Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015619

Physical Location & Seq

Genomic Coordinates Forward (+)

13312559 .. 13316844

Gene Structure 4286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17483

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1713 bp

ATGACTCAACCACTCTCTCTCATGGTTTGTGGAAGACGACGATCCTCCTCGGATCTCAGTCGCCGCGATGAAATAGAGGACAACAATCCAAGCATATCGCAGCTGGTCTCGGCGCTGCGGGACGCGTTTCAGGAGGCCGAGTTCGACAGAATCGAAGCGGCCTTAGTCGCCAGAGAGGCCGACCTGAAGCGGCGGAACGAGATTCTGAAGGAGAAGGTCGAGTTGGGCCTGCTGGACCGGCTCAAACTGGCCCAAGATCTCGAGGCTCTGAAGGAGAGTAGGCCGCCGGAGAAGGTGAAGGAGGAGGACAAAGAGGTAATTTCGCAGCTGCGGAGGAAGAACAATCGATTAGAGATGGAAAAATCGAGGCTTGATCGTGAGTATGAGGCGCTGGAGAGCCGAATTTTGGGTTTAGAGGATGATACTACGAAATTGGTGAATGAAATGCTTCTGGGTTCAGGTAGAAATGAAGGAACGATTATGAGAGACAATGGCGGTGTTTTAAATTTGGAGAATGTGTTTGAGTGTTTGATTGAGAATCAGGCAAACGGAAATCTGCAAATTTCAGGGGAAGCAAAGCTAGACCGAGTGATTGAGAAACAGAGGGAGGAGTATGCAACACTTGAGAAAAGGCATAAGTTTGAGATGGAGAAAATGCTAAAAGTTGAGAATGAGTTTGCAGCCCTCAAGAGAAAACACCAGCTTCAGCTGGAGGAAAAAGACAAGGTTGAGAATGAGCTGAAGGCTTGCCGGGTAGAGATTGAGGGGCTCAAAGTTGAGAATGAGGTGAAGAAGTTGAAGGAAGTGCTAAAGGCAGTCGAGGAAAATCATAAGAGCGAGTATAAAGCACTCGAGCAAAAGCACCAATCTCACCTTCTGGAAGTTGAGAATGAGTTAAAGCGCTGCAAAGCCGAGCTTCAGGGATTAAAGGAGGAGCAAAGTACCTCAGATGAGAAGTATCAGCAGCTTCTGGAGGAGGTGAATAAGCACAGGAAAGAGGAGGATGAAGTGGTCAATTTCGATCCCCAAAGGCAGAGCAAGGAGGTGGAGAGTGAGCCTAATGTGGTATTGGAGGACGAAATCTCTCGGTTAGATAAGTTTAGGAATGCAAAGCATCTTGGTTCAAAAAACATGGATAAGAGAAGCAAAAATAGTGGAATGCCAGATGGTAGTAGAAAACAGAAGTGTATTGTAACCCCTAACCATGTCATAAATGTAGAGAATGATTTTTGTGGTTCTGTGCCAGCGAGTACTTCCCCTCGAGGAAACAGTGTTCGAAATTCAGGTACTTCTAAATCTTCAAATGCAGACACCATTCTGCTTAGCGATAGCGATGATGATTGTGCTCCTGCAAAACAGAAAAATTTTGGGCTCAAAAGAAAACGAGCTTCATCTCCAAATGCTAGTAACAATAACAATGGTGGTCACAATTTCAAACGAGAGAGTTTCCCGACCTCTGAGAATAAGCAAAGCTGGATGCTGGGCCGTTGTGACTCTCTAGTTGGTGGCTATGGAATACAAAATAACCCACCGAATCGTGACCAAGAGACCTTAAGACCATCTGAAGAAAAAGTAGGGGAACAGAAACCTCCTGCAAAGGTGAATGGCGAGTCTGATTCCAGTTCTGCATCTATGTTCAGTTCTGATGATTCGGAGGATGACGATGACATCAATCTTGACTCAATGATGCTGTTCACAACAAACAGATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

570

Amino Acids

64.9

Weight (kDa)

