Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019107.1

Orthogroup ID

OG0015619

Physical Location & Seq

Genomic Coordinates Forward (+)

4725 .. 7480

Gene Structure 2756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019107.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1692 bp

atggtttgtggaagacgacgatcctcctccgatctcagtcgccgcgatgaaatagaggacaacaatccaagcatatcgcagctggtctcggcgctgcgggacgcgtttcaggaggccgagttcgacagaatcgaagcggccttagtcgccagagaggccgacctgaagcggcggaaccagattctgaaggagaaggtcgagttgggcctgctggaccggctcaacctggcccaagatctcgaggctctgaaggagagtaggccgccggagaaggtgaaggaggaggacaaagaggtaatttcgcagctgcggaggaagaacagtagattagagatggaaaaattgaggcttgatcgtgagtatgaggcgctggagagccgaattttgggtttagaggatgatactacgaaattgttgaatgaaatgcttctgggttcaggtagaaatgaaggaacgattatgagagacaatggcggtgttttaaatttggagaatgtgtttgagtgtttgattgagaatcaggcaaacggaaatctgcaaatttcaggggaagcaaagctagaccgagtgattgagaaacagagggaggagtatgcaacacttgagaaaaggcataagtttgagatggagaaaatgctaaaagttgagaatgagtttgcagccctcaagagaaaacaccagcttcagctggaggaaaaagtcaaggttgagaatgagctgaaggcttgccgggtagagattgaggggctcaaagttgagaatgaggtgaagaagttgaaggaagtgctaaaggcagtcgaggaaaatcataagagcgagtataaagcactcgagcaaaagcaccaatctcaccttctgggagttgagaatgagttaaggcactgcaaagccgagcttcagggaataaaggaggagctaagtacctcagatgagaagtatgagaagcttctggaggaggtgaataagcacaggaaagaggaggatgaagtggtcaatttcgatccccaaaggcagagcaaggaggtggagagtgagcctaatgtggtattggaggacgaaatctctcggttagataagtttaggaatgcaaagcatcttggttcaaaaaacatggataagagaagcaaaaatagtggaatgccagatggtagtagaaaacagaagtgtattgtaacccctaaccatgtcataaatgtagagaatgatttttgtggttctgtgccagcgagtacttcccctcgaggaaacagtgttcgaaattcaggtacttctaaatcttcaaatgcagacaccattctgcttagcgatagcgatgatgattgtgctcctgcaaaacagaaaaattttgggctcaaaagaaaacgagcttcatctccaaatgctagtaacaataacaatggtggtcacaatttcaaacgagagagtttcccgacctctgagaataagcaaagccggatgctgggccgttgtgactctctagttggtggctatggaatacaaaataacccaccgaatcgtgaccaagagaccttaagaccatctgaagaaaaagtaggggaacagaaacctcctgcaaaggtgaatggcgagtctgattccagttctgcatctatgttcagttctgatgattcggaggatgacgatgacatcaatcttgactcaatgatgctgttcacaacaaacagatcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

563

Amino Acids

64.01

Weight (kDa)

5.49

Isoelectric Point (pI)

