCGC	1 cut(s)	40
Cfr10I	RCCGGY	1 cut(s)	2445
Cfr13I	GGNCC	9 cut(s)	139, 281, 805, 1136, 1383, 1532, 1589, 2288, 2464
CseI	GACGC	1 cut(s)	56
Csp6I	GTAC	6 cut(s)	1023, 1482, 1641, 1662, 2157, 2209
CspCI	CAANNNNNGTGG	2 cut(s)	102, 137
CviQI	GTAC	6 cut(s)	1023, 1482, 1641, 1662, 2157, 2209
DdeI	CTNAG	9 cut(s)	477, 1097, 1306, 1408, 1593, 1988, 2160, 2339, 2468
DpnI	GATC	7 cut(s)	209, 938, 1011, 1805, 2165, 2277, 2357
DpnII	GATC	7 cut(s)	207, 936, 1009, 1803, 2163, 2275, 2355
DriI	GACNNNNNGTC	1 cut(s)	623
EaeI	YGGCCR	1 cut(s)	270
Eam1104I	CTCTTC	7 cut(s)	509, 1528, 1539, 1679, 1915, 2129, 2459
Eam1105I	GACNNNNNGTC	1 cut(s)	623
EarI	CTCTTC	7 cut(s)	509, 1528, 1539, 1679, 1915, 2129, 2459
Ecl136II	GAGCTC	1 cut(s)	535
Eco130I	CCWWGG	4 cut(s)	142, 318, 1321, 2242
Eco147I	AGGCCT	1 cut(s)	147
Eco24I	GRGCYC	1 cut(s)	537
Eco31I	GGTCTC	1 cut(s)	631
Eco32I	GATATC	1 cut(s)	2386
Eco47I	GGWCC	6 cut(s)	281, 805, 1136, 1383, 1532, 2464
Eco53kI	GAGCTC	1 cut(s)	535
Eco57I	CTGAAG	1 cut(s)	101
Eco81I	CCTNAGG	1 cut(s)	1097
Eco88I	CYCGRG	3 cut(s)	604, 741, 917
EcoICRI	GAGCTC	1 cut(s)	535
EcoO109I	RGGNCCY	2 cut(s)	281, 1383
EcoRI	GAATTC	2 cut(s)	152, 2237
EcoRII	CCWGG	4 cut(s)	1132, 1215, 2070, 2284
EcoRV	GATATC	1 cut(s)	2386
EcoT14I	CCWWGG	4 cut(s)	142, 318, 1321, 2242
EcoT38I	GRGCYC	1 cut(s)	537
ErhI	CCWWGG	4 cut(s)	142, 318, 1321, 2242
FalI	AAGNNNNNCTT	6 cut(s)	210, 242, 330, 362, 1554, 1586
FaqI	GGGAC	3 cut(s)	294, 978, 1814
FauNDI	CATATG	1 cut(s)	1528
FbaI	TGATCA	1 cut(s)	936
FblI	GTMKAC	2 cut(s)	984, 1500
Fnu4HI	GCNGC	7 cut(s)	36, 96, 474, 1247, 1345, 1962, 2140
FokI	GGATG	5 cut(s)	632, 755, 944, 1208, 1826
FriOI	GRGCYC	1 cut(s)	537
Fsp4HI	GCNGC	7 cut(s)	36, 96, 474, 1247, 1345, 1962, 2140
FspBI	CTAG	9 cut(s)	285, 821, 968, 1280, 1368, 1476, 2079, 2270, 2426
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	7 cut(s)	36, 96, 474, 1247, 1345, 1962, 2140
HaeIII	GGCC	7 cut(s)	141, 147, 251, 272, 892, 1591, 2290
HapII	CCGG	4 cut(s)	137, 1376, 1389, 2446
HgaI	GACGC	1 cut(s)	56
HhaI	GCGC	1 cut(s)	40
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HincII	GTYRAC	1 cut(s)	447
HindII	GTYRAC	1 cut(s)	447
HindIII	AAGCTT	1 cut(s)	219
HpaI	GTTAAC	1 cut(s)	447
HpaII	CCGG	4 cut(s)	137, 1376, 1389, 2446
HphI	GGTGA	4 cut(s)	272, 593, 739, 2274
Hpy166II	GTNNAC	8 cut(s)	447, 854, 985, 1501, 1765, 1924, 2188, 2320
Hpy188I	TCNGA	5 cut(s)	1156, 1991, 2163, 2360, 2471
Hpy8I	GTNNAC	8 cut(s)	447, 854, 985, 1501, 1765, 1924, 2188, 2320
