Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0012623

Physical Location & Seq

Genomic Coordinates Reverse (-)

10334783 .. 10337648

Gene Structure 2866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00391680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2475 bp

ATGAGCATCATGGCAATGTCAAAGGCAAAGATAGGGCGGAATGAAACAAACAAAAGCCTTGAGAGTTTATTGGACATGGACAAAATAGTAGCTGCAAAGATTTCTGTTCCACTTCAATTGTCAAAGATGATTCCAGACCAAGGCCTTGAATTCAACAACCTTTCCTACAGTGTAACAAAAAAAATAAAGAAAGATGGGGTTTGGATCAAGAAGGAAGCTTATCTTCTTAATGACATCTCTGGTCATGCAGTACGAGGTGAGATTATGGCCATTATGGGGCCTAGTGGTGCAGGAAAATCCACATTTCTCGATGCCTTGGCAGGAAGGATTGCTCAAGGAAGTCTTGAAGGCTCTGTTAGAGTTGATGGAAAAACTGTTACTACAAGCTACATGAAGATGGTTTCCTCTTATGTGATGCAAGATGACCAACTATTCCCAATGTTGACAGTGTTTGAGACTTTCATGTTTGCAGCTGAGGTTAGGCTTCCTCCTTCTCTTTCCAAAGATGAGAAGAGAAAGAGAGTCTATGAGCTCCTTGACCAGCTCGGCTTGCAGACTGCAACACATACATATATTGGTGATGAGGGGAGGAGAGGAGTCTCAGGAGGTGAAAGACGCAGGGTATCAATCGGAATTGACATCATCCACAAACCTTCTCTACTGTTTCTTGATGAACCAACTTCTGGTCTTGACTCCACGAGTGCTTACAGTGTTGTAGAGAAGGTGAAAGAAATAGCTCGAGGCGGTAGCATTGTGCTCATGACTATCCATCAGCCTTCCTATCGTATTCAAAATCTCTTGGACCGCATGACAGTCCTAGCAAGAGGAAAACTAATATATTTGGGAAGTCCACATGGTTTGTCTGCTCACCTTTCTGGATTTGGAAGGCCAGTTCCTGATGGAGAAAACAACCTTGAGTATCTCCTGGATGTGATTAGAGAATATGATGACTCAAATGTAGGACTAGAACCGCTTGTTGTCTACCTTCGCGATAGAATCAAACCTGATCAGGTGTCAAGAACCCCAATTGCAAGAACACCAAAGACACCACGAACTCCTTATAAAAAGACCCCTTCGTCTAAACACATGCTCAGCCTCAGGAGCAACTCGACACCTCGACCAAATTCTCGCCCATCTGATGATTATGATGATGAGGAGGATGATGAGTTTGAGGATGAGACCTTTGACAACTCCCTGGAAAGGAAATCAATTCAGACACCAATGCAGCACTTTAGAAGTGGTGTCTATAACCCTCGTTTAGCTTCACATTTCTACAAAGATTTGTCAGTGTGGATATATCATGGTGTCAAAGGAACTCCTCGGCGCCCACCATCATGGACTCCTGCTAGAACTCCAGGAAGGACCCCTGGAAAGACACCAATCTCAGTGTCAGGACTAAGAAGTGTTGTTCAAAACCAATATGCAACACCTCAGCACTACCCTTCTAGGCCTAGTAGGACTAAAGCCCCTATTATATATAGCCCTTCCACCGATGACTCTTCATATGGGCAATCATATGAAGAGTTTGATATGGAAGAAGTTGAGCTTGATGAGATACAACTCAGGCCTAAGTTTGCAAACCCCTGGCTCCGTGAAGTTGTAATCCTCTCATGGCGTACAACACTCAATGTGATTCGTACTCCTGAACTCTTCCTCTCGCGAGAGATTGTGTTGGCTGTCATGGCACTCATTCTATCTTCCATTTTCAATAACCTACATGAGGAGAACTTCAAAAACATAAACAGGCTTCTCAACTTCTACATATTTGCTGTTTGCCTGGTCTTCTTTTCCTCCAATGATGCTGTCCCAACTTTCATCCAAGAAAGGTTCATTTTCATCAGGGAAACTTCTCATAATGCTTACCGTGCTTCTTCCTACGTCATATCTTCCCTTATTGTTTACCTCCCATTTTTTGCCATTCAAGCTTTCACATTTGCTGCCATAACCAGATTCATGCTTCACCTCAGAAGTAGTCTTTTCTACTTTTGGATAATCCTGTATGCCTCACTTATAACCACCAATGCATATGTCATGCTTGTGAGTGCCCTGGTTCCTAGTTACATTACTGGATATGCGGTAGTGATAGCTACCACAGCTCTGTTCTTTCTTACTTGTGGTTTTTTCTTGAAACGTACTCAGATCCCAAATTACTGGGTTTGGGTGCACTACATCTCTGCCATTAAGTACCCATTTGAGGCAATGCTAACAAATGAATTCAAAAATATACACTGCTACACTGGCAATGCAGCGGATCTTTCACCTGGGCCTTTAGGAGATCTGAAGTTGAGTAAAGTGCACAATGACACACCATCGCTTAGAGGTTGCCTGCTGATTGGACAAGATGTTATACAGTCAATGGATATCAATCATGATAGCATTTGGTATGATATCGGAATCTTGCTAGCTTGGGGTGTTCTATACCGGCTTCTCTTCTACATGGTCCTAAGATTCTATTCCAAGAATGAGAGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005775 GO:0005886 GO:0006810 GO:0007034 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009987 GO:0010208 GO:0010927 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016021 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0022804 GO:0022857 GO:0030198 GO:0031224 GO:0031974 GO:0032501 GO:0032502 GO:0032989 GO:0042221 GO:0042493 GO:0042623 GO:0042626 GO:0042891 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043492 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0070013 GO:0071840 GO:0071944 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

824

Amino Acids

93.48

Weight (kDa)

8.92

Isoelectric Point (pI)

41.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	76 - 228	7e-29	ABC transporter
ABC2_membrane	PF01061	532 - 739	2.8e-38	ABC-2 type transporter
ABC2_membrane_3	PF12698	573 - 811	5.7e-07	ABC-2 family transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012623)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g17530
malus_domestica	MD06G1228700.v1.1 MD14G1237900.v1.1
prunus_persica	Prupe.5G235100_v2.0.a1
pyrus_communis	pycom06g20500 pycom14g19900
rosa_chinensis	RchiOBHm_Chr3g0493261 RchiOBHm_Chr7g0178121
rosa_laevigata	RLG00000005469
rosa_multiflora	Rmu_sc0000425.1_g000011 Rmu_sc0005324.1_g000001
rosa_roxburghii	Rroxscaffold_6G00391680
rosa_rugosa	Rorug03G0260000 Rorug06G0413700
rosa_samantha	Rh3DG344200 Rh7CG012900 Rh7DG013200
rosa_wichuraiana	Rw3G027160 Rw7G001030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1062, 2012
AasI	GACNNNNNNGTC	1 cut(s)	1075
AccB1I	GGYRCC	1 cut(s)	1323
AccB7I	CCANNNNNTGG	1 cut(s)	683
AccI	GTMKAC	1 cut(s)	981
AccII	CGCG	2 cut(s)	990, 1660
AciI	CCGC	6 cut(s)	37, 744, 805, 971, 2075, 2249
