Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0015619

Physical Location & Seq

Genomic Coordinates Forward (+)

12234617 .. 12239197

Gene Structure 4581 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG151100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

ATGACTCAACCACTCTCTCTCATGGTTTGTGGAAGACGACGATCCTCCTCCGAGGATCTGAGTCGCCGCGATGAAATAGAGGACAACAATCCAAGCATATCGCAGCTGGTCTCGGCGCTGCGGGACGCGTTTCAGGAGGCCGAGTTCGACAGAATCGAAGCGGCCTTAGTCGCCAGAGAGGCTGAGCTGAAGCGGCAGAACCTGATTCTGAGGGAGAAGGTCGAGTTGGGCCTGCTGGACGGGCTCAACCTGGCCCAAGATCTCGAGGCTCTGAAGGAGAGTAGGCCGCCGGAGAAGGTGAAGGACGAGGACAAAGAGGTAATTTCGCAGCTGCGGAAGAAGAACAGGCGATTAGAGATGGAAAAATTGAGGCTTGATCGTGAGTATGAGGCTCTGGAGAGCCGAATTTTGGGTTTAGAGGATGATACTACGAAATTGGTGAATGAAATGCTTCTGGGTTCAGGTAGAAATGAAGGAACGGGTATGAGAGACAATGGCAGTGTTGTAAATTTGGAGAATGTGTTTGAGCGTTTGATTGAGGCTCAGGCAAACGGAAATCTGCAAATTTCAGGGGAAGCAAAGCTAGACCGAGTGATTGAGAAACAGAGGGAGGAGTATGCAACACTTGAGAAAAGGCACAAGTTTGAGATGGAGAAAATGCTAAAAGTTGAGAATGAGTTTGCAGCCCTCAAGAGAAAGCACCAGCTTCAGCTGGAGGAAAAAGTCAAGGTTGAGAATGAGCTGAAGGCTTGCCGGGTAGAGATTGAGGGGCTCAAAGTTGAGAACGAGGTGAAGAAGTTGAAGGAAGTGCTAAAGGCAGTTGAGGAAAATCATAAGAGTGAGTATAAAGCACTCGAGCAAAAGCACCAATCTCACCTTCTGGGAGTTGAGAATGAGTTAAAGCGCTGCAAAGCCGAGCTCCAGGGGTTAAAGGAGGAGCAAAGTACCTCAGATGAGAAGTATGAGAAGCTTCTGGAGGAGGTGAATAAGCACAGAAAAGAGGAGGATGAAGTGGTCAATTTCGATCCCCAAAGGCAGAGCAAGGAGGTGGAGAGTGAGCCTAATGTGGTATTGGAGAACGAAATCTCTCGGTTAGATAAGTTTAGGAATGCAAAGCATCTTGGTTCAAAAAACATGGATAAGAGAAGCAAAAATAGTGGAATGCCAGATGGTAGTAGAAAACAGAAGTGTATTGTAACCCCTAACCATGTCATAAATGTAGAGAATGATTTTTGTGGTTCTGTGCCAGCGAGTACTTCCCCTCGAGGAAACAGTGTTCGAAATTCAGGGAGGGAAGGAGGGAGGGAGGTCTTTACAGCTTATATCACAACAGGTTCGGAGATATTCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

450

Amino Acids

51.66

Weight (kDa)

5.65

Isoelectric Point (pI)

