Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0012623

Physical Location & Seq

Genomic Coordinates Forward (+)

24985110 .. 24986036

Gene Structure 927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0260000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGCCCGAAAAGGGTGTATTGTTCATGTACAATTCTCTCATAAGGGGTTACTCTAGTGCTGGGCTTTGTGACGAGGCTATTGTTCTCTATGTTCACATGGTGCTTCAGGGTGTTTTGCTGGATAAGTTTACATTCCCGCTTGCACTGAGCGCGTGCTCAAAGACTGTGGCTTTCTGTGAAGGGGTTCAGCTCCATGGCTCGCTTGTGAAGATGGGTTTAGAGCAAGATGTGTTTATTGGGAATTCTTTGATTCATTTCTATGCAGAATGTGGGGACTTGGATTATGCCCACAAGGTGTTTGATGAAATGCTTGAGAGAAACATCGTGTCGTGGACTAGTTCGATATGTGGTTATGGTAGGAGGAGTATGCCAAAGGATGCTGTTTCTTTGTTTTTCGAGATGGTGGCTGCCGGTGTTCAGCCCAATTCGGTGACCATGGTGTGTGTTATTTCTGCTTGTGCAAAGTTGAAGGATGTTGCGTTGAGTGAGACAGTGTGTGCTTACATTGGGGAGTCTGGACTCAAGACTAATATGCTTATGGTGAATTCACTTGTTGATATGTATATGAAATGTGGAGCTACTGATGCCGCAAAGCGGCTTTTTGATGAATGTGTGGAGAAAAACTTGGTTCTTTACAACACCATTTTGTCAAATTATGTGCGCCAGGGACTGGCTAGTGAAGCAGTTTCTGTTATGGGTGAAATGCTACAACAGGGCCCAAGACCCGACAAGGTTACCATGTTGGCTGCAATTTCAGCTTGCGCACAACTAAGTGATTCTCTCTCAGGTAAGTGTTGCCATGGTTATGTTCTAAGGCATGGACTAGAAGGTTGGGATACCATTTGTAATGCCATGATTGACATGTACATGAAGTGCGGCCAACAAGAGATGGCCTGCATAATTTTTGACAAGAGAGGCTACAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005775 GO:0005886 GO:0006810 GO:0007034 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009987 GO:0010208 GO:0010927 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016021 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0022804 GO:0022857 GO:0030198 GO:0031224 GO:0031974 GO:0032501 GO:0032502 GO:0032989 GO:0042221 GO:0042493 GO:0042623 GO:0042626 GO:0042891 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043492 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0070013 GO:0071840 GO:0071944 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

308

Amino Acids

33.81

Weight (kDa)

5.4

Isoelectric Point (pI)