AclWI	GGATC	3 cut(s)	212, 2134, 2259
AcoI	YGGCCR	1 cut(s)	267
AcsI	RAATTY	3 cut(s)	149, 1123, 2213
AcuI	CTGAAG	1 cut(s)	2300
AcyI	GRCGYC	1 cut(s)	1324
AfaI	GTAC	5 cut(s)	252, 1618, 1639, 2134, 2186
AfiI	CCNNNNNNNGG	6 cut(s)	140, 276, 683, 1200, 1720, 2194
AjnI	CCWGG	8 cut(s)	924, 1194, 1354, 1366, 1583, 1776, 2046, 2260
AloI	GAACNNNNNNTCC	2 cut(s)	876, 908
Alw21I	GWGCWC	4 cut(s)	534, 759, 2166, 2298
Alw26I	GTCTC	3 cut(s)	449, 604, 1172
Alw44I	GTGCAC	2 cut(s)	2162, 2294
AlwI	GGATC	3 cut(s)	212, 2134, 2259
AlwNI	CAGNNNCTG	1 cut(s)	896
Ama87I	CYCGRG	1 cut(s)	738
AoxI	GGCC	7 cut(s)	142, 267, 278, 887, 1448, 1565, 2264
ApaLI	GTGCAC	2 cut(s)	2162, 2294
ApeKI	GCWGC	5 cut(s)	92, 470, 1225, 1937, 2246
ApoI	RAATTY	3 cut(s)	149, 1123, 2213
AspLEI	GCGC	1 cut(s)	1326
AspS9I	GGNCC	5 cut(s)	278, 802, 1362, 2264, 2440
AsuHPI	GGTGA	7 cut(s)	269, 590, 620, 736, 860, 1952, 2250
AsuNHI	GCTAGC	1 cut(s)	2401
AvaI	CYCGRG	1 cut(s)	738
AvaII	GGWCC	3 cut(s)	802, 1362, 2440
AxyI	CCTNAGG	1 cut(s)	1097
BaeGI	GKGCMC	3 cut(s)	2047, 2166, 2298
BalI	TGGCCA	1 cut(s)	269
BanI	GGYRCC	1 cut(s)	1323
BanII	GRGCYC	1 cut(s)	534
BauI	CACGAG	1 cut(s)	697
BbsI	GAAGAC	1 cut(s)	1774
Bbv12I	GWGCWC	4 cut(s)	534, 759, 2166, 2298
BbvCI	CCTCAGC	2 cut(s)	474, 1431
BbvI	GCAGC	5 cut(s)	79, 482, 1237, 1924, 2258
BccI	CCATC	8 cut(s)	188, 359, 391, 777, 893, 1141, 1339, 2317
BciT130I	CCWGG	8 cut(s)	926, 1196, 1356, 1368, 1585, 1778, 2048, 2262
BclI	TGATCA	1 cut(s)	1006
BcoDI	GTCTC	3 cut(s)	449, 604, 1172
BfaI	CTAG	8 cut(s)	282, 818, 965, 1347, 1446, 1452, 2055, 2402
BfmI	CTRYAG	1 cut(s)	166
BfoI	RGCGCY	1 cut(s)	1327
BglII	AGATCT	1 cut(s)	2275
BisI	GCNGC	5 cut(s)	93, 471, 1226, 1938, 2247
BlpI	GCTNAGC	1 cut(s)	1091
BlsI	GCNGC	5 cut(s)	94, 472, 1227, 1939, 2248
Bme1390I	CCNGG	8 cut(s)	926, 1196, 1356, 1368, 1585, 1778, 2048, 2262
Bme18I	GGWCC	3 cut(s)	802, 1362, 2440
BmeT110I	CYCGRG	1 cut(s)	738
BmgT120I	GGNCC	5 cut(s)	278, 802, 1362, 2264, 2440
BmiI	GGNNCC	5 cut(s)	279, 1325, 1364, 1589, 2052
BmrFI	CCNGG	8 cut(s)	926, 1196, 1356, 1368, 1585, 1778, 2048, 2262
BmrI	ACTGGG	1 cut(s)	2161
BmsI	GCATC	4 cut(s)	15, 301, 405, 1789
BmtI	GCTAGC	1 cut(s)	2405
BmuI	ACTGGG	1 cut(s)	2161
BpiI	GAAGAC	1 cut(s)	1774
BpmI	CTGGAG	1 cut(s)	1338