58.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015619)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g04040 FvH4_5g04040 FvH4_5g04040
rosa_chinensis	RchiOBHm_Chr7g0195481
rosa_laevigata	RLG00000004117
rosa_multiflora	Rmu_sc0013420.1_g000004 Rmu_sc0019107.1_g000002
rosa_roxburghii	Rroxscaffold_3G00260440
rosa_rugosa	Rorug07G0023700 Rorug07G0023700 Rorug07G0023800
rosa_samantha	Rh7AG151100 Rh7BG152800 Rh7CG156300 Rh7DG152100
rosa_wichuraiana	Rw7G012900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	1239
AccII	CGCG	2 cut(s)	45, 104
AciI	CCGC	8 cut(s)	43, 97, 137, 169, 172, 263, 310, 474
AclWI	GGATC	2 cut(s)	15, 995
AcsI	RAATTY	5 cut(s)	381, 484, 540, 1258, 1342
AcuI	CTGAAG	7 cut(s)	185, 206, 269, 668, 740, 881, 1563
AfaI	GTAC	3 cut(s)	922, 1231, 1267
AfiI	CCNNNNNNNGG	2 cut(s)	385, 1459
AflII	CTTAAG	1 cut(s)	1531
AflIII	ACRYGT	1 cut(s)	102
AgsI	TTSAA	5 cut(s)	418, 778, 1104, 1281, 1414
AjnI	CCWGG	1 cut(s)	225
AjuI	GAANNNNNNNTTGG	4 cut(s)	185, 217, 837, 869
AloI	GAACNNNNNNTCC	4 cut(s)	104, 136, 1236, 1268
Alw21I	GWGCWC	1 cut(s)	1327
Alw26I	GTCTC	3 cut(s)	91, 459, 1520
AlwI	GGATC	2 cut(s)	15, 995
AlwNI	CAGNNNCTG	1 cut(s)	184
Ama87I	CYCGRG	3 cut(s)	239, 830, 1239
AoxI	GGCC	7 cut(s)	114, 138, 156, 205, 228, 260, 1462
ApeKI	GCWGC	5 cut(s)	79, 94, 304, 307, 659
ApoI	RAATTY	5 cut(s)	381, 484, 540, 1258, 1342
Asp700I	GAANNNNTTC	1 cut(s)	426
AspLEI	GCGC	2 cut(s)	94, 370
AspS9I	GGNCC	4 cut(s)	205, 214, 229, 1462
AsuC2I	CCSGG	1 cut(s)	731
AsuHPI	GGTGA	5 cut(s)	286, 778, 842, 970, 1591
AsuII	TTCGAA	1 cut(s)	1255
AvaI	CYCGRG	3 cut(s)	239, 830, 1239
AvaII	GGWCC	1 cut(s)	214
BanII	GRGCYC	2 cut(s)	750, 1353
BbsI	GAAGAC	1 cut(s)	19
Bbv12I	GWGCWC	1 cut(s)	1327
BbvI	GCAGC	5 cut(s)	81, 91, 294, 316, 671
BccI	CCATC	4 cut(s)	328, 619, 1139, 1546
BceAI	ACGGC	1 cut(s)	1449
BciT130I	CCWGG	1 cut(s)	227
BcnI	CCSGG	1 cut(s)	731
BcoDI	GTCTC	3 cut(s)	91, 459, 1520
BfaI	CTAG	3 cut(s)	560, 1383, 1478
BfoI	RGCGCY	2 cut(s)	95, 371
BfrI	CTTAAG	1 cut(s)	1531
BglI	GCCNNNNNGGC	1 cut(s)	155
BglII	AGATCT	1 cut(s)	235
BisI	GCNGC	9 cut(s)	43, 80, 95, 138, 170, 263, 305, 308, 660
BlpI	GCTNAGC	1 cut(s)	1301
BlsI	GCNGC	9 cut(s)	44, 81, 96, 139, 171, 264, 306, 309, 661