5.37

Isoelectric Point (pI)

59.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015619)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g04040 FvH4_5g04040 FvH4_5g04040
rosa_chinensis	RchiOBHm_Chr7g0195481
rosa_laevigata	RLG00000004117
rosa_multiflora	Rmu_sc0013420.1_g000004 Rmu_sc0019107.1_g000002
rosa_roxburghii	Rroxscaffold_3G00260440
rosa_rugosa	Rorug07G0023700 Rorug07G0023700 Rorug07G0023800
rosa_samantha	Rh7AG151100 Rh7BG152800 Rh7CG156300 Rh7DG152100
rosa_wichuraiana	Rw7G012900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	1260
AccII	CGCG	2 cut(s)	66, 125
AciI	CCGC	8 cut(s)	64, 118, 158, 190, 193, 284, 331, 495
AclWI	GGATC	3 cut(s)	36, 60, 1016
AcsI	RAATTY	5 cut(s)	402, 505, 561, 1279, 1363
AcuI	CTGAAG	7 cut(s)	206, 227, 290, 689, 761, 902, 1584
AfaI	GTAC	3 cut(s)	943, 1252, 1288
AfeI	AGCGCT	1 cut(s)	902
AfiI	CCNNNNNNNGG	1 cut(s)	406
AflII	CTTAAG	1 cut(s)	1552
AflIII	ACRYGT	1 cut(s)	123
AgsI	TTSAA	4 cut(s)	799, 1125, 1302, 1435
AjuI	GAANNNNNNNTTGG	4 cut(s)	206, 238, 858, 890
AloI	GAACNNNNNNTCC	4 cut(s)	125, 157, 1257, 1289
Alw21I	GWGCWC	1 cut(s)	1348
Alw26I	GTCTC	3 cut(s)	112, 480, 1541
AlwI	GGATC	3 cut(s)	36, 60, 1016
AlwNI	CAGNNNCTG	1 cut(s)	970
Ama87I	CYCGRG	3 cut(s)	260, 851, 1260
Aor51HI	AGCGCT	1 cut(s)	902
AoxI	GGCC	7 cut(s)	135, 159, 177, 226, 249, 281, 1483
ApeKI	GCWGC	7 cut(s)	100, 115, 325, 328, 680, 903, 964
ApoI	RAATTY	5 cut(s)	402, 505, 561, 1279, 1363
Asp700I	GAANNNNTTC	1 cut(s)	447
AspLEI	GCGC	3 cut(s)	115, 391, 903
AspS9I	GGNCC	4 cut(s)	226, 235, 250, 1483
AsuC2I	CCSGG	1 cut(s)	752
AsuHPI	GGTGA	6 cut(s)	307, 448, 799, 863, 991, 1612
AsuII	TTCGAA	1 cut(s)	1276
AvaI	CYCGRG	3 cut(s)	260, 851, 1260
AvaII	GGWCC	1 cut(s)	235
BanII	GRGCYC	2 cut(s)	771, 1374
BbsI	GAAGAC	1 cut(s)	40
Bbv12I	GWGCWC	1 cut(s)	1348
BbvI	GCAGC	7 cut(s)	102, 112, 315, 337, 692, 890, 976
BccI	CCATC	4 cut(s)	349, 640, 1160, 1567
BceAI	ACGGC	1 cut(s)	1470
BcnI	CCSGG	1 cut(s)	752
BcoDI	GTCTC	3 cut(s)	112, 480, 1541
BfaI	CTAG	3 cut(s)	581, 1404, 1499
BfoI	RGCGCY	3 cut(s)	116, 392, 904
BfrI	CTTAAG	1 cut(s)	1552
BglI	GCCNNNNNGGC	1 cut(s)	176