Bpu10I	CCTNAGC	2 cut(s)	474, 1431
Bpu1102I	GCTNAGC	1 cut(s)	1091
BpuEI	CTTGAG	3 cut(s)	80, 318, 935
BsaBI	GATNNNNATC	1 cut(s)	2364
BsaHI	GRCGYC	1 cut(s)	1324
BsaI	GGTCTC	1 cut(s)	1172
BsaJI	CCNNGG	8 cut(s)	139, 315, 1194, 1319, 1366, 1583, 2046, 2261
Bsc4I	CCNNNNNNNGG	6 cut(s)	140, 276, 683, 1200, 1720, 2194
Bse118I	RCCGGY	1 cut(s)	2421
Bse1I	ACTGG	4 cut(s)	890, 2071, 2156, 2242
Bse21I	CCTNAGG	1 cut(s)	1097
Bse3DI	GCAATG	3 cut(s)	21, 2205, 2248
Bse8I	GATNNNNATC	1 cut(s)	2364
BseBI	CCWGG	8 cut(s)	926, 1196, 1356, 1368, 1585, 1778, 2048, 2262
BseDI	CCNNGG	8 cut(s)	139, 315, 1194, 1319, 1366, 1583, 2046, 2261
BseGI	GGATG	5 cut(s)	642, 934, 1165, 1180, 1815
BseJI	GATNNNNATC	1 cut(s)	2364
BseLI	CCNNNNNNNGG	6 cut(s)	140, 276, 683, 1200, 1720, 2194
BseMI	GCAATG	3 cut(s)	21, 2205, 2248
BseMII	CTCAG	9 cut(s)	465, 615, 1105, 1111, 1398, 1445, 1576, 1978, 2150
BseNI	ACTGG	4 cut(s)	890, 2071, 2156, 2242
BseRI	GAGGAG	5 cut(s)	604, 609, 1169, 1308, 1736
BseSI	GKGCMC	3 cut(s)	2047, 2166, 2298
BseXI	GCAGC	5 cut(s)	79, 482, 1237, 1924, 2258
BsgI	GTGCAG	1 cut(s)	309
Bsh1236I	CGCG	2 cut(s)	990, 1660
BshFI	GGCC	7 cut(s)	144, 269, 280, 889, 1450, 1567, 2266
BshNI	GGYRCC	1 cut(s)	1323
BsiHKAI	GWGCWC	4 cut(s)	534, 759, 2166, 2298
BsiHKCI	CYCGRG	1 cut(s)	738
BsiSI	CCGG	1 cut(s)	2422
BslFI	GGGAC	1 cut(s)	1790
BslI	CCNNNNNNNGG	6 cut(s)	140, 276, 683, 1200, 1720, 2194
BsmAI	GTCTC	3 cut(s)	449, 604, 1172
BsmFI	GGGAC	1 cut(s)	1790
BsnI	GGCC	7 cut(s)	144, 269, 280, 889, 1450, 1567, 2266
Bso31I	GGTCTC	1 cut(s)	1172
BsoBI	CYCGRG	1 cut(s)	738
Bsp1286I	GDGCHC	5 cut(s)	534, 759, 2047, 2166, 2298
Bsp143I	GATC	5 cut(s)	204, 1006, 2139, 2251, 2275
Bsp1720I	GCTNAGC	1 cut(s)	1091
Bsp68I	TCGCGA	2 cut(s)	990, 1660
BspACI	CCGC	6 cut(s)	37, 744, 805, 971, 2075, 2249
BspANI	GGCC	7 cut(s)	144, 269, 280, 889, 1450, 1567, 2266
BspCNI	CTCAG	9 cut(s)	466, 614, 1104, 1110, 1397, 1444, 1575, 1977, 2149
BspFNI	CGCG	2 cut(s)	990, 1660
BspHI	TCATGA	2 cut(s)	759, 2368
BspLI	GGNNCC	5 cut(s)	279, 1325, 1364, 1589, 2052
BspOI	GCTAGC	1 cut(s)	2405
BspPI	GGATC	3 cut(s)	212, 2134, 2259
BspT107I	GGYRCC	1 cut(s)	1323
BspTNI	GGTCTC	1 cut(s)	1172
BsrDI	GCAATG	3 cut(s)	21, 2205, 2248
BsrFI	RCCGGY	1 cut(s)	2421
BsrI	ACTGG	4 cut(s)	890, 2071, 2156, 2242
BssAI	RCCGGY	1 cut(s)	2421