BmcAI	AGTACT	1 cut(s)	1231
Bme1390I	CCNGG	2 cut(s)	227, 731
Bme18I	GGWCC	1 cut(s)	214
BmeT110I	CYCGRG	3 cut(s)	239, 830, 1239
BmgT120I	GGNCC	4 cut(s)	205, 214, 229, 1462
BmiI	GGNNCC	1 cut(s)	176
BmrFI	CCNGG	2 cut(s)	227, 731
BmsI	GCATC	4 cut(s)	1102, 1446, 1616, 1656
BpiI	GAAGAC	1 cut(s)	19
BpmI	CTGGAG	3 cut(s)	392, 710, 971
Bpu1102I	GCTNAGC	1 cut(s)	1301
Bpu14I	TTCGAA	1 cut(s)	1255
BpuEI	CTTGAG	2 cut(s)	623, 650
BpuMI	CCSGG	1 cut(s)	731
BsaI	GGTCTC	2 cut(s)	91, 1520
BsaXI	ACNNNNNCTCC	4 cut(s)	104, 134, 482, 512
Bsc4I	CCNNNNNNNGG	2 cut(s)	385, 1459
Bse118I	RCCGGY	1 cut(s)	216
Bse1I	ACTGG	1 cut(s)	1599
BseBI	CCWGG	1 cut(s)	227
BseGI	GGATG	4 cut(s)	403, 988, 1461, 1642
BseLI	CCNNNNNNNGG	2 cut(s)	385, 1459
BseMII	CTCAG	3 cut(s)	49, 939, 1428
BseNI	ACTGG	1 cut(s)	1599
BseRI	GAGGAG	6 cut(s)	16, 296, 602, 926, 968, 992
BseXI	GCAGC	5 cut(s)	81, 91, 294, 316, 671
BseYI	CCCAGC	1 cut(s)	1459
Bsh1236I	CGCG	2 cut(s)	45, 104
BshFI	GGCC	7 cut(s)	116, 140, 158, 207, 230, 262, 1464
BsiHKAI	GWGCWC	1 cut(s)	1327
BsiHKCI	CYCGRG	3 cut(s)	239, 830, 1239
BsiSI	CCGG	4 cut(s)	217, 266, 730, 1453
BslFI	GGGAC	1 cut(s)	113
BslI	CCNNNNNNNGG	2 cut(s)	385, 1459
BsmAI	GTCTC	3 cut(s)	91, 459, 1520
BsmFI	GGGAC	1 cut(s)	113
BsmI	GAATGC	2 cut(s)	1090, 1143
BsnI	GGCC	7 cut(s)	116, 140, 158, 207, 230, 262, 1464
Bso31I	GGTCTC	2 cut(s)	91, 1520
BsoBI	CYCGRG	3 cut(s)	239, 830, 1239
Bsp119I	TTCGAA	1 cut(s)	1255
Bsp1286I	GDGCHC	3 cut(s)	750, 1327, 1353
Bsp143I	GATC	6 cut(s)	20, 31, 235, 352, 1000, 1685
Bsp1720I	GCTNAGC	1 cut(s)	1301
BspACI	CCGC	8 cut(s)	43, 97, 137, 169, 172, 263, 310, 474
BspANI	GGCC	7 cut(s)	116, 140, 158, 207, 230, 262, 1464
BspCNI	CTCAG	3 cut(s)	48, 938, 1429
BspFNI	CGCG	2 cut(s)	45, 104
BspHI	TCATGA	1 cut(s)	1688
BspLI	GGNNCC	1 cut(s)	176
BspPI	GGATC	2 cut(s)	15, 995
BspT104I	TTCGAA	1 cut(s)	1255
BspTI	CTTAAG	1 cut(s)	1531
BspTNI	GGTCTC	2 cut(s)	91, 1520
BsrFI	RCCGGY	1 cut(s)	216
BsrI	ACTGG	1 cut(s)	1599
BssAI	RCCGGY	1 cut(s)	216
BssMI	GATC	6 cut(s)	20, 31, 235, 352, 1000, 1685
Bst2UI	CCWGG	1 cut(s)	227
Bst4CI	ACNGT	2 cut(s)	323, 1250
BstAFI	CTTAAG	1 cut(s)	1531
BstBI	TTCGAA	1 cut(s)	1255
BstC8I	GCNNGC	3 cut(s)	209, 727, 1224