54.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015619)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g04040 FvH4_5g04040 FvH4_5g04040
rosa_chinensis	RchiOBHm_Chr7g0195481
rosa_laevigata	RLG00000004117
rosa_multiflora	Rmu_sc0013420.1_g000004 Rmu_sc0019107.1_g000002
rosa_roxburghii	Rroxscaffold_3G00260440
rosa_rugosa	Rorug07G0023700 Rorug07G0023700 Rorug07G0023800
rosa_samantha	Rh7AG151100 Rh7BG152800 Rh7CG156300 Rh7DG152100
rosa_wichuraiana	Rw7G012900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	1263
AccII	CGCG	2 cut(s)	69, 128
AciI	CCGC	6 cut(s)	67, 121, 161, 193, 287, 334
AclWI	GGATC	3 cut(s)	36, 63, 1019
AcsI	RAATTY	4 cut(s)	405, 508, 564, 1282
AcuI	CTGAAG	4 cut(s)	209, 293, 692, 764
AfaI	GTAC	2 cut(s)	946, 1255
AfeI	AGCGCT	1 cut(s)	905
AfiI	CCNNNNNNNGG	1 cut(s)	409
AflIII	ACRYGT	1 cut(s)	126
AgsI	TTSAA	2 cut(s)	802, 1128
AjnI	CCWGG	2 cut(s)	249, 921
AjuI	GAANNNNNNNTTGG	4 cut(s)	209, 241, 861, 893
AloI	GAACNNNNNNTCC	4 cut(s)	128, 160, 1260, 1292
Alw21I	GWGCWC	1 cut(s)	921
Alw26I	GTCTC	2 cut(s)	115, 483
AlwI	GGATC	3 cut(s)	36, 63, 1019
AlwNI	CAGNNNCTG	1 cut(s)	202
Ama87I	CYCGRG	3 cut(s)	263, 854, 1263
Aor51HI	AGCGCT	1 cut(s)	905
AoxI	GGCC	5 cut(s)	138, 162, 229, 252, 284
ApeKI	GCWGC	6 cut(s)	103, 118, 328, 331, 683, 906
ApoI	RAATTY	4 cut(s)	405, 508, 564, 1282
Asp700I	GAANNNNTTC	1 cut(s)	450
AspLEI	GCGC	2 cut(s)	118, 906
AspS9I	GGNCC	2 cut(s)	229, 253
AsuC2I	CCSGG	1 cut(s)	755
AsuHPI	GGTGA	5 cut(s)	310, 451, 802, 866, 994
AsuII	TTCGAA	1 cut(s)	1279
AvaI	CYCGRG	3 cut(s)	263, 854, 1263
BanII	GRGCYC	3 cut(s)	246, 774, 921
BbsI	GAAGAC	1 cut(s)	40
Bbv12I	GWGCWC	1 cut(s)	921
BbvI	GCAGC	6 cut(s)	105, 115, 318, 340, 695, 893
BccI	CCATC	3 cut(s)	352, 643, 1163
BciT130I	CCWGG	2 cut(s)	251, 923
BcnI	CCSGG	1 cut(s)	755
BcoDI	GTCTC	2 cut(s)	115, 483
BfaI	CTAG	1 cut(s)	584
BfoI	RGCGCY	2 cut(s)	119, 907
BglI	GCCNNNNNGGC	1 cut(s)	179
BglII	AGATCT	1 cut(s)	259
BlpI	GCTNAGC	1 cut(s)	183
BmcAI	AGTACT	1 cut(s)	1255
Bme1390I	CCNGG	3 cut(s)	251, 755, 923
BmeT110I	CYCGRG	3 cut(s)	263, 854, 1263
BmgT120I	GGNCC	2 cut(s)	229, 253
BmrFI	CCNGG	3 cut(s)	251, 755, 923
BmsI	GCATC	1 cut(s)	1126
BpiI	GAAGAC	1 cut(s)	40
BpmI	CTGGAG	4 cut(s)	416, 734, 905, 995
Bpu10I	CCTNAGC	1 cut(s)	543
Bpu1102I	GCTNAGC	1 cut(s)	183
Bpu14I	TTCGAA	1 cut(s)	1279
BpuEI	CTTGAG	2 cut(s)	647, 674
BpuMI	CCSGG	1 cut(s)	755