BssECI	CCNNGG	8 cut(s)	139, 315, 1194, 1319, 1366, 1583, 2046, 2261
BssMI	GATC	5 cut(s)	204, 1006, 2139, 2251, 2275
BssNI	GRCGYC	1 cut(s)	1324
BssSI	CACGAG	1 cut(s)	697
BssT1I	CCWWGG	2 cut(s)	139, 315
Bst2BI	CACGAG	1 cut(s)	697
Bst2UI	CCWGG	8 cut(s)	926, 1196, 1356, 1368, 1585, 1778, 2048, 2262
Bst4CI	ACNGT	8 cut(s)	170, 376, 448, 663, 710, 814, 1865, 2352
Bst6I	CTCTTC	5 cut(s)	506, 1504, 1515, 1655, 2435
BstACI	GRCGYC	1 cut(s)	1324
BstC8I	GCNNGC	3 cut(s)	551, 2327, 2403
BstENI	CCTNNNNNAGG	1 cut(s)	1718
BstF5I	GGATG	5 cut(s)	642, 934, 1165, 1180, 1815
BstFNI	CGCG	2 cut(s)	990, 1660
BstH2I	RGCGCY	1 cut(s)	1327
BstHHI	GCGC	1 cut(s)	1326
BstKTI	GATC	5 cut(s)	207, 1009, 2142, 2254, 2278
BstMAI	GTCTC	3 cut(s)	449, 604, 1172
BstMBI	GATC	5 cut(s)	204, 1006, 2139, 2251, 2275
BstMWI	GCNNNNNNNGC	7 cut(s)	550, 1101, 1682, 1865, 1922, 2093, 2238
BstNI	CCWGG	8 cut(s)	926, 1196, 1356, 1368, 1585, 1778, 2048, 2262
BstNSI	RCATGY	1 cut(s)	1090
BstSCI	CCNGG	8 cut(s)	924, 1194, 1354, 1366, 1583, 1776, 2046, 2260
BstSFI	CTRYAG	1 cut(s)	166
BstSLI	GKGCMC	3 cut(s)	2047, 2166, 2298
BstUI	CGCG	2 cut(s)	990, 1660
BstV1I	GCAGC	5 cut(s)	79, 482, 1237, 1924, 2258
BstV2I	GAAGAC	1 cut(s)	1774
BstX2I	RGATCY	3 cut(s)	2139, 2251, 2275
BstXI	CCANNNNNNTGG	2 cut(s)	1335, 2151
BstYI	RGATCY	3 cut(s)	2139, 2251, 2275
Bsu36I	CCTNAGG	1 cut(s)	1097
BsuRI	GGCC	7 cut(s)	144, 269, 280, 889, 1450, 1567, 2266
BtgZI	GCGATG	1 cut(s)	2295
BtsCI	GGATG	5 cut(s)	642, 934, 1165, 1180, 1815
BtsI	GCAGTG	1 cut(s)	2227
BtsIMutI	CAGTG	7 cut(s)	175, 453, 715, 1293, 1392, 2227, 2235
BtuMI	TCGCGA	2 cut(s)	990, 1660
Cac8I	GCNNGC	3 cut(s)	551, 2327, 2403
CaiI	CAGNNNCTG	1 cut(s)	896
CciI	TCATGA	2 cut(s)	759, 2368
CfoI	GCGC	1 cut(s)	1326
Cfr10I	RCCGGY	1 cut(s)	2421
Cfr13I	GGNCC	5 cut(s)	278, 802, 1362, 2264, 2440
CseI	GACGC	1 cut(s)	624
Csp6I	GTAC	5 cut(s)	251, 1617, 1638, 2133, 2185
CspCI	CAANNNNNGTGG	4 cut(s)	99, 134, 840, 875
CviQI	GTAC	5 cut(s)	251, 1617, 1638, 2133, 2185
DinI	GGCGCC	1 cut(s)	1325
DpnI	GATC	5 cut(s)	206, 1008, 2141, 2253, 2277
DpnII	GATC	5 cut(s)	204, 1006, 2139, 2251, 2275
DrdI	GACNNNNNNGTC	1 cut(s)	1075
DseDI	GACNNNNNNGTC	1 cut(s)	1075
EaeI	YGGCCR	1 cut(s)	267
Eam1104I	CTCTTC	5 cut(s)	506, 1504, 1515, 1655, 2435
EarI	CTCTTC	5 cut(s)	506, 1504, 1515, 1655, 2435