BglII	AGATCT	1 cut(s)	256
BlpI	GCTNAGC	1 cut(s)	1322
BmcAI	AGTACT	1 cut(s)	1252
Bme1390I	CCNGG	1 cut(s)	752
Bme18I	GGWCC	1 cut(s)	235
BmeT110I	CYCGRG	3 cut(s)	260, 851, 1260
BmgT120I	GGNCC	4 cut(s)	226, 235, 250, 1483
BmrFI	CCNGG	1 cut(s)	752
BmsI	GCATC	4 cut(s)	1123, 1467, 1637, 1677
BpiI	GAAGAC	1 cut(s)	40
BpmI	CTGGAG	3 cut(s)	413, 731, 992
Bpu1102I	GCTNAGC	1 cut(s)	1322
Bpu14I	TTCGAA	1 cut(s)	1276
BpuEI	CTTGAG	2 cut(s)	644, 671
BpuMI	CCSGG	1 cut(s)	752
Bsa29I	ATCGAT	1 cut(s)	346
BsaI	GGTCTC	2 cut(s)	112, 1541
BsaJI	CCNNGG	1 cut(s)	48
BsaXI	ACNNNNNCTCC	4 cut(s)	125, 155, 503, 533
Bsc4I	CCNNNNNNNGG	1 cut(s)	406
Bse118I	RCCGGY	1 cut(s)	237
Bse1I	ACTGG	2 cut(s)	252, 1620
BseCI	ATCGAT	1 cut(s)	346
BseDI	CCNNGG	1 cut(s)	48
BseGI	GGATG	4 cut(s)	424, 1009, 1482, 1663
BseLI	CCNNNNNNNGG	1 cut(s)	406
BseMII	CTCAG	3 cut(s)	70, 960, 1449
BseNI	ACTGG	2 cut(s)	252, 1620
BseRI	GAGGAG	6 cut(s)	37, 317, 623, 947, 989, 1013
BseXI	GCAGC	7 cut(s)	102, 112, 315, 337, 692, 890, 976
BseYI	CCCAGC	1 cut(s)	1480
Bsh1236I	CGCG	2 cut(s)	66, 125
BshFI	GGCC	7 cut(s)	137, 161, 179, 228, 251, 283, 1485
BshVI	ATCGAT	1 cut(s)	346
BsiHKAI	GWGCWC	1 cut(s)	1348
BsiHKCI	CYCGRG	3 cut(s)	260, 851, 1260
BsiSI	CCGG	3 cut(s)	238, 287, 751
BslFI	GGGAC	1 cut(s)	134
BslI	CCNNNNNNNGG	1 cut(s)	406
BsmAI	GTCTC	3 cut(s)	112, 480, 1541
BsmFI	GGGAC	1 cut(s)	134
BsmI	GAATGC	2 cut(s)	1111, 1164
BsnI	GGCC	7 cut(s)	137, 161, 179, 228, 251, 283, 1485
Bso31I	GGTCTC	2 cut(s)	112, 1541
BsoBI	CYCGRG	3 cut(s)	260, 851, 1260
Bsp119I	TTCGAA	1 cut(s)	1276
Bsp1286I	GDGCHC	3 cut(s)	771, 1348, 1374
Bsp143I	GATC	6 cut(s)	41, 52, 256, 373, 1021, 1706
Bsp1720I	GCTNAGC	1 cut(s)	1322
BspACI	CCGC	8 cut(s)	64, 118, 158, 190, 193, 284, 331, 495
BspANI	GGCC	7 cut(s)	137, 161, 179, 228, 251, 283, 1485
BspCNI	CTCAG	3 cut(s)	69, 959, 1450
BspDI	ATCGAT	1 cut(s)	346
BspFNI	CGCG	2 cut(s)	66, 125
BspHI	TCATGA	1 cut(s)	1709
BspPI	GGATC	3 cut(s)	36, 60, 1016
BspT104I	TTCGAA	1 cut(s)	1276
BspTI	CTTAAG	1 cut(s)	1552
BspTNI	GGTCTC	2 cut(s)	112, 1541
BsrFI	RCCGGY	1 cut(s)	237
BsrI	ACTGG	2 cut(s)	252, 1620
BssAI	RCCGGY	1 cut(s)	237
BssECI	CCNNGG	1 cut(s)	48
