Rh7DG152100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0015619
Physical Location & Seq
Forward (+)
13105970 .. 13108752
2783 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG152100.1

Sequence Viewer

Length: 1713 bp
ATGACTCAACCACTCTCTCTCATGGTTTGTGGAAGACGACGATCCTCCTCCGATCTCAGTCGCCGCGATGAAATAGAGGACAACAATCCAAGCATATCGCAGCTGGTCTCGGCGCTGCGGGACGCGTTTCAGGAGGCCGAGTTCGACAGAATCGAAGCGGCCTTAGTCACCAGAGAGGCCGACCTGAAGCGGCGGAACCAGAGTTTGAAGGAGAAGGTCGAGTTGGGCCTGCTGGACCGGCTCAAACTGGCCCAAGATCTCGAGGCTCTGAAGGAGAGTAGGCCGCCGGAGAAGGTGAAGGAGGAGGACAAAGAGGTAATTTCGCAGCTGCGGAGGAAGAACAATCGATTAGAGATGGAAAAATCGAGGCTTGATCGTGAGTATGAGGCTCTGGAGAGCCGAATTTTGGGTTTAGAGGATGATACTACGAAATTGGTGAATGAAATGCTTCTGGGTTCAGGTAGAAATGAAGGAACGATTATGAGAGACAATGGCGGTGTTTTAAATTTGGAGAATGTGTTTGAGTGTTTGATTGAGAATCAGGCAAACGGAAATCTGCAAATTTCAGCGGAAGCAAAGCTAGACCGAGTGATTGAGAAACAGAGGGAGGAGTATGCAACACTTGAGAAAAGGCATAAGTTTGAGATGGAGAAAATGCTAAAAGTTGAGAATGAGTTTGCAGACCTCAAGAGAAAACACCAGCTTCAGCTGGAGGAAAAAGTCAAGGTTGAGAATGAGCTGAAGGCTTGCCGGGTAGAGATTGAGGGGCTCAAAGTTGAGAATGAGGTGAAGAAGTTGAAGGAAGTGCTAAAGGCAGTCGAGGAAAATCATAAGAGCGAGTATAAAGCACTCGAGCAAAAGCACCAATCTCACCTTCTGGGAGTTGAGAATGAGTTAAGGCACTGCAAAGCCGAGCTTCAGGGAATAAAGGAGGAGCTAAGTACCTCAGATGAGAAGTATGAGAAGCTTCTGGAGGAGGTGAATAAGCACAGGAAAGAGGAGGATGAAGTGGTCAATTTCGATCCCCAAAGGCAGAGCAAGGAGGTGGAGAGTGAGCCTGATGTGGTATTGGAGGACGAAATCTCTCGGTTAGATAAGTTTAGGAATGCAAAGCATCTTGGTTCAAAAAACATGGATAAGAGAAGCAAAAATAGTGGAATGCCAGATGGTAGTAGAAAACAGAAGTGTATTGTAACCCCTAACCATGTCATAAATGTAGAGAATGATTTTTGTGGTTCTGTGCCAGCGAGTACTTCCCCTCGAGGAAACAGTGTTCGAAATTCAGGTACTTCTAAATCTTCAAATGCAGACACCATTCTGCTTAGCGATAGCGATGATGATTGTGCTCCTGCAAAACAGAAAAATTTTGGGCTCAAAAGAAAACGAGCTTCATCTCCAAATGCTAGTAACAATAACAATGGTGGTCACAATTTCAAACGAGAGAGTTTCCCGACCTCTGAGAATAAGCAAAGCCGGATGCTGGGCCGTTGTGACTCTCTAGTTGGTGGCTATGGAATACAAAATAACCCACCGAATCGTGACCAAGAGACCTTAAGACCATCTGAAGAAAAAGTAGGGGAACAGAAACCTCCTGCAAAGGTGAATGGCGAGTCTGATTCCAGTTCTGCATCTATGTTCAGTTCTGATGATTCGGAGGATGACGATGACATCAATCTTGACTCAATGATGCTGTTCACAACAAACAGATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

570

Amino Acids

64.84

Weight (kDa)

5.44