HpyCH4III	ACNGT	5 cut(s)	173, 379, 435, 451, 1889
HpyCH4IV	ACGT	4 cut(s)	414, 1902, 2155, 2251
HpyF10VI	GCNNNNNNNGC	8 cut(s)	35, 553, 1101, 1706, 1889, 1946, 2117, 2262
HpyF3I	CTNAG	9 cut(s)	477, 1097, 1306, 1408, 1593, 1988, 2160, 2339, 2468
HpySE526I	ACGT	4 cut(s)	414, 1902, 2155, 2251
HspAI	GCGC	1 cut(s)	38
Ksp22I	TGATCA	1 cut(s)	936
KspAI	GTTAAC	1 cut(s)	447
Kzo9I	GATC	7 cut(s)	207, 936, 1009, 1803, 2163, 2275, 2355
LmnI	GCTCC	2 cut(s)	1101, 2454
Lsp1109I	GCAGC	5 cut(s)	47, 82, 485, 1258, 1948
LweI	GCATC	3 cut(s)	304, 408, 1813
MaeI	CTAG	9 cut(s)	285, 821, 968, 1280, 1368, 1476, 2079, 2270, 2426
MaeII	ACGT	4 cut(s)	414, 1902, 2155, 2251
MaeIII	GTNAC	3 cut(s)	379, 1733, 2081
MalI	GATC	7 cut(s)	209, 938, 1011, 1805, 2165, 2277, 2357
MboI	GATC	7 cut(s)	207, 936, 1009, 1803, 2163, 2275, 2355
MfeI	CAATTG	1 cut(s)	630
MflI	RGATCY	1 cut(s)	2163
MhlI	GDGCHC	5 cut(s)	537, 762, 2071, 2190, 2322
MlsI	TGGCCA	1 cut(s)	272
MluNI	TGGCCA	1 cut(s)	272
MlyI	GAGTC	9 cut(s)	372, 534, 609, 689, 962, 1354, 1514, 1757, 2384
MmeI	TCCRAC	1 cut(s)	2395
Mox20I	TGGCCA	1 cut(s)	272
MscI	TGGCCA	1 cut(s)	272
MseI	TTAA	5 cut(s)	180, 231, 446, 1983, 2205
MslI	CAYNNNNRTG	3 cut(s)	398, 1354, 2060
Msp20I	TGGCCA	1 cut(s)	272
MspA1I	CMGCKG	1 cut(s)	476
MspCI	CTTAAG	1 cut(s)	1982
MspI	CCGG	4 cut(s)	137, 1376, 1389, 2446
MspR9I	CCNGG	7 cut(s)	138, 1134, 1217, 1377, 1389, 2072, 2286
MunI	CAATTG	1 cut(s)	630
MvaI	CCWGG	4 cut(s)	1134, 1217, 2072, 2286
MvnI	CGCG	1 cut(s)	40
MwoI	GCNNNNNNNGC	8 cut(s)	35, 553, 1101, 1706, 1889, 1946, 2117, 2262
NciI	CCSGG	3 cut(s)	138, 1377, 1389
NcoI	CCATGG	1 cut(s)	1321
NdeI	CATATG	1 cut(s)	1528
NdeII	GATC	7 cut(s)	207, 936, 1009, 1803, 2163, 2275, 2355
NheI	GCTAGC	1 cut(s)	2425
NlaIV	GGNNCC	4 cut(s)	282, 1385, 2076, 2450
NmeAIII	GCCGAG	2 cut(s)	528, 1435
NspI	RCATGY	1 cut(s)	1745
PaeR7I	CTCGAG	2 cut(s)	741, 917
PagI	TCATGA	1 cut(s)	762
PceI	AGGCCT	1 cut(s)	147
PfeI	GAWTC	6 cut(s)	133, 999, 1142, 2333, 2418, 2472
PflMI	CCANNNNNTGG	1 cut(s)	686
PfoI	TCCNGGA	1 cut(s)	1375
PkrI	GCNGC	7 cut(s)	37, 97, 475, 1248, 1346, 1963, 2141
PleI	GAGTC	9 cut(s)	371, 533, 608, 689, 961, 1354, 1514, 1756, 2383
PpsI	GAGTC	9 cut(s)	371, 533, 608, 689, 961, 1354, 1514, 1756, 2383
Ppu21I	YACGTR	1 cut(s)	415
PpuMI	RGGWCCY	2 cut(s)	281, 1383
PsiI	TTATAA	2 cut(s)	1065, 2036
Psp124BI	GAGCTC	1 cut(s)	537
Psp5II	RGGWCCY	2 cut(s)	281, 1383
Psp6I	CCWGG	4 cut(s)	1132, 1215, 2070, 2284
PspGI	CCWGG	4 cut(s)	1132, 1215, 2070, 2284
PspN4I	GGNNCC	4 cut(s)	282, 1385, 2076, 2450