BssMI	GATC	6 cut(s)	41, 52, 256, 373, 1021, 1706
Bst4CI	ACNGT	1 cut(s)	1271
BstAFI	CTTAAG	1 cut(s)	1552
BstBI	TTCGAA	1 cut(s)	1276
BstC8I	GCNNGC	3 cut(s)	230, 748, 1245
BstDEI	CTNAG	5 cut(s)	56, 163, 946, 1322, 1458
BstF5I	GGATG	4 cut(s)	424, 1009, 1482, 1663
BstFNI	CGCG	2 cut(s)	66, 125
BstH2I	RGCGCY	3 cut(s)	116, 392, 904
BstHHI	GCGC	3 cut(s)	115, 391, 903
BstKTI	GATC	6 cut(s)	44, 55, 259, 376, 1024, 1709
BstMAI	GTCTC	3 cut(s)	112, 480, 1541
BstMBI	GATC	6 cut(s)	41, 52, 256, 373, 1021, 1706
BstMWI	GCNNNNNNNGC	3 cut(s)	167, 176, 238
BstSCI	CCNGG	1 cut(s)	750
BstUI	CGCG	2 cut(s)	66, 125
BstV1I	GCAGC	7 cut(s)	102, 112, 315, 337, 692, 890, 976
BstV2I	GAAGAC	1 cut(s)	40
BstX2I	RGATCY	2 cut(s)	52, 256
BstYI	RGATCY	2 cut(s)	52, 256
Bsu15I	ATCGAT	1 cut(s)	346
BsuRI	GGCC	7 cut(s)	137, 161, 179, 228, 251, 283, 1485
BsuTUI	ATCGAT	1 cut(s)	346
BtgZI	GCGATG	2 cut(s)	81, 1347
BtsCI	GGATG	4 cut(s)	424, 1009, 1482, 1663
BtsIMutI	CAGTG	1 cut(s)	1276
Cac8I	GCNNGC	3 cut(s)	230, 748, 1245
CaiI	CAGNNNCTG	1 cut(s)	970
CciI	TCATGA	1 cut(s)	1709
CfoI	GCGC	3 cut(s)	115, 391, 903
Cfr10I	RCCGGY	1 cut(s)	237
Cfr13I	GGNCC	4 cut(s)	226, 235, 250, 1483
ClaI	ATCGAT	1 cut(s)	346
CseI	GACGC	1 cut(s)	131
Csp6I	GTAC	3 cut(s)	942, 1251, 1287
CspCI	CAANNNNNGTGG	2 cut(s)	1135, 1170
CviAII	CATG	4 cut(s)	22, 1132, 1205, 1710
CviQI	GTAC	3 cut(s)	942, 1251, 1287
DdeI	CTNAG	5 cut(s)	56, 163, 946, 1322, 1458
DpnI	GATC	6 cut(s)	43, 54, 258, 375, 1023, 1708
DpnII	GATC	6 cut(s)	41, 52, 256, 373, 1021, 1706
DraI	TTTAAA	1 cut(s)	504
EciI	GGCGGA	1 cut(s)	208
Eco24I	GRGCYC	2 cut(s)	771, 1374
Eco31I	GGTCTC	2 cut(s)	112, 1541
Eco47I	GGWCC	1 cut(s)	235
Eco47III	AGCGCT	1 cut(s)	902
Eco57I	CTGAAG	7 cut(s)	206, 227, 290, 689, 761, 902, 1584
Eco88I	CYCGRG	3 cut(s)	260, 851, 1260
EcoT38I	GRGCYC	2 cut(s)	771, 1374
FaeI	CATG	4 cut(s)	25, 1135, 1208, 1713
FalI	AAGNNNNNCTT	2 cut(s)	900, 932
FaqI	GGGAC	1 cut(s)	134
FatI	CATG	4 cut(s)	21, 1131, 1204, 1709
FauI	CCCGC	1 cut(s)	111
FokI	GGATG	4 cut(s)	431, 1016, 1489, 1670
FriOI	GRGCYC	2 cut(s)	771, 1374
FspBI	CTAG	3 cut(s)	581, 1404, 1499
GlaI	GCGC	3 cut(s)	114, 390, 902