Isoelectric Point (pI)

57.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 1260
AccII CGCG 2 cut(s) 66, 125
AciI CCGC 9 cut(s) 64, 118, 158, 190, 193, 284, 331, 495, 569
AclWI GGATC 2 cut(s) 36, 1016
AcsI RAATTY 5 cut(s) 402, 505, 561, 1279, 1363
AcuI CTGAAG 6 cut(s) 206, 290, 689, 761, 902, 1584
AfaI GTAC 3 cut(s) 943, 1252, 1288
AfiI CCNNNNNNNGG 2 cut(s) 406, 1480
AflII CTTAAG 1 cut(s) 1552
AflIII ACRYGT 1 cut(s) 123
AgsI TTSAA 5 cut(s) 208, 799, 1125, 1302, 1435
AjuI GAANNNNNNNTTGG 4 cut(s) 206, 238, 858, 890
AloI GAACNNNNNNTCC 4 cut(s) 125, 157, 1257, 1289
Alw21I GWGCWC 1 cut(s) 1348
Alw26I GTCTC 3 cut(s) 112, 480, 1541
AlwI GGATC 2 cut(s) 36, 1016
Ama87I CYCGRG 3 cut(s) 260, 851, 1260
AoxI GGCC 7 cut(s) 135, 159, 177, 226, 249, 281, 1483
ApeKI GCWGC 4 cut(s) 100, 115, 325, 328
ApoI RAATTY 5 cut(s) 402, 505, 561, 1279, 1363
Asp700I GAANNNNTTC 1 cut(s) 447
AspLEI GCGC 1 cut(s) 115
AspS9I GGNCC 4 cut(s) 226, 235, 250, 1483
AsuC2I CCSGG 1 cut(s) 752
AsuHPI GGTGA 7 cut(s) 160, 307, 448, 799, 863, 991, 1612
AsuII TTCGAA 1 cut(s) 1276
AvaI CYCGRG 3 cut(s) 260, 851, 1260
AvaII GGWCC 1 cut(s) 235
BanII GRGCYC 2 cut(s) 771, 1374
BbsI GAAGAC 1 cut(s) 40
Bbv12I GWGCWC 1 cut(s) 1348
BbvI GCAGC 4 cut(s) 102, 112, 315, 337
BccI CCATC 4 cut(s) 349, 640, 1160, 1567
BceAI ACGGC 1 cut(s) 1470
BcnI CCSGG 1 cut(s) 752
BcoDI GTCTC 3 cut(s) 112, 480, 1541
BfaI CTAG 3 cut(s) 581, 1404, 1499
BfoI RGCGCY 1 cut(s) 116
BfrI CTTAAG 1 cut(s) 1552
BglII AGATCT 1 cut(s) 256
BisI GCNGC 8 cut(s) 64, 101, 116, 159, 191, 284, 326, 329
BlpI GCTNAGC 1 cut(s) 1322
BlsI GCNGC 8 cut(s) 65, 102, 117, 160, 192, 285, 327, 330
BmcAI AGTACT 1 cut(s) 1252
Bme1390I CCNGG 1 cut(s) 752
Bme18I GGWCC 1 cut(s) 235
BmeT110I CYCGRG 3 cut(s) 260, 851, 1260
BmgT120I GGNCC 4 cut(s) 226, 235, 250, 1483
BmiI GGNNCC 1 cut(s) 197
BmrFI CCNGG 1 cut(s) 752
BmsI GCATC 4 cut(s) 1123, 1467, 1637, 1677
BpiI GAAGAC 1 cut(s) 40
BpmI CTGGAG 3 cut(s) 413, 731, 992
Bpu1102I GCTNAGC 1 cut(s) 1322
Bpu14I TTCGAA 1 cut(s) 1276
BpuEI CTTGAG 2 cut(s) 644, 671