EciI	GGCGGA	1 cut(s)	52
Ecl136II	GAGCTC	1 cut(s)	532
Eco130I	CCWWGG	2 cut(s)	139, 315
Eco147I	AGGCCT	3 cut(s)	144, 1450, 1567
Eco24I	GRGCYC	1 cut(s)	534
Eco31I	GGTCTC	1 cut(s)	1172
Eco32I	GATATC	2 cut(s)	2362, 2389
Eco47I	GGWCC	3 cut(s)	802, 1362, 2440
Eco53kI	GAGCTC	1 cut(s)	532
Eco57I	CTGAAG	1 cut(s)	2300
Eco81I	CCTNAGG	1 cut(s)	1097
Eco88I	CYCGRG	1 cut(s)	738
EcoICRI	GAGCTC	1 cut(s)	532
EcoNI	CCTNNNNNAGG	1 cut(s)	1718
EcoO109I	RGGNCCY	2 cut(s)	278, 1362
EcoRI	GAATTC	2 cut(s)	149, 2213
EcoRII	CCWGG	8 cut(s)	924, 1194, 1354, 1366, 1583, 1776, 2046, 2260
EcoRV	GATATC	2 cut(s)	2362, 2389
EcoT14I	CCWWGG	2 cut(s)	139, 315
EcoT22I	ATGCAT	1 cut(s)	2026
EcoT38I	GRGCYC	1 cut(s)	534
EgeI	GGCGCC	1 cut(s)	1325
EheI	GGCGCC	1 cut(s)	1325
ErhI	CCWWGG	2 cut(s)	139, 315
FalI	AAGNNNNNCTT	6 cut(s)	207, 239, 327, 359, 1530, 1562
FaqI	GGGAC	1 cut(s)	1790
FauNDI	CATATG	3 cut(s)	1504, 1516, 2026
FbaI	TGATCA	1 cut(s)	1006
FblI	GTMKAC	1 cut(s)	981
Fnu4HI	GCNGC	5 cut(s)	93, 471, 1226, 1938, 2247
FokI	GGATG	5 cut(s)	629, 941, 1172, 1187, 1802
FriOI	GRGCYC	1 cut(s)	534
Fsp4HI	GCNGC	5 cut(s)	93, 471, 1226, 1938, 2247
FspBI	CTAG	8 cut(s)	282, 818, 965, 1347, 1446, 1452, 2055, 2402
GlaI	GCGC	1 cut(s)	1325
GluI	GCNGC	5 cut(s)	93, 471, 1226, 1938, 2247
GsuI	CTGGAG	1 cut(s)	1338
HaeII	RGCGCY	1 cut(s)	1327
HaeIII	GGCC	7 cut(s)	144, 269, 280, 889, 1450, 1567, 2266
HapII	CCGG	1 cut(s)	2422
HgaI	GACGC	1 cut(s)	624
HhaI	GCGC	1 cut(s)	1326
Hin1I	GRCGYC	1 cut(s)	1324
Hin6I	GCGC	1 cut(s)	1324
HinP1I	GCGC	1 cut(s)	1324
HincII	GTYRAC	1 cut(s)	444
HindII	GTYRAC	1 cut(s)	444
HindIII	AAGCTT	2 cut(s)	216, 1923
HpaII	CCGG	1 cut(s)	2422
HphI	GGTGA	7 cut(s)	269, 590, 620, 736, 860, 1952, 2250
Hpy166II	GTNNAC	6 cut(s)	444, 851, 982, 1900, 2164, 2296
Hpy188I	TCNGA	7 cut(s)	632, 1138, 1215, 1967, 2139, 2280, 2393
Hpy8I	GTNNAC	6 cut(s)	444, 851, 982, 1900, 2164, 2296
HpyCH4III	ACNGT	8 cut(s)	170, 376, 448, 663, 710, 814, 1865, 2352
HpyCH4IV	ACGT	2 cut(s)	1878, 2131
HpyF10VI	GCNNNNNNNGC	7 cut(s)	550, 1101, 1682, 1865, 1922, 2093, 2238
HpySE526I	ACGT	2 cut(s)	1878, 2131
Hsp92I	GRCGYC	1 cut(s)	1324
HspAI	GCGC	1 cut(s)	1324
KasI	GGCGCC	1 cut(s)	1323
Ksp22I	TGATCA	1 cut(s)	1006
Kzo9I	GATC	5 cut(s)	204, 1006, 2139, 2251, 2275