44.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	8 - 54	1.9e-06	PPR repeat family
PPR	PF01535	8 - 38	2.7e-06	PPR repeat
PPR_2	PF13041	106 - 155	2.2e-10	PPR repeat family
PPR_2	PF13041	208 - 255	1.9e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012623)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g17530
malus_domestica	MD06G1228700.v1.1 MD14G1237900.v1.1
prunus_persica	Prupe.5G235100_v2.0.a1
pyrus_communis	pycom06g20500 pycom14g19900
rosa_chinensis	RchiOBHm_Chr3g0493261 RchiOBHm_Chr7g0178121
rosa_laevigata	RLG00000005469
rosa_multiflora	Rmu_sc0000425.1_g000011 Rmu_sc0005324.1_g000001
rosa_roxburghii	Rroxscaffold_6G00391680
rosa_rugosa	Rorug03G0260000 Rorug06G0413700
rosa_samantha	Rh3DG344200 Rh7CG012900 Rh7DG013200
rosa_wichuraiana	Rw3G027160 Rw7G001030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	763
AccB7I	CCANNNNNTGG	1 cut(s)	670
AccII	CGCG	1 cut(s)	152
AciI	CCGC	4 cut(s)	137, 588, 595, 876
AcoI	YGGCCR	1 cut(s)	877
AcsI	RAATTY	2 cut(s)	241, 544
AcuI	CTGAAG	1 cut(s)	89
AdeI	CACNNNGTG	2 cut(s)	100, 295
AfaI	GTAC	2 cut(s)	29, 866
AfiI	CCNNNNNNNGG	3 cut(s)	11, 594, 670
AflIII	ACRYGT	1 cut(s)	861
AgsI	TTSAA	1 cut(s)	469
AhlI	ACTAGT	1 cut(s)	335
AjnI	CCWGG	1 cut(s)	663
AluBI	AGCT	3 cut(s)	190, 578, 758
AluI	AGCT	3 cut(s)	190, 578, 758
Alw21I	GWGCWC	1 cut(s)	158
Alw26I	GTCTC	1 cut(s)	482
AlwNI	CAGNNNCTG	2 cut(s)	670, 689
AoxI	GGCC	3 cut(s)	715, 877, 891
ApaI	GGGCCC	1 cut(s)	719
ApeKI	GCWGC	2 cut(s)	407, 746
ApoI	RAATTY	2 cut(s)	241, 544
Asp700I	GAANNNNTTC	1 cut(s)	183
AspLEI	GCGC	3 cut(s)	152, 663, 764
AspS9I	GGNCC	2 cut(s)	715, 716
AsuHPI	GGTGA	3 cut(s)	442, 553, 710
BaeGI	GKGCMC	1 cut(s)	719
BanII	GRGCYC	1 cut(s)	719
Bbv12I	GWGCWC	1 cut(s)	158
BbvI	GCAGC	2 cut(s)	394, 733
BccI	CCATC	3 cut(s)	205, 394, 883
BciT130I	CCWGG	1 cut(s)	665
BciVI	GTATCC	1 cut(s)	829
BcoDI	GTCTC	1 cut(s)	482
BcuI	ACTAGT	1 cut(s)	335
BfaI	CTAG	4 cut(s)	54, 336, 675, 824
BfuI	GTATCC	1 cut(s)	829
BisI	GCNGC	5 cut(s)	408, 588, 596, 747, 877
BlsI	GCNGC	5 cut(s)	409, 589, 597, 748, 878
Bme1390I	CCNGG	1 cut(s)	665
BmgT120I	GGNCC	2 cut(s)	715, 716
BmiI	GGNNCC	1 cut(s)	717
BmrFI	CCNGG	1 cut(s)	665
BmsI	GCATC	2 cut(s)	367, 574
BpuEI	CTTGAG	2 cut(s)	332, 506
BsaJI	CCNNGG	4 cut(s)	193, 435, 664, 799
Bsc4I	CCNNNNNNNGG	3 cut(s)	11, 594, 670
Bse118I	RCCGGY	1 cut(s)	410
Bse1I	ACTGG	1 cut(s)	675
BseBI	CCWGG	1 cut(s)	665
BseDI	CCNNGG	4 cut(s)	193, 435, 664, 799
BseGI	GGATG	2 cut(s)	382, 478
BseLI	CCNNNNNNNGG	3 cut(s)	11, 594, 670
BseMII	CTCAG	2 cut(s)	137, 798
BseNI	ACTGG	1 cut(s)	675
BseRI	GAGGAG	1 cut(s)	376
BseSI	GKGCMC	1 cut(s)	719
BseXI	GCAGC	2 cut(s)	394, 733
BseYI	CCCAGC	1 cut(s)	59
Bsh1236I	CGCG	1 cut(s)	152
BshFI	GGCC	3 cut(s)	717, 879, 893
BsiHKAI	GWGCWC	1 cut(s)	158
BsiSI	CCGG	1 cut(s)	411
BslFI	GGGAC	2 cut(s)	287, 681