BpuMI CCSGG 1 cut(s) 752
Bsa29I ATCGAT 1 cut(s) 346
BsaI GGTCTC 2 cut(s) 112, 1541
BsaXI ACNNNNNCTCC 4 cut(s) 125, 155, 503, 533
Bsc4I CCNNNNNNNGG 2 cut(s) 406, 1480
Bse118I RCCGGY 1 cut(s) 237
Bse1I ACTGG 2 cut(s) 252, 1620
BseCI ATCGAT 1 cut(s) 346
BseGI GGATG 4 cut(s) 424, 1009, 1482, 1663
BseLI CCNNNNNNNGG 2 cut(s) 406, 1480
BseMII CTCAG 3 cut(s) 70, 960, 1449
BseNI ACTGG 2 cut(s) 252, 1620
BseRI GAGGAG 6 cut(s) 37, 317, 623, 947, 989, 1013
BseXI GCAGC 4 cut(s) 102, 112, 315, 337
BseYI CCCAGC 1 cut(s) 1480
Bsh1236I CGCG 2 cut(s) 66, 125
BshFI GGCC 7 cut(s) 137, 161, 179, 228, 251, 283, 1485
BshVI ATCGAT 1 cut(s) 346
BsiHKAI GWGCWC 1 cut(s) 1348
BsiHKCI CYCGRG 3 cut(s) 260, 851, 1260
BsiSI CCGG 4 cut(s) 238, 287, 751, 1474
BslFI GGGAC 1 cut(s) 134
BslI CCNNNNNNNGG 2 cut(s) 406, 1480
BsmAI GTCTC 3 cut(s) 112, 480, 1541
BsmFI GGGAC 1 cut(s) 134
BsmI GAATGC 2 cut(s) 1111, 1164
BsnI GGCC 7 cut(s) 137, 161, 179, 228, 251, 283, 1485
Bso31I GGTCTC 2 cut(s) 112, 1541
BsoBI CYCGRG 3 cut(s) 260, 851, 1260
Bsp119I TTCGAA 1 cut(s) 1276
Bsp1286I GDGCHC 3 cut(s) 771, 1348, 1374
Bsp143I GATC 6 cut(s) 41, 52, 256, 373, 1021, 1706
Bsp1720I GCTNAGC 1 cut(s) 1322
BspACI CCGC 9 cut(s) 64, 118, 158, 190, 193, 284, 331, 495, 569
BspANI GGCC 7 cut(s) 137, 161, 179, 228, 251, 283, 1485
BspCNI CTCAG 3 cut(s) 69, 959, 1450
BspDI ATCGAT 1 cut(s) 346
BspFNI CGCG 2 cut(s) 66, 125
BspHI TCATGA 1 cut(s) 1709
BspLI GGNNCC 1 cut(s) 197
BspPI GGATC 2 cut(s) 36, 1016
BspT104I TTCGAA 1 cut(s) 1276
BspTI CTTAAG 1 cut(s) 1552
BspTNI GGTCTC 2 cut(s) 112, 1541
BsrFI RCCGGY 1 cut(s) 237
BsrI ACTGG 2 cut(s) 252, 1620
BssAI RCCGGY 1 cut(s) 237
BssMI GATC 6 cut(s) 41, 52, 256, 373, 1021, 1706
Bst4CI ACNGT 1 cut(s) 1271
BstAFI CTTAAG 1 cut(s) 1552
BstBI TTCGAA 1 cut(s) 1276
BstC8I GCNNGC 3 cut(s) 230, 748, 1245
BstDEI CTNAG 6 cut(s) 56, 163, 938, 946, 1322, 1458
BstF5I GGATG 4 cut(s) 424, 1009, 1482, 1663
BstFNI CGCG 2 cut(s) 66, 125
BstH2I RGCGCY 1 cut(s) 116
BstHHI GCGC 1 cut(s) 115
BstKTI GATC 6 cut(s) 44, 55, 259, 376, 1024, 1709