BsaI	GGTCTC	1 cut(s)	115
BsaJI	CCNNGG	2 cut(s)	51, 922
BsaXI	ACNNNNNCTCC	4 cut(s)	128, 158, 506, 536
Bsc4I	CCNNNNNNNGG	1 cut(s)	409
BseBI	CCWGG	2 cut(s)	251, 923
BseDI	CCNNGG	2 cut(s)	51, 922
BseGI	GGATG	2 cut(s)	427, 1012
BseLI	CCNNNNNNNGG	1 cut(s)	409
BseMII	CTCAG	5 cut(s)	50, 174, 200, 557, 963
BseRI	GAGGAG	5 cut(s)	37, 626, 950, 992, 1016
BseXI	GCAGC	6 cut(s)	105, 115, 318, 340, 695, 893
Bsh1236I	CGCG	2 cut(s)	69, 128
BshFI	GGCC	5 cut(s)	140, 164, 231, 254, 286
BsiHKAI	GWGCWC	1 cut(s)	921
BsiHKCI	CYCGRG	3 cut(s)	263, 854, 1263
BsiSI	CCGG	2 cut(s)	290, 754
BslFI	GGGAC	1 cut(s)	137
BslI	CCNNNNNNNGG	1 cut(s)	409
BsmAI	GTCTC	2 cut(s)	115, 483
BsmFI	GGGAC	1 cut(s)	137
BsmI	GAATGC	2 cut(s)	1114, 1167
BsnI	GGCC	5 cut(s)	140, 164, 231, 254, 286
Bso31I	GGTCTC	1 cut(s)	115
BsoBI	CYCGRG	3 cut(s)	263, 854, 1263
Bsp119I	TTCGAA	1 cut(s)	1279
Bsp1286I	GDGCHC	3 cut(s)	246, 774, 921
Bsp143I	GATC	5 cut(s)	41, 55, 259, 376, 1024
Bsp1720I	GCTNAGC	1 cut(s)	183
BspACI	CCGC	6 cut(s)	67, 121, 161, 193, 287, 334
BspANI	GGCC	5 cut(s)	140, 164, 231, 254, 286
BspCNI	CTCAG	5 cut(s)	51, 175, 201, 556, 962
BspFNI	CGCG	2 cut(s)	69, 128
BspPI	GGATC	3 cut(s)	36, 63, 1019
BspT104I	TTCGAA	1 cut(s)	1279
BspTNI	GGTCTC	1 cut(s)	115
BssECI	CCNNGG	2 cut(s)	51, 922
BssMI	GATC	5 cut(s)	41, 55, 259, 376, 1024
Bst2UI	CCWGG	2 cut(s)	251, 923
Bst4CI	ACNGT	1 cut(s)	1274
BstBI	TTCGAA	1 cut(s)	1279
BstC8I	GCNNGC	3 cut(s)	233, 751, 1248
BstDEI	CTNAG	6 cut(s)	59, 166, 183, 209, 543, 949
BstF5I	GGATG	2 cut(s)	427, 1012
BstFNI	CGCG	2 cut(s)	69, 128
BstH2I	RGCGCY	2 cut(s)	119, 907
BstHHI	GCGC	2 cut(s)	118, 906
BstKTI	GATC	5 cut(s)	44, 58, 262, 379, 1027
BstMAI	GTCTC	2 cut(s)	115, 483
BstMBI	GATC	5 cut(s)	41, 55, 259, 376, 1024
BstMWI	GCNNNNNNNGC	4 cut(s)	170, 179, 193, 241
BstNI	CCWGG	2 cut(s)	251, 923
BstSCI	CCNGG	3 cut(s)	249, 753, 921
BstUI	CGCG	2 cut(s)	69, 128
BstV1I	GCAGC	6 cut(s)	105, 115, 318, 340, 695, 893
BstV2I	GAAGAC	1 cut(s)	40
BstX2I	RGATCY	2 cut(s)	55, 259
BstYI	RGATCY	2 cut(s)	55, 259
BsuRI	GGCC	5 cut(s)	140, 164, 231, 254, 286
BtgZI	GCGATG	1 cut(s)	84
BtsCI	GGATG	2 cut(s)	427, 1012
BtsI	GCAGTG	1 cut(s)	505
BtsIMutI	CAGTG	2 cut(s)	505, 1279
Cac8I	GCNNGC	3 cut(s)	233, 751, 1248
CaiI	CAGNNNCTG	1 cut(s)	202
CfoI	GCGC	2 cut(s)	118, 906
Cfr13I	GGNCC	2 cut(s)	229, 253
CseI	GACGC	1 cut(s)	134
Csp6I	GTAC	2 cut(s)	945, 1254