PspPI	GGNCC	9 cut(s)	139, 281, 805, 1136, 1383, 1532, 1589, 2288, 2464
PspPPI	RGGWCCY	2 cut(s)	281, 1383
PspXI	VCTCGAGB	2 cut(s)	741, 917
PstNI	CAGNNNCTG	1 cut(s)	899
PsuI	RGATCY	1 cut(s)	2163
PvuII	CAGCTG	1 cut(s)	476
RsaI	GTAC	6 cut(s)	1024, 1483, 1642, 1663, 2158, 2210
RsaNI	GTAC	6 cut(s)	1023, 1482, 1641, 1662, 2157, 2209
RseI	CAYNNNNRTG	3 cut(s)	398, 1354, 2060
SacI	GAGCTC	1 cut(s)	537
SaqAI	TTAA	5 cut(s)	180, 231, 446, 1983, 2205
SatI	GCNGC	7 cut(s)	36, 96, 474, 1247, 1345, 1962, 2140
Sau3AI	GATC	7 cut(s)	207, 936, 1009, 1803, 2163, 2275, 2355
Sau96I	GGNCC	9 cut(s)	139, 281, 805, 1136, 1383, 1532, 1589, 2288, 2464
ScaI	AGTACT	1 cut(s)	1483
SchI	GAGTC	9 cut(s)	372, 534, 609, 689, 962, 1354, 1514, 1757, 2384
ScrFI	CCNGG	7 cut(s)	138, 1134, 1217, 1377, 1389, 2072, 2286
SduI	GDGCHC	5 cut(s)	537, 762, 2071, 2190, 2322
SfaNI	GCATC	3 cut(s)	304, 408, 1813
SfcI	CTRYAG	2 cut(s)	169, 1501
Sfr274I	CTCGAG	2 cut(s)	741, 917
SinI	GGWCC	6 cut(s)	281, 805, 1136, 1383, 1532, 2464
SlaI	CTCGAG	2 cut(s)	741, 917
SmiMI	CAYNNNNRTG	3 cut(s)	398, 1354, 2060
SmlI	CTYRAG	5 cut(s)	62, 336, 741, 917, 1982
SmoI	CTYRAG	5 cut(s)	62, 336, 741, 917, 1982
SseBI	AGGCCT	1 cut(s)	147
SsiI	CCGC	5 cut(s)	40, 808, 1345, 2139, 2199
SspMI	CTAG	9 cut(s)	285, 821, 968, 1280, 1368, 1476, 2079, 2270, 2426
SstI	GAGCTC	1 cut(s)	537
StuI	AGGCCT	1 cut(s)	147
StyD4I	CCNGG	7 cut(s)	136, 1132, 1215, 1375, 1387, 2070, 2284
StyI	CCWWGG	4 cut(s)	142, 318, 1321, 2242
TaaI	ACNGT	5 cut(s)	173, 379, 435, 451, 1889
TaiI	ACGT	4 cut(s)	417, 1905, 2158, 2254
TaqI	TCGA	8 cut(s)	125, 312, 366, 742, 918, 1127, 1551, 2378
TatI	WGTACW	1 cut(s)	1481
TauI	GCSGC	2 cut(s)	1347, 2142
TfiI	GAWTC	6 cut(s)	133, 999, 1142, 2333, 2418, 2472
Tru1I	TTAA	5 cut(s)	180, 231, 446, 1983, 2205
Tru9I	TTAA	5 cut(s)	180, 231, 446, 1983, 2205
TscAI	CASTG	4 cut(s)	178, 1314, 1416, 2095
TseI	GCWGC	5 cut(s)	35, 95, 473, 1246, 1961
TspDTI	ATGAA	9 cut(s)	410, 454, 690, 1223, 1515, 1828, 1843, 1849, 2250
TspGWI	ACGGA	2 cut(s)	634, 980
TspRI	CASTG	4 cut(s)	178, 1314, 1416, 2095
Van91I	CCANNNNNTGG	1 cut(s)	686
Vha464I	CTTAAG	1 cut(s)	1982
VneI	GTGCAC	2 cut(s)	2186, 2318
VpaK11BI	GGWCC	6 cut(s)	281, 805, 1136, 1383, 1532, 2464
XapI	RAATTY	2 cut(s)	152, 2237
XceI	RCATGY	1 cut(s)	1745
XhoI	CTCGAG	2 cut(s)	741, 917
XmiI	GTMKAC	2 cut(s)	984, 1500
XspI	CTAG	9 cut(s)	285, 821, 968, 1280, 1368, 1476, 2079, 2270, 2426
ZrmI	AGTACT	1 cut(s)	1483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.