BstMAI GTCTC 3 cut(s) 112, 480, 1541
BstMBI GATC 6 cut(s) 41, 52, 256, 373, 1021, 1706
BstMWI GCNNNNNNNGC 1 cut(s) 238
BstSCI CCNGG 1 cut(s) 750
BstUI CGCG 2 cut(s) 66, 125
BstV1I GCAGC 4 cut(s) 102, 112, 315, 337
BstV2I GAAGAC 1 cut(s) 40
BstX2I RGATCY 1 cut(s) 256
BstYI RGATCY 1 cut(s) 256
Bsu15I ATCGAT 1 cut(s) 346
BsuRI GGCC 7 cut(s) 137, 161, 179, 228, 251, 283, 1485
BsuTUI ATCGAT 1 cut(s) 346
BtgZI GCGATG 2 cut(s) 81, 1347
BtsCI GGATG 4 cut(s) 424, 1009, 1482, 1663
BtsI GCAGTG 1 cut(s) 901
BtsIMutI CAGTG 2 cut(s) 901, 1276
Cac8I GCNNGC 3 cut(s) 230, 748, 1245
CciI TCATGA 1 cut(s) 1709
CfoI GCGC 1 cut(s) 115
Cfr10I RCCGGY 1 cut(s) 237
Cfr13I GGNCC 4 cut(s) 226, 235, 250, 1483
ClaI ATCGAT 1 cut(s) 346
CseI GACGC 1 cut(s) 131
Csp6I GTAC 3 cut(s) 942, 1251, 1287
CspCI CAANNNNNGTGG 2 cut(s) 1135, 1170
CviAII CATG 4 cut(s) 22, 1132, 1205, 1710
CviQI GTAC 3 cut(s) 942, 1251, 1287
DdeI CTNAG 6 cut(s) 56, 163, 938, 946, 1322, 1458
DpnI GATC 6 cut(s) 43, 54, 258, 375, 1023, 1708
DpnII GATC 6 cut(s) 41, 52, 256, 373, 1021, 1706
DraI TTTAAA 1 cut(s) 504
EciI GGCGGA 1 cut(s) 208
Eco24I GRGCYC 2 cut(s) 771, 1374
Eco31I GGTCTC 2 cut(s) 112, 1541
Eco47I GGWCC 1 cut(s) 235
Eco57I CTGAAG 6 cut(s) 206, 290, 689, 761, 902, 1584
Eco88I CYCGRG 3 cut(s) 260, 851, 1260
EcoT38I GRGCYC 2 cut(s) 771, 1374
FaeI CATG 4 cut(s) 25, 1135, 1208, 1713
FalI AAGNNNNNCTT 2 cut(s) 900, 932
FaqI GGGAC 1 cut(s) 134
FatI CATG 4 cut(s) 21, 1131, 1204, 1709
FauI CCCGC 1 cut(s) 111
Fnu4HI GCNGC 8 cut(s) 64, 101, 116, 159, 191, 284, 326, 329
FokI GGATG 4 cut(s) 431, 1016, 1489, 1670
FriOI GRGCYC 2 cut(s) 771, 1374
Fsp4HI GCNGC 8 cut(s) 64, 101, 116, 159, 191, 284, 326, 329
FspBI CTAG 3 cut(s) 581, 1404, 1499
GlaI GCGC 1 cut(s) 114
GluI GCNGC 8 cut(s) 64, 101, 116, 159, 191, 284, 326, 329
GsaI CCCAGC 1 cut(s) 1484
GsuI CTGGAG 3 cut(s) 413, 731, 992
HaeII RGCGCY 1 cut(s) 116
HaeIII GGCC 7 cut(s) 137, 161, 179, 228, 251, 283, 1485
HapII CCGG 4 cut(s) 238, 287, 751, 1474
HgaI GACGC 1 cut(s) 131
HhaI GCGC 1 cut(s) 115
Hin1II CATG 4 cut(s) 25, 1135, 1208, 1713