CspCI	CAANNNNNGTGG	2 cut(s)	1138, 1173
CviAII	CATG	3 cut(s)	22, 1135, 1208
CviQI	GTAC	2 cut(s)	945, 1254
DdeI	CTNAG	6 cut(s)	59, 166, 183, 209, 543, 949
DpnI	GATC	5 cut(s)	43, 57, 261, 378, 1026
DpnII	GATC	5 cut(s)	41, 55, 259, 376, 1024
Ecl136II	GAGCTC	1 cut(s)	919
Eco24I	GRGCYC	3 cut(s)	246, 774, 921
Eco31I	GGTCTC	1 cut(s)	115
Eco47III	AGCGCT	1 cut(s)	905
Eco53kI	GAGCTC	1 cut(s)	919
Eco57I	CTGAAG	4 cut(s)	209, 293, 692, 764
Eco88I	CYCGRG	3 cut(s)	263, 854, 1263
EcoICRI	GAGCTC	1 cut(s)	919
EcoRII	CCWGG	2 cut(s)	249, 921
EcoT38I	GRGCYC	3 cut(s)	246, 774, 921
FaeI	CATG	3 cut(s)	25, 1138, 1211
FaqI	GGGAC	1 cut(s)	137
FatI	CATG	3 cut(s)	21, 1134, 1207
FauI	CCCGC	1 cut(s)	114
FokI	GGATG	2 cut(s)	434, 1019
FriOI	GRGCYC	3 cut(s)	246, 774, 921
FspBI	CTAG	1 cut(s)	584
GlaI	GCGC	2 cut(s)	117, 905
GsuI	CTGGAG	4 cut(s)	416, 734, 905, 995
HaeII	RGCGCY	2 cut(s)	119, 907
HaeIII	GGCC	5 cut(s)	140, 164, 231, 254, 286
HapII	CCGG	2 cut(s)	290, 754
HgaI	GACGC	1 cut(s)	134
HhaI	GCGC	2 cut(s)	118, 906
Hin1II	CATG	3 cut(s)	25, 1138, 1211
Hin6I	GCGC	2 cut(s)	116, 904
HinP1I	GCGC	2 cut(s)	116, 904
HindIII	AAGCTT	1 cut(s)	968
HinfI	GANTC	4 cut(s)	4, 61, 153, 205
HpaII	CCGG	2 cut(s)	290, 754
HphI	GGTGA	5 cut(s)	310, 451, 802, 866, 994
Hpy188I	TCNGA	6 cut(s)	52, 60, 210, 273, 952, 1339
Hpy188III	TCNNGA	6 cut(s)	134, 263, 380, 395, 691, 974
Hpy99I	CGWCG	1 cut(s)	42
HpyAV	CCTTC	9 cut(s)	211, 268, 289, 295, 467, 739, 796, 887, 1289
HpyCH4III	ACNGT	1 cut(s)	1274
HpyCH4V	TGCA	5 cut(s)	562, 620, 683, 909, 1112
HpyF10VI	GCNNNNNNNGC	4 cut(s)	170, 179, 193, 241
HpyF3I	CTNAG	6 cut(s)	59, 166, 183, 209, 543, 949
Hsp92II	CATG	3 cut(s)	25, 1138, 1211
HspAI	GCGC	2 cut(s)	116, 904
Kzo9I	GATC	5 cut(s)	41, 55, 259, 376, 1024
LmnI	GCTCC	2 cut(s)	924, 937
Lsp1109I	GCAGC	6 cut(s)	105, 115, 318, 340, 695, 893
LweI	GCATC	1 cut(s)	1126
MaeI	CTAG	1 cut(s)	584
MaeIII	GTNAC	1 cut(s)	1195
MalI	GATC	5 cut(s)	43, 57, 261, 378, 1026
MboI	GATC	5 cut(s)	41, 55, 259, 376, 1024
MboII	GAAGA	4 cut(s)	45, 349, 352, 805
MflI	RGATCY	2 cut(s)	55, 259
MhlI	GDGCHC	3 cut(s)	246, 774, 921
MluCI	AATT	8 cut(s)	321, 365, 405, 434, 508, 564, 1018, 1282
MluI	ACGCGT	1 cut(s)	126
MlyI	GAGTC	1 cut(s)	70
MroXI	GAANNNNTTC	1 cut(s)	450
MseI	TTAA	3 cut(s)	899, 929, 1351
MslI	CAYNNNNRTG	1 cut(s)	837
MspA1I	CMGCKG	3 cut(s)	106, 331, 712
MspI	CCGG	2 cut(s)	290, 754