GsaI	CCCAGC	1 cut(s)	1484
GsuI	CTGGAG	3 cut(s)	413, 731, 992
HaeII	RGCGCY	3 cut(s)	116, 392, 904
HaeIII	GGCC	7 cut(s)	137, 161, 179, 228, 251, 283, 1485
HapII	CCGG	3 cut(s)	238, 287, 751
HgaI	GACGC	1 cut(s)	131
HhaI	GCGC	3 cut(s)	115, 391, 903
Hin1II	CATG	4 cut(s)	25, 1135, 1208, 1713
Hin6I	GCGC	3 cut(s)	113, 389, 901
HinP1I	GCGC	3 cut(s)	113, 389, 901
HpaII	CCGG	3 cut(s)	238, 287, 751
HphI	GGTGA	6 cut(s)	307, 448, 799, 863, 991, 1612
Hpy166II	GTNNAC	1 cut(s)	1695
Hpy188I	TCNGA	9 cut(s)	52, 207, 270, 949, 1459, 1564, 1615, 1645, 1654
Hpy8I	GTNNAC	1 cut(s)	1695
Hpy99I	CGWCG	1 cut(s)	42
HpyAV	CCTTC	9 cut(s)	202, 208, 265, 286, 292, 464, 736, 793, 884
HpyCH4III	ACNGT	1 cut(s)	1271
HpyCH4V	TGCA	9 cut(s)	559, 617, 680, 906, 1109, 1307, 1352, 1595, 1628
HpyF10VI	GCNNNNNNNGC	3 cut(s)	167, 176, 238
HpyF3I	CTNAG	5 cut(s)	56, 163, 946, 1322, 1458
Hsp92II	CATG	4 cut(s)	25, 1135, 1208, 1713
HspAI	GCGC	3 cut(s)	113, 389, 901
Kzo9I	GATC	6 cut(s)	41, 52, 256, 373, 1021, 1706
LmnI	GCTCC	2 cut(s)	934, 1351
Lsp1109I	GCAGC	7 cut(s)	102, 112, 315, 337, 692, 890, 976
LweI	GCATC	4 cut(s)	1123, 1467, 1637, 1677
MaeI	CTAG	3 cut(s)	581, 1404, 1499
MaeIII	GTNAC	5 cut(s)	1192, 1406, 1424, 1490, 1538
MalI	GATC	6 cut(s)	43, 54, 258, 375, 1023, 1708
MboI	GATC	6 cut(s)	41, 52, 256, 373, 1021, 1706
MboII	GAAGA	5 cut(s)	45, 349, 802, 1290, 1577
MflI	RGATCY	2 cut(s)	52, 256
MhlI	GDGCHC	3 cut(s)	771, 1348, 1374
MluCI	AATT	9 cut(s)	318, 402, 431, 505, 561, 1015, 1279, 1363, 1429
MluI	ACGCGT	1 cut(s)	123
MlyI	GAGTC	3 cut(s)	1487, 1619, 1673
MroXI	GAANNNNTTC	1 cut(s)	447
MseI	TTAA	4 cut(s)	503, 896, 926, 1553
MspA1I	CMGCKG	3 cut(s)	103, 328, 709
MspCI	CTTAAG	1 cut(s)	1552
MspI	CCGG	3 cut(s)	238, 287, 751
MspR9I	CCNGG	1 cut(s)	752
Mva1269I	GAATGC	2 cut(s)	1111, 1164
MvnI	CGCG	2 cut(s)	66, 125
MwoI	GCNNNNNNNGC	3 cut(s)	167, 176, 238
NciI	CCSGG	1 cut(s)	752
NdeII	GATC	6 cut(s)	41, 52, 256, 373, 1021, 1706
NlaIII	CATG	4 cut(s)	25, 1135, 1208, 1713
NmeAIII	GCCGAG	3 cut(s)	89, 163, 937
NmuCI	GTSAC	3 cut(s)	1424, 1490, 1538
NspV	TTCGAA	1 cut(s)	1276
PaeR7I	CTCGAG	3 cut(s)	260, 851, 1260