BstDEI	CTNAG	6 cut(s)	35, 142, 917, 925, 1301, 1437
BstF5I	GGATG	4 cut(s)	403, 988, 1461, 1642
BstFNI	CGCG	2 cut(s)	45, 104
BstH2I	RGCGCY	2 cut(s)	95, 371
BstHHI	GCGC	2 cut(s)	94, 370
BstKTI	GATC	6 cut(s)	23, 34, 238, 355, 1003, 1688
BstMAI	GTCTC	3 cut(s)	91, 459, 1520
BstMBI	GATC	6 cut(s)	20, 31, 235, 352, 1000, 1685
BstMWI	GCNNNNNNNGC	3 cut(s)	146, 155, 217
BstNI	CCWGG	1 cut(s)	227
BstSCI	CCNGG	2 cut(s)	225, 729
BstUI	CGCG	2 cut(s)	45, 104
BstV1I	GCAGC	5 cut(s)	81, 91, 294, 316, 671
BstV2I	GAAGAC	1 cut(s)	19
BstX2I	RGATCY	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	235
BsuRI	GGCC	7 cut(s)	116, 140, 158, 207, 230, 262, 1464
BtgZI	GCGATG	2 cut(s)	60, 1326
BtsCI	GGATG	4 cut(s)	403, 988, 1461, 1642
BtsI	GCAGTG	1 cut(s)	880
BtsIMutI	CAGTG	2 cut(s)	880, 1255
Cac8I	GCNNGC	3 cut(s)	209, 727, 1224
CaiI	CAGNNNCTG	1 cut(s)	184
CciI	TCATGA	1 cut(s)	1688
CfoI	GCGC	2 cut(s)	94, 370
Cfr10I	RCCGGY	1 cut(s)	216
Cfr13I	GGNCC	4 cut(s)	205, 214, 229, 1462
CseI	GACGC	1 cut(s)	110
Csp6I	GTAC	3 cut(s)	921, 1230, 1266
CspCI	CAANNNNNGTGG	2 cut(s)	1114, 1149
CviAII	CATG	3 cut(s)	1111, 1184, 1689
CviQI	GTAC	3 cut(s)	921, 1230, 1266
DdeI	CTNAG	6 cut(s)	35, 142, 917, 925, 1301, 1437
DpnI	GATC	6 cut(s)	22, 33, 237, 354, 1002, 1687
DpnII	GATC	6 cut(s)	20, 31, 235, 352, 1000, 1685
DraI	TTTAAA	1 cut(s)	483
EciI	GGCGGA	1 cut(s)	187
Eco24I	GRGCYC	2 cut(s)	750, 1353
Eco31I	GGTCTC	2 cut(s)	91, 1520
Eco47I	GGWCC	1 cut(s)	214
Eco57I	CTGAAG	7 cut(s)	185, 206, 269, 668, 740, 881, 1563
Eco88I	CYCGRG	3 cut(s)	239, 830, 1239
EcoRII	CCWGG	1 cut(s)	225
EcoT38I	GRGCYC	2 cut(s)	750, 1353
FaeI	CATG	3 cut(s)	1114, 1187, 1692
FalI	AAGNNNNNCTT	2 cut(s)	879, 911
FaqI	GGGAC	1 cut(s)	113
FatI	CATG	3 cut(s)	1110, 1183, 1688
FauI	CCCGC	1 cut(s)	90
Fnu4HI	GCNGC	9 cut(s)	43, 80, 95, 138, 170, 263, 305, 308, 660
FokI	GGATG	4 cut(s)	410, 995, 1468, 1649
FriOI	GRGCYC	2 cut(s)	750, 1353
Fsp4HI	GCNGC	9 cut(s)	43, 80, 95, 138, 170, 263, 305, 308, 660
FspBI	CTAG	3 cut(s)	560, 1383, 1478
GlaI	GCGC	2 cut(s)	93, 369
GluI	GCNGC	9 cut(s)	43, 80, 95, 138, 170, 263, 305, 308, 660
GsaI	CCCAGC	1 cut(s)	1463
GsuI	CTGGAG	3 cut(s)	392, 710, 971
HaeII	RGCGCY	2 cut(s)	95, 371