MspR9I	CCNGG	3 cut(s)	251, 755, 923
Mva1269I	GAATGC	2 cut(s)	1114, 1167
MvaI	CCWGG	2 cut(s)	251, 923
MvnI	CGCG	2 cut(s)	69, 128
MwoI	GCNNNNNNNGC	4 cut(s)	170, 179, 193, 241
NciI	CCSGG	1 cut(s)	755
NdeII	GATC	5 cut(s)	41, 55, 259, 376, 1024
NlaIII	CATG	3 cut(s)	25, 1138, 1211
NmeAIII	GCCGAG	3 cut(s)	92, 166, 940
NspV	TTCGAA	1 cut(s)	1279
PaeR7I	CTCGAG	3 cut(s)	263, 854, 1263
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PctI	GAATGC	2 cut(s)	1114, 1167
PdmI	GAANNNNTTC	1 cut(s)	450
PfeI	GAWTC	2 cut(s)	153, 205
PleI	GAGTC	1 cut(s)	69
PpsI	GAGTC	1 cut(s)	69
Psp124BI	GAGCTC	1 cut(s)	921
Psp6I	CCWGG	2 cut(s)	249, 921
PspGI	CCWGG	2 cut(s)	249, 921
PspPI	GGNCC	2 cut(s)	229, 253
PspXI	VCTCGAGB	2 cut(s)	854, 1263
PstNI	CAGNNNCTG	1 cut(s)	202
PsuI	RGATCY	2 cut(s)	55, 259
PvuII	CAGCTG	3 cut(s)	106, 331, 712
RsaI	GTAC	2 cut(s)	946, 1255
RsaNI	GTAC	2 cut(s)	945, 1254
RseI	CAYNNNNRTG	1 cut(s)	837
SacI	GAGCTC	1 cut(s)	921
SaqAI	TTAA	3 cut(s)	899, 929, 1351
Sau3AI	GATC	5 cut(s)	41, 55, 259, 376, 1024
Sau96I	GGNCC	2 cut(s)	229, 253
ScaI	AGTACT	1 cut(s)	1255
SchI	GAGTC	1 cut(s)	70
ScrFI	CCNGG	3 cut(s)	251, 755, 923
SduI	GDGCHC	3 cut(s)	246, 774, 921
SfaNI	GCATC	1 cut(s)	1126
Sfr274I	CTCGAG	3 cut(s)	263, 854, 1263
SfuI	TTCGAA	1 cut(s)	1279
SlaI	CTCGAG	3 cut(s)	263, 854, 1263
SmiMI	CAYNNNNRTG	1 cut(s)	837
SmlI	CTYRAG	5 cut(s)	263, 626, 689, 854, 1263
SmoI	CTYRAG	5 cut(s)	263, 626, 689, 854, 1263
Sse9I	AATT	8 cut(s)	321, 365, 405, 434, 508, 564, 1018, 1282
SsiI	CCGC	6 cut(s)	67, 121, 161, 193, 287, 334
SspMI	CTAG	1 cut(s)	584
SstI	GAGCTC	1 cut(s)	921
StyD4I	CCNGG	3 cut(s)	249, 753, 921
TaaI	ACNGT	1 cut(s)	1274
TaqI	TCGA	8 cut(s)	147, 156, 222, 264, 855, 1023, 1264, 1279
TaqII	GACCGA	1 cut(s)	603
TasI	AATT	8 cut(s)	321, 365, 405, 434, 508, 564, 1018, 1282
TatI	WGTACW	1 cut(s)	1253
TauI	GCSGC	4 cut(s)	69, 164, 196, 289
TfiI	GAWTC	2 cut(s)	153, 205
Tru1I	TTAA	3 cut(s)	899, 929, 1351
Tru9I	TTAA	3 cut(s)	899, 929, 1351
TscAI	CASTG	2 cut(s)	505, 1279
TseI	GCWGC	6 cut(s)	103, 118, 328, 331, 683, 906
TspDTI	ATGAA	4 cut(s)	87, 459, 486, 1023
TspGWI	ACGGA	1 cut(s)	567
TspRI	CASTG	2 cut(s)	505, 1279
XapI	RAATTY	4 cut(s)	405, 508, 564, 1282
XhoI	CTCGAG	3 cut(s)	263, 854, 1263
XmnI	GAANNNNTTC	1 cut(s)	450
XspI	CTAG	1 cut(s)	584
ZrmI	AGTACT	1 cut(s)	1255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.