BslI	CCNNNNNNNGG	3 cut(s)	11, 594, 670
BsmAI	GTCTC	1 cut(s)	482
BsmFI	GGGAC	2 cut(s)	287, 681
BsnI	GGCC	3 cut(s)	717, 879, 893
Bsp120I	GGGCCC	1 cut(s)	715
Bsp1286I	GDGCHC	2 cut(s)	158, 719
Bsp1407I	TGTACA	2 cut(s)	27, 864
Bsp19I	CCATGG	3 cut(s)	193, 435, 799
BspACI	CCGC	4 cut(s)	137, 588, 595, 876
BspANI	GGCC	3 cut(s)	717, 879, 893
BspCNI	CTCAG	2 cut(s)	138, 797
BspFNI	CGCG	1 cut(s)	152
BspLI	GGNNCC	1 cut(s)	717
BsrFI	RCCGGY	1 cut(s)	410
BsrGI	TGTACA	2 cut(s)	27, 864
BsrI	ACTGG	1 cut(s)	675
BssAI	RCCGGY	1 cut(s)	410
BssECI	CCNNGG	4 cut(s)	193, 435, 664, 799
BssT1I	CCWWGG	3 cut(s)	193, 435, 799
Bst2UI	CCWGG	1 cut(s)	665
Bst4CI	ACNGT	2 cut(s)	166, 493
BstAUI	TGTACA	2 cut(s)	27, 864
BstC8I	GCNNGC	5 cut(s)	141, 154, 200, 760, 895
BstDEI	CTNAG	4 cut(s)	146, 770, 784, 812
BstDSI	CCRYGG	3 cut(s)	193, 435, 799
BstEII	GGTNACC	2 cut(s)	430, 733
BstF5I	GGATG	2 cut(s)	382, 478
BstFNI	CGCG	1 cut(s)	152
BstHHI	GCGC	3 cut(s)	152, 663, 764
BstMAI	GTCTC	1 cut(s)	482
BstMWI	GCNNNNNNNGC	4 cut(s)	149, 584, 680, 755
BstNI	CCWGG	1 cut(s)	665
BstNSI	RCATGY	1 cut(s)	865
BstPI	GGTNACC	2 cut(s)	430, 733
BstSCI	CCNGG	1 cut(s)	663
BstSLI	GKGCMC	1 cut(s)	719
BstUI	CGCG	1 cut(s)	152
BstV1I	GCAGC	2 cut(s)	394, 733
BsuI	GTATCC	1 cut(s)	829
BsuRI	GGCC	3 cut(s)	717, 879, 893
BtgI	CCRYGG	3 cut(s)	193, 435, 799
BtsCI	GGATG	2 cut(s)	382, 478
BtsIMutI	CAGTG	2 cut(s)	143, 498
Cac8I	GCNNGC	5 cut(s)	141, 154, 200, 760, 895
CaiI	CAGNNNCTG	2 cut(s)	670, 689
CfoI	GCGC	3 cut(s)	152, 663, 764
Cfr10I	RCCGGY	1 cut(s)	410
Cfr13I	GGNCC	2 cut(s)	715, 716
Csp6I	GTAC	2 cut(s)	28, 865
CspCI	CAANNNNNGTGG	2 cut(s)	147, 182
CviQI	GTAC	2 cut(s)	28, 865
DdeI	CTNAG	4 cut(s)	146, 770, 784, 812
DraIII	CACNNNGTG	2 cut(s)	100, 295
EaeI	YGGCCR	1 cut(s)	877
Eco130I	CCWWGG	3 cut(s)	193, 435, 799
Eco24I	GRGCYC	1 cut(s)	719
Eco57I	CTGAAG	1 cut(s)	89
Eco91I	GGTNACC	2 cut(s)	430, 733
EcoO109I	RGGNCCY	1 cut(s)	715
EcoO65I	GGTNACC	2 cut(s)	430, 733
EcoRI	GAATTC	2 cut(s)	241, 544
EcoRII	CCWGG	1 cut(s)	663
EcoT14I	CCWWGG	3 cut(s)	193, 435, 799
EcoT38I	GRGCYC	1 cut(s)	719
ErhI	CCWWGG	3 cut(s)	193, 435, 799
FaqI	GGGAC	2 cut(s)	287, 681
FauI	CCCGC	1 cut(s)	144
Fnu4HI	GCNGC	5 cut(s)	408, 588, 596, 747, 877
FokI	GGATG	2 cut(s)	389, 485
FriOI	GRGCYC	1 cut(s)	719
Fsp4HI	GCNGC	5 cut(s)	408, 588, 596, 747, 877
FspBI	CTAG	4 cut(s)	54, 336, 675, 824
FspI	TGCGCA	1 cut(s)	763
GlaI	GCGC	3 cut(s)	151, 662, 763
GluI	GCNGC	5 cut(s)	408, 588, 596, 747, 877
GsaI	CCCAGC	1 cut(s)	63
HaeIII	GGCC	3 cut(s)	717, 879, 893
HapII	CCGG	1 cut(s)	411
HhaI	GCGC	3 cut(s)	152, 663, 764
Hin6I	GCGC	3 cut(s)	150, 661, 762
HinP1I	GCGC	3 cut(s)	150, 661, 762
HinfI	GANTC	4 cut(s)	250, 512, 519, 776
HpaII	CCGG	1 cut(s)	411
HphI	GGTGA	3 cut(s)	442, 553, 710
Hpy166II	GTNNAC	3 cut(s)	94, 129, 333
Hpy188III	TCNNGA	3 cut(s)	397, 516, 523