HaeIII	GGCC	7 cut(s)	116, 140, 158, 207, 230, 262, 1464
HapII	CCGG	4 cut(s)	217, 266, 730, 1453
HgaI	GACGC	1 cut(s)	110
HhaI	GCGC	2 cut(s)	94, 370
Hin1II	CATG	3 cut(s)	1114, 1187, 1692
Hin6I	GCGC	2 cut(s)	92, 368
HinP1I	GCGC	2 cut(s)	92, 368
HindIII	AAGCTT	1 cut(s)	944
HinfI	GANTC	9 cut(s)	129, 181, 517, 1472, 1513, 1589, 1595, 1628, 1658
HpaII	CCGG	4 cut(s)	217, 266, 730, 1453
HphI	GGTGA	5 cut(s)	286, 778, 842, 970, 1591
Hpy166II	GTNNAC	1 cut(s)	1674
Hpy188I	TCNGA	9 cut(s)	31, 186, 249, 928, 1438, 1543, 1594, 1624, 1633
Hpy188III	TCNNGA	9 cut(s)	110, 239, 356, 667, 950, 1429, 1517, 1655, 1689
Hpy8I	GTNNAC	1 cut(s)	1674
Hpy99I	CGWCG	1 cut(s)	21
HpyAV	CCTTC	9 cut(s)	181, 187, 244, 265, 271, 443, 715, 772, 863
HpyCH4III	ACNGT	2 cut(s)	323, 1250
HpyCH4V	TGCA	9 cut(s)	538, 596, 659, 885, 1088, 1286, 1331, 1574, 1607
HpyF10VI	GCNNNNNNNGC	3 cut(s)	146, 155, 217
HpyF3I	CTNAG	6 cut(s)	35, 142, 917, 925, 1301, 1437
Hsp92II	CATG	3 cut(s)	1114, 1187, 1692
HspAI	GCGC	2 cut(s)	92, 368
Kzo9I	GATC	6 cut(s)	20, 31, 235, 352, 1000, 1685
LmnI	GCTCC	2 cut(s)	913, 1330
Lsp1109I	GCAGC	5 cut(s)	81, 91, 294, 316, 671
LweI	GCATC	4 cut(s)	1102, 1446, 1616, 1656
MaeI	CTAG	3 cut(s)	560, 1383, 1478
MaeIII	GTNAC	5 cut(s)	1171, 1385, 1403, 1469, 1517
MalI	GATC	6 cut(s)	22, 33, 237, 354, 1002, 1687
MboI	GATC	6 cut(s)	20, 31, 235, 352, 1000, 1685
MboII	GAAGA	5 cut(s)	24, 328, 781, 1269, 1556
MflI	RGATCY	1 cut(s)	235
MhlI	GDGCHC	3 cut(s)	750, 1327, 1353
MluI	ACGCGT	1 cut(s)	102
MlyI	GAGTC	3 cut(s)	1466, 1598, 1652
MroXI	GAANNNNTTC	1 cut(s)	426
MseI	TTAA	3 cut(s)	482, 875, 1532
MspA1I	CMGCKG	3 cut(s)	82, 307, 688
MspCI	CTTAAG	1 cut(s)	1531
MspI	CCGG	4 cut(s)	217, 266, 730, 1453
MspR9I	CCNGG	2 cut(s)	227, 731
Mva1269I	GAATGC	2 cut(s)	1090, 1143
MvaI	CCWGG	1 cut(s)	227
MvnI	CGCG	2 cut(s)	45, 104
MwoI	GCNNNNNNNGC	3 cut(s)	146, 155, 217
NciI	CCSGG	1 cut(s)	731
NdeII	GATC	6 cut(s)	20, 31, 235, 352, 1000, 1685
NlaIII	CATG	3 cut(s)	1114, 1187, 1692
NlaIV	GGNNCC	1 cut(s)	176
NmeAIII	GCCGAG	3 cut(s)	68, 142, 916
NmuCI	GTSAC	3 cut(s)	1403, 1469, 1517
NspV	TTCGAA	1 cut(s)	1255
PaeR7I	CTCGAG	3 cut(s)	239, 830, 1239
PagI	TCATGA	1 cut(s)	1688