LmnI	GCTCC	3 cut(s)	537, 1101, 1593
Lsp1109I	GCAGC	5 cut(s)	79, 482, 1237, 1924, 2258
LweI	GCATC	4 cut(s)	15, 301, 405, 1789
MaeI	CTAG	8 cut(s)	282, 818, 965, 1347, 1446, 1452, 2055, 2402
MaeII	ACGT	2 cut(s)	1878, 2131
MaeIII	GTNAC	3 cut(s)	172, 376, 2057
MalI	GATC	5 cut(s)	206, 1008, 2141, 2253, 2277
MboI	GATC	5 cut(s)	204, 1006, 2139, 2251, 2275
MfeI	CAATTG	2 cut(s)	116, 1026
MflI	RGATCY	3 cut(s)	2139, 2251, 2275
MhlI	GDGCHC	5 cut(s)	534, 759, 2047, 2166, 2298
MlsI	TGGCCA	1 cut(s)	269
MluCI	AATT	8 cut(s)	116, 149, 633, 1026, 1123, 1209, 2146, 2213
MluNI	TGGCCA	1 cut(s)	269
Mly113I	GGCGCC	1 cut(s)	1324
MlyI	GAGTC	6 cut(s)	531, 606, 686, 944, 1333, 1490
Mox20I	TGGCCA	1 cut(s)	269
Mph1103I	ATGCAT	1 cut(s)	2026
MscI	TGGCCA	1 cut(s)	269
MseI	TTAA	2 cut(s)	228, 2181
MslI	CAYNNNNRTG	4 cut(s)	14, 395, 1333, 2036
Msp20I	TGGCCA	1 cut(s)	269
MspA1I	CMGCKG	2 cut(s)	473, 2249
MspI	CCGG	1 cut(s)	2422
MspR9I	CCNGG	8 cut(s)	926, 1196, 1356, 1368, 1585, 1778, 2048, 2262
MunI	CAATTG	2 cut(s)	116, 1026
MvaI	CCWGG	8 cut(s)	926, 1196, 1356, 1368, 1585, 1778, 2048, 2262
MvnI	CGCG	2 cut(s)	990, 1660
MwoI	GCNNNNNNNGC	7 cut(s)	550, 1101, 1682, 1865, 1922, 2093, 2238
NarI	GGCGCC	1 cut(s)	1324
NdeI	CATATG	3 cut(s)	1504, 1516, 2026
NdeII	GATC	5 cut(s)	204, 1006, 2139, 2251, 2275
NheI	GCTAGC	1 cut(s)	2401
NlaIV	GGNNCC	5 cut(s)	279, 1325, 1364, 1589, 2052
NmeAIII	GCCGAG	2 cut(s)	525, 1300
NruI	TCGCGA	2 cut(s)	990, 1660
NsiI	ATGCAT	1 cut(s)	2026
NspI	RCATGY	1 cut(s)	1090
PaeR7I	CTCGAG	1 cut(s)	738
PagI	TCATGA	2 cut(s)	759, 2368
PceI	AGGCCT	3 cut(s)	144, 1450, 1567
PfeI	GAWTC	6 cut(s)	130, 996, 1633, 1950, 2394, 2448
PflMI	CCANNNNNTGG	1 cut(s)	683
PfoI	TCCNGGA	2 cut(s)	924, 1354
PkrI	GCNGC	5 cut(s)	94, 472, 1227, 1939, 2248
PleI	GAGTC	6 cut(s)	530, 605, 686, 944, 1333, 1490
PluTI	GGCGCC	1 cut(s)	1327
PpsI	GAGTC	6 cut(s)	530, 605, 686, 944, 1333, 1490
PpuMI	RGGWCCY	1 cut(s)	1362
PsiI	TTATAA	2 cut(s)	1062, 2012
Psp124BI	GAGCTC	1 cut(s)	534
Psp5II	RGGWCCY	1 cut(s)	1362
Psp6I	CCWGG	8 cut(s)	924, 1194, 1354, 1366, 1583, 1776, 2046, 2260
PspGI	CCWGG	8 cut(s)	924, 1194, 1354, 1366, 1583, 1776, 2046, 2260
PspN4I	GGNNCC	5 cut(s)	279, 1325, 1364, 1589, 2052
PspPI	GGNCC	5 cut(s)	278, 802, 1362, 2264, 2440
PspPPI	RGGWCCY	1 cut(s)	1362
PspXI	VCTCGAGB	1 cut(s)	738