Hin6I GCGC 1 cut(s) 113
HinP1I GCGC 1 cut(s) 113
HindIII AAGCTT 1 cut(s) 965
HinfI GANTC 9 cut(s) 4, 150, 538, 1493, 1534, 1610, 1616, 1649, 1679
HpaII CCGG 4 cut(s) 238, 287, 751, 1474
HphI GGTGA 7 cut(s) 160, 307, 448, 799, 863, 991, 1612
Hpy166II GTNNAC 1 cut(s) 1695
Hpy188I TCNGA 8 cut(s) 52, 270, 949, 1459, 1564, 1615, 1645, 1654
Hpy8I GTNNAC 1 cut(s) 1695
Hpy99I CGWCG 1 cut(s) 42
HpyAV CCTTC 9 cut(s) 202, 208, 265, 286, 292, 464, 736, 793, 884
HpyCH4III ACNGT 1 cut(s) 1271
HpyCH4V TGCA 9 cut(s) 559, 617, 680, 906, 1109, 1307, 1352, 1595, 1628
HpyF10VI GCNNNNNNNGC 1 cut(s) 238
HpyF3I CTNAG 6 cut(s) 56, 163, 938, 946, 1322, 1458
Hsp92II CATG 4 cut(s) 25, 1135, 1208, 1713
HspAI GCGC 1 cut(s) 113
Kzo9I GATC 6 cut(s) 41, 52, 256, 373, 1021, 1706
LmnI GCTCC 2 cut(s) 934, 1351
Lsp1109I GCAGC 4 cut(s) 102, 112, 315, 337
LweI GCATC 4 cut(s) 1123, 1467, 1637, 1677
MaeI CTAG 3 cut(s) 581, 1404, 1499
MaeIII GTNAC 6 cut(s) 166, 1192, 1406, 1424, 1490, 1538
MalI GATC 6 cut(s) 43, 54, 258, 375, 1023, 1708
MboI GATC 6 cut(s) 41, 52, 256, 373, 1021, 1706
MboII GAAGA 5 cut(s) 45, 349, 802, 1290, 1577
MflI RGATCY 1 cut(s) 256
MhlI GDGCHC 3 cut(s) 771, 1348, 1374
MluCI AATT 9 cut(s) 318, 402, 431, 505, 561, 1015, 1279, 1363, 1429
MluI ACGCGT 1 cut(s) 123
MlyI GAGTC 3 cut(s) 1487, 1619, 1673
MroXI GAANNNNTTC 1 cut(s) 447
MseI TTAA 3 cut(s) 503, 896, 1553
MspA1I CMGCKG 4 cut(s) 103, 328, 569, 709
MspCI CTTAAG 1 cut(s) 1552
MspI CCGG 4 cut(s) 238, 287, 751, 1474
MspR9I CCNGG 1 cut(s) 752
Mva1269I GAATGC 2 cut(s) 1111, 1164
MvnI CGCG 2 cut(s) 66, 125
MwoI GCNNNNNNNGC 1 cut(s) 238
NciI CCSGG 1 cut(s) 752
NdeII GATC 6 cut(s) 41, 52, 256, 373, 1021, 1706
NlaIII CATG 4 cut(s) 25, 1135, 1208, 1713
NlaIV GGNNCC 1 cut(s) 197
NmeAIII GCCGAG 3 cut(s) 89, 163, 937
NmuCI GTSAC 4 cut(s) 166, 1424, 1490, 1538
NspV TTCGAA 1 cut(s) 1276
PaeR7I CTCGAG 3 cut(s) 260, 851, 1260
PagI TCATGA 1 cut(s) 1709
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PctI GAATGC 2 cut(s) 1111, 1164
PdmI GAANNNNTTC 1 cut(s) 447