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PctI	GAATGC	2 cut(s)	1090, 1143
PdmI	GAANNNNTTC	1 cut(s)	426
PfeI	GAWTC	6 cut(s)	129, 181, 517, 1513, 1595, 1628
PkrI	GCNGC	9 cut(s)	44, 81, 96, 139, 171, 264, 306, 309, 661
PleI	GAGTC	3 cut(s)	1466, 1597, 1652
PpsI	GAGTC	3 cut(s)	1466, 1597, 1652
Psp6I	CCWGG	1 cut(s)	225
PspFI	CCCAGC	1 cut(s)	1459
PspGI	CCWGG	1 cut(s)	225
PspN4I	GGNNCC	1 cut(s)	176
PspPI	GGNCC	4 cut(s)	205, 214, 229, 1462
PspXI	VCTCGAGB	2 cut(s)	830, 1239
PstNI	CAGNNNCTG	1 cut(s)	184
PsuI	RGATCY	1 cut(s)	235
PvuII	CAGCTG	3 cut(s)	82, 307, 688
RsaI	GTAC	3 cut(s)	922, 1231, 1267
RsaNI	GTAC	3 cut(s)	921, 1230, 1266
SaqAI	TTAA	3 cut(s)	482, 875, 1532
SatI	GCNGC	9 cut(s)	43, 80, 95, 138, 170, 263, 305, 308, 660
Sau3AI	GATC	6 cut(s)	20, 31, 235, 352, 1000, 1685
Sau96I	GGNCC	4 cut(s)	205, 214, 229, 1462
ScaI	AGTACT	1 cut(s)	1231
SchI	GAGTC	3 cut(s)	1466, 1598, 1652
ScrFI	CCNGG	2 cut(s)	227, 731
SduI	GDGCHC	3 cut(s)	750, 1327, 1353
SfaNI	GCATC	4 cut(s)	1102, 1446, 1616, 1656
Sfr274I	CTCGAG	3 cut(s)	239, 830, 1239
SfuI	TTCGAA	1 cut(s)	1255
SinI	GGWCC	1 cut(s)	214
SlaI	CTCGAG	3 cut(s)	239, 830, 1239
SmlI	CTYRAG	6 cut(s)	239, 602, 665, 830, 1239, 1531
SmoI	CTYRAG	6 cut(s)	239, 602, 665, 830, 1239, 1531
SsiI	CCGC	8 cut(s)	43, 97, 137, 169, 172, 263, 310, 474
SspMI	CTAG	3 cut(s)	560, 1383, 1478
StyD4I	CCNGG	2 cut(s)	225, 729
TaaI	ACNGT	2 cut(s)	323, 1250
TaqI	TCGA	9 cut(s)	123, 132, 198, 240, 798, 831, 999, 1240, 1255
TaqII	GACCGA	1 cut(s)	579
TatI	WGTACW	1 cut(s)	1229
TauI	GCSGC	4 cut(s)	45, 140, 172, 265
TfiI	GAWTC	6 cut(s)	129, 181, 517, 1513, 1595, 1628
Tru1I	TTAA	3 cut(s)	482, 875, 1532
Tru9I	TTAA	3 cut(s)	482, 875, 1532
TscAI	CASTG	2 cut(s)	887, 1255
TseFI	GTSAC	3 cut(s)	1403, 1469, 1517
TseI	GCWGC	5 cut(s)	79, 94, 304, 307, 659
Tsp45I	GTSAC	3 cut(s)	1403, 1469, 1517
TspDTI	ATGAA	5 cut(s)	63, 435, 462, 999, 1359
TspGWI	ACGGA	1 cut(s)	543
TspRI	CASTG	2 cut(s)	887, 1255
Vha464I	CTTAAG	1 cut(s)	1531
VpaK11BI	GGWCC	1 cut(s)	214
XapI	RAATTY	5 cut(s)	381, 484, 540, 1258, 1342
XhoI	CTCGAG	3 cut(s)	239, 830, 1239
XmnI	GAANNNNTTC	1 cut(s)	426
XspI	CTAG	3 cut(s)	560, 1383, 1478
ZrmI	AGTACT	1 cut(s)	1231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.