Hpy8I	GTNNAC	3 cut(s)	94, 129, 333
HpyAV	CCTTC	3 cut(s)	173, 463, 821
HpyCH4III	ACNGT	2 cut(s)	166, 493
HpyCH4V	TGCA	5 cut(s)	143, 263, 461, 749, 897
HpyF10VI	GCNNNNNNNGC	4 cut(s)	149, 584, 680, 755
HpyF3I	CTNAG	4 cut(s)	146, 770, 784, 812
HspAI	GCGC	3 cut(s)	150, 661, 762
LmnI	GCTCC	2 cut(s)	195, 575
Lsp1109I	GCAGC	2 cut(s)	394, 733
LweI	GCATC	2 cut(s)	367, 574
MaeI	CTAG	4 cut(s)	54, 336, 675, 824
MaeIII	GTNAC	4 cut(s)	47, 68, 430, 733
MboII	GAAGA	1 cut(s)	220
MfeI	CAATTG	1 cut(s)	922
MhlI	GDGCHC	2 cut(s)	158, 719
MluCI	AATT	8 cut(s)	31, 241, 424, 544, 652, 750, 900, 922
MlyI	GAGTC	2 cut(s)	513, 521
MnlI	CCTC	3 cut(s)	67, 354, 908
MroXI	GAANNNNTTC	1 cut(s)	183
MslI	CAYNNNNRTG	3 cut(s)	258, 804, 866
MspI	CCGG	1 cut(s)	411
MspR9I	CCNGG	1 cut(s)	665
MunI	CAATTG	1 cut(s)	922
MvaI	CCWGG	1 cut(s)	665
MvnI	CGCG	1 cut(s)	152
MwoI	GCNNNNNNNGC	4 cut(s)	149, 584, 680, 755
NcoI	CCATGG	3 cut(s)	193, 435, 799
NlaIV	GGNNCC	1 cut(s)	717
NmuCI	GTSAC	2 cut(s)	68, 430
NsbI	TGCGCA	1 cut(s)	763
NspI	RCATGY	1 cut(s)	865
PciI	ACATGT	1 cut(s)	861
PdmI	GAANNNNTTC	1 cut(s)	183
PfeI	GAWTC	2 cut(s)	250, 776
PflMI	CCANNNNNTGG	1 cut(s)	670
PkrI	GCNGC	5 cut(s)	409, 589, 597, 748, 878
PleI	GAGTC	2 cut(s)	513, 520
PpsI	GAGTC	2 cut(s)	513, 520
PscI	ACATGT	1 cut(s)	861
Psp6I	CCWGG	1 cut(s)	663
PspEI	GGTNACC	2 cut(s)	430, 733
PspFI	CCCAGC	1 cut(s)	59
PspGI	CCWGG	1 cut(s)	663
PspN4I	GGNNCC	1 cut(s)	717
PspOMI	GGGCCC	1 cut(s)	715
PspPI	GGNCC	2 cut(s)	715, 716
PstNI	CAGNNNCTG	2 cut(s)	670, 689
RsaI	GTAC	2 cut(s)	29, 866
RsaNI	GTAC	2 cut(s)	28, 865
RseI	CAYNNNNRTG	3 cut(s)	258, 804, 866
SatI	GCNGC	5 cut(s)	408, 588, 596, 747, 877
Sau96I	GGNCC	2 cut(s)	715, 716
SchI	GAGTC	2 cut(s)	513, 521
ScrFI	CCNGG	1 cut(s)	665
SduI	GDGCHC	2 cut(s)	158, 719
SetI	ASST	7 cut(s)	192, 297, 580, 735, 760, 790, 832
SfaNI	GCATC	2 cut(s)	367, 574
SmiMI	CAYNNNNRTG	3 cut(s)	258, 804, 866
SmlI	CTYRAG	2 cut(s)	311, 521
SmoI	CTYRAG	2 cut(s)	311, 521
SpeI	ACTAGT	1 cut(s)	335
Sse9I	AATT	8 cut(s)	31, 241, 424, 544, 652, 750, 900, 922
SsiI	CCGC	4 cut(s)	137, 588, 595, 876
SspMI	CTAG	4 cut(s)	54, 336, 675, 824
StyD4I	CCNGG	1 cut(s)	663
StyI	CCWWGG	3 cut(s)	193, 435, 799
TaaI	ACNGT	2 cut(s)	166, 493
TaqI	TCGA	2 cut(s)	341, 396
TasI	AATT	8 cut(s)	31, 241, 424, 544, 652, 750, 900, 922
TatI	WGTACW	2 cut(s)	27, 864
TauI	GCSGC	3 cut(s)	590, 598, 879
TfiI	GAWTC	2 cut(s)	250, 776
TscAI	CASTG	2 cut(s)	150, 498
TseFI	GTSAC	2 cut(s)	68, 430
TseI	GCWGC	2 cut(s)	407, 746
Tsp45I	GTSAC	2 cut(s)	68, 430
TspDTI	ATGAA	6 cut(s)	13, 242, 318, 581, 621, 884
TspRI	CASTG	2 cut(s)	150, 498
Van91I	CCANNNNNTGG	1 cut(s)	670
XapI	RAATTY	2 cut(s)	241, 544
XceI	RCATGY	1 cut(s)	865
XmnI	GAANNNNTTC	1 cut(s)	183
XspI	CTAG	4 cut(s)	54, 336, 675, 824

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.