PfeI GAWTC 5 cut(s) 150, 538, 1534, 1616, 1649
PkrI GCNGC 8 cut(s) 65, 102, 117, 160, 192, 285, 327, 330
PleI GAGTC 3 cut(s) 1487, 1618, 1673
PpsI GAGTC 3 cut(s) 1487, 1618, 1673
PspFI CCCAGC 1 cut(s) 1480
PspN4I GGNNCC 1 cut(s) 197
PspPI GGNCC 4 cut(s) 226, 235, 250, 1483
PspXI VCTCGAGB 2 cut(s) 851, 1260
PsuI RGATCY 1 cut(s) 256
PvuII CAGCTG 3 cut(s) 103, 328, 709
RsaI GTAC 3 cut(s) 943, 1252, 1288
RsaNI GTAC 3 cut(s) 942, 1251, 1287
SaqAI TTAA 3 cut(s) 503, 896, 1553
SatI GCNGC 8 cut(s) 64, 101, 116, 159, 191, 284, 326, 329
Sau3AI GATC 6 cut(s) 41, 52, 256, 373, 1021, 1706
Sau96I GGNCC 4 cut(s) 226, 235, 250, 1483
ScaI AGTACT 1 cut(s) 1252
SchI GAGTC 3 cut(s) 1487, 1619, 1673
ScrFI CCNGG 1 cut(s) 752
SduI GDGCHC 3 cut(s) 771, 1348, 1374
SfaNI GCATC 4 cut(s) 1123, 1467, 1637, 1677
Sfr274I CTCGAG 3 cut(s) 260, 851, 1260
SfuI TTCGAA 1 cut(s) 1276
SinI GGWCC 1 cut(s) 235
SlaI CTCGAG 3 cut(s) 260, 851, 1260
SmlI CTYRAG 6 cut(s) 260, 623, 686, 851, 1260, 1552
SmoI CTYRAG 6 cut(s) 260, 623, 686, 851, 1260, 1552
Sse9I AATT 9 cut(s) 318, 402, 431, 505, 561, 1015, 1279, 1363, 1429
SsiI CCGC 9 cut(s) 64, 118, 158, 190, 193, 284, 331, 495, 569
SspMI CTAG 3 cut(s) 581, 1404, 1499
StyD4I CCNGG 1 cut(s) 750
TaaI ACNGT 1 cut(s) 1271
TaqII GACCGA 1 cut(s) 600
TasI AATT 9 cut(s) 318, 402, 431, 505, 561, 1015, 1279, 1363, 1429
TatI WGTACW 1 cut(s) 1250
TauI GCSGC 4 cut(s) 66, 161, 193, 286
TfiI GAWTC 5 cut(s) 150, 538, 1534, 1616, 1649
Tru1I TTAA 3 cut(s) 503, 896, 1553
Tru9I TTAA 3 cut(s) 503, 896, 1553
TscAI CASTG 2 cut(s) 908, 1276
TseFI GTSAC 4 cut(s) 166, 1424, 1490, 1538
TseI GCWGC 4 cut(s) 100, 115, 325, 328
Tsp45I GTSAC 4 cut(s) 166, 1424, 1490, 1538
TspDTI ATGAA 5 cut(s) 84, 456, 483, 1020, 1380
TspGWI ACGGA 1 cut(s) 564
TspRI CASTG 2 cut(s) 908, 1276
Vha464I CTTAAG 1 cut(s) 1552
VpaK11BI GGWCC 1 cut(s) 235
XapI RAATTY 5 cut(s) 402, 505, 561, 1279, 1363
XhoI CTCGAG 3 cut(s) 260, 851, 1260
XmnI GAANNNNTTC 1 cut(s) 447
XspI CTAG 3 cut(s) 581, 1404, 1499
ZrmI AGTACT 1 cut(s) 1252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.