PagI	TCATGA	1 cut(s)	1709
PcsI	WCGNNNNNNNCGW	1 cut(s)	150
PctI	GAATGC	2 cut(s)	1111, 1164
PdmI	GAANNNNTTC	1 cut(s)	447
PfeI	GAWTC	6 cut(s)	150, 202, 538, 1534, 1616, 1649
PleI	GAGTC	3 cut(s)	1487, 1618, 1673
PpsI	GAGTC	3 cut(s)	1487, 1618, 1673
PspFI	CCCAGC	1 cut(s)	1480
PspPI	GGNCC	4 cut(s)	226, 235, 250, 1483
PspXI	VCTCGAGB	2 cut(s)	851, 1260
PstNI	CAGNNNCTG	1 cut(s)	970
PsuI	RGATCY	2 cut(s)	52, 256
PvuII	CAGCTG	3 cut(s)	103, 328, 709
RsaI	GTAC	3 cut(s)	943, 1252, 1288
RsaNI	GTAC	3 cut(s)	942, 1251, 1287
SaqAI	TTAA	4 cut(s)	503, 896, 926, 1553
Sau3AI	GATC	6 cut(s)	41, 52, 256, 373, 1021, 1706
Sau96I	GGNCC	4 cut(s)	226, 235, 250, 1483
ScaI	AGTACT	1 cut(s)	1252
SchI	GAGTC	3 cut(s)	1487, 1619, 1673
ScrFI	CCNGG	1 cut(s)	752
SduI	GDGCHC	3 cut(s)	771, 1348, 1374
SfaNI	GCATC	4 cut(s)	1123, 1467, 1637, 1677
Sfr274I	CTCGAG	3 cut(s)	260, 851, 1260
SfuI	TTCGAA	1 cut(s)	1276
SinI	GGWCC	1 cut(s)	235
SlaI	CTCGAG	3 cut(s)	260, 851, 1260
SmlI	CTYRAG	6 cut(s)	260, 623, 686, 851, 1260, 1552
SmoI	CTYRAG	6 cut(s)	260, 623, 686, 851, 1260, 1552
Sse9I	AATT	9 cut(s)	318, 402, 431, 505, 561, 1015, 1279, 1363, 1429
SsiI	CCGC	8 cut(s)	64, 118, 158, 190, 193, 284, 331, 495
SspMI	CTAG	3 cut(s)	581, 1404, 1499
StyD4I	CCNGG	1 cut(s)	750
TaaI	ACNGT	1 cut(s)	1271
TaqII	GACCGA	1 cut(s)	600
TasI	AATT	9 cut(s)	318, 402, 431, 505, 561, 1015, 1279, 1363, 1429
TatI	WGTACW	1 cut(s)	1250
TauI	GCSGC	4 cut(s)	66, 161, 193, 286
TfiI	GAWTC	6 cut(s)	150, 202, 538, 1534, 1616, 1649
Tru1I	TTAA	4 cut(s)	503, 896, 926, 1553
Tru9I	TTAA	4 cut(s)	503, 896, 926, 1553
TscAI	CASTG	1 cut(s)	1276
TseFI	GTSAC	3 cut(s)	1424, 1490, 1538
TseI	GCWGC	7 cut(s)	100, 115, 325, 328, 680, 903, 964
Tsp45I	GTSAC	3 cut(s)	1424, 1490, 1538
TspDTI	ATGAA	5 cut(s)	84, 456, 483, 1020, 1380
TspGWI	ACGGA	1 cut(s)	564
TspRI	CASTG	1 cut(s)	1276
Vha464I	CTTAAG	1 cut(s)	1552
VpaK11BI	GGWCC	1 cut(s)	235
XapI	RAATTY	5 cut(s)	402, 505, 561, 1279, 1363
XhoI	CTCGAG	3 cut(s)	260, 851, 1260
XmnI	GAANNNNTTC	1 cut(s)	447
XspI	CTAG	3 cut(s)	581, 1404, 1499
ZrmI	AGTACT	1 cut(s)	1252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.