PstNI	CAGNNNCTG	1 cut(s)	896
PsuI	RGATCY	3 cut(s)	2139, 2251, 2275
PvuII	CAGCTG	1 cut(s)	473
RruI	TCGCGA	2 cut(s)	990, 1660
RsaI	GTAC	5 cut(s)	252, 1618, 1639, 2134, 2186
RsaNI	GTAC	5 cut(s)	251, 1617, 1638, 2133, 2185
RseI	CAYNNNNRTG	4 cut(s)	14, 395, 1333, 2036
SacI	GAGCTC	1 cut(s)	534
SaqAI	TTAA	2 cut(s)	228, 2181
SatI	GCNGC	5 cut(s)	93, 471, 1226, 1938, 2247
Sau3AI	GATC	5 cut(s)	204, 1006, 2139, 2251, 2275
Sau96I	GGNCC	5 cut(s)	278, 802, 1362, 2264, 2440
SchI	GAGTC	6 cut(s)	531, 606, 686, 944, 1333, 1490
ScrFI	CCNGG	8 cut(s)	926, 1196, 1356, 1368, 1585, 1778, 2048, 2262
SduI	GDGCHC	5 cut(s)	534, 759, 2047, 2166, 2298
SfaNI	GCATC	4 cut(s)	15, 301, 405, 1789
SfcI	CTRYAG	1 cut(s)	166
SfoI	GGCGCC	1 cut(s)	1325
Sfr274I	CTCGAG	1 cut(s)	738
SinI	GGWCC	3 cut(s)	802, 1362, 2440
SlaI	CTCGAG	1 cut(s)	738
SmiMI	CAYNNNNRTG	4 cut(s)	14, 395, 1333, 2036
SmlI	CTYRAG	4 cut(s)	59, 333, 738, 914
SmoI	CTYRAG	4 cut(s)	59, 333, 738, 914
Sse9I	AATT	8 cut(s)	116, 149, 633, 1026, 1123, 1209, 2146, 2213
SseBI	AGGCCT	3 cut(s)	144, 1450, 1567
SsiI	CCGC	6 cut(s)	37, 744, 805, 971, 2075, 2249
SspDI	GGCGCC	1 cut(s)	1323
SspMI	CTAG	8 cut(s)	282, 818, 965, 1347, 1446, 1452, 2055, 2402
SstI	GAGCTC	1 cut(s)	534
StuI	AGGCCT	3 cut(s)	144, 1450, 1567
StyD4I	CCNGG	8 cut(s)	924, 1194, 1354, 1366, 1583, 1776, 2046, 2260
StyI	CCWWGG	2 cut(s)	139, 315
TaaI	ACNGT	8 cut(s)	170, 376, 448, 663, 710, 814, 1865, 2352
TaiI	ACGT	2 cut(s)	1881, 2134
TaqI	TCGA	4 cut(s)	309, 739, 1109, 1117
TasI	AATT	8 cut(s)	116, 149, 633, 1026, 1123, 1209, 2146, 2213
TfiI	GAWTC	6 cut(s)	130, 996, 1633, 1950, 2394, 2448
Tru1I	TTAA	2 cut(s)	228, 2181
Tru9I	TTAA	2 cut(s)	228, 2181
TscAI	CASTG	7 cut(s)	175, 453, 715, 1293, 1392, 2234, 2242
TseI	GCWGC	5 cut(s)	92, 470, 1225, 1937, 2246
TspGWI	ACGGA	1 cut(s)	1580
TspRI	CASTG	7 cut(s)	175, 453, 715, 1293, 1392, 2234, 2242
Van91I	CCANNNNNTGG	1 cut(s)	683
VneI	GTGCAC	2 cut(s)	2162, 2294
VpaK11BI	GGWCC	3 cut(s)	802, 1362, 2440
XagI	CCTNNNNNAGG	1 cut(s)	1718
XapI	RAATTY	3 cut(s)	149, 1123, 2213
XceI	RCATGY	1 cut(s)	1090
XhoI	CTCGAG	1 cut(s)	738
XmiI	GTMKAC	1 cut(s)	981
XspI	CTAG	8 cut(s)	282, 818, 965, 1347, 1446, 1452, 2055, 2402
Zsp2I	ATGCAT	1 cut(s)	2026

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.