Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0015619

Physical Location & Seq

Genomic Coordinates Forward (+)

12264895 .. 12269215

Gene Structure 4321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G012900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1713 bp

ATGACTCAACCACTCTCTCTCATGGTTTGTGGAAGACGACGATCCGATATGAGTGGCCGCGATGAAATAGAGGACAACAATCCAAGCATATCGCAGCTGGTCTCGGCGCTGCGGGACGCGTTTCAGGAGGCCGAGTTCGACAGAATCGAAGCGGCCTTAGTCGCCAGAGAGGCCGAGCTGAAGCGGCGGAACCGGATTTTGAAGGAGAAGGTCGAGTTGGGCCTGCTGGACCGGCTCAAACTGGCCCAAGATCTCGAGGCTCTGAAGGAGAGTAGGCCGCCGGAGAAGGTGAAGGAGGAGGACAAAGAGGTAATTTCGCAGCTGCGGAGGAAGAACGGTAGATTAGAGATGGAAAAATTGAGGCTTGATCGTGAGTATGAGGCTCTGGAGAGCCGAATTTTGGGTTTAGAGGATGATACTACGAAATTGTTGAATGAAATGCTTCTGGGTTCAGGTAGAAATGAAGGAACGATTATGAGAGACAATGGCGGTGTTTTAAATTTGGAGAATGTGTTTGAGTGTTTGATTGAGAATCAGGCAAACGGAAATCTGCAAATTTCAGCAGGGGAAGCAAAGCTAGACCGAGTGATTGAGAAACAGAGGGAGGAGTATGCAACACTTGAGAAAAGGCATAAGTTTGAGATGGAGAAAATGCTAAAAGTTGAGAATGAGTTTGCAGCCCTCAAGAGAAAACACCAGCTTCAGCTGGAGGAGAAAGTCAAGGTTGAGAATGAGCTGAAGGCTTGCTGGGTAGAGATTGAGGGGCTCAAAGTTGAGAATGAGGTGAAGAAGTTGAAGGAAGTGCTAAAGGCAGTCGAGGAAAATCATAAGAGCGAGTATAAAGCACTCGAGCAAAAGCACCAATCTCACCTTCTGGGAGTTGAGAATGAGTTAAGGCACTGCAAAGCCGAGCTTCAGGGATTAAAGGAGGAGCTAAGTACCTCAGATGAGAAGTATGAGAAGCTTCTGGAGGAGGTGAATAAGCACAGGAAAGAGGAGAATGAAGTGGTCAATTTCGATCCCCAAAGGCAGAGCAAGGAGGTGGAGAGTGAGCCTGATGTGGTATTGGAGAACGAAATCTCTCGGTTAGATAAGTTTAGGAATGCAAAGCATCTTGGTTCAAAAAACATGGATAAGAGAAGCAAAAATAGTGGAATGCCAGATGGTAGTAGAAAACAGAAGCGTATTGTAACCCCTAACCATGTCATAAATGTAGAGAATGATTTTTGTGGTTCTGTGCCAGCGAGTACTTCCCCTCGAGGAAACAGTGTTCGAAATTCAGGTACTTCTAAATCTTCAAATGCAGACACCATTCTGCTTAGCGATAGCGATGATGATTGTGCTCCTGCAAAACAGAAAAATTTTGGGCTCAAAAGAAAACGAGCTTCATCTCCAAATGCTAGTAACAATAACAATGGTGGTCACAATTTCGAACGAGAGAGTTTCCCGACCTCTGAGAATAAGCAAAGCCGGATGCTGGGCCGCTGTGACTCTCTAGTTGGTGGCTATGGAATACAAAATAACCCACCGAGTCGTGACCAAGAGACCTTAAGACCATCTGAAGAAAAAGTAGGGGAAAAACAGAAGTCTCCTGCAAAGGTGAATGGCGAGTCTGATTCCAGTTCTGCATCTATGTTCAGTTCTGATGATTCGGAGGATGACGATGACATCAATCTTGAATCAATGATGCTGTTCACAACAAACAGATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

570

Amino Acids

64.81

Weight (kDa)

5.54

Isoelectric Point (pI)

57.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015619)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g04040 FvH4_5g04040 FvH4_5g04040
rosa_chinensis	RchiOBHm_Chr7g0195481
rosa_laevigata	RLG00000004117
rosa_multiflora	Rmu_sc0013420.1_g000004 Rmu_sc0019107.1_g000002
rosa_roxburghii	Rroxscaffold_3G00260440
rosa_rugosa	Rorug07G0023700 Rorug07G0023700 Rorug07G0023800
rosa_samantha	Rh7AG151100 Rh7BG152800 Rh7CG156300 Rh7DG152100
rosa_wichuraiana	Rw7G012900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	1257
AccII	CGCG	2 cut(s)	60, 119
AciI	CCGC	9 cut(s)	58, 112, 152, 184, 187, 278, 325, 489, 1483
AclWI	GGATC	2 cut(s)	36, 1013
AcoI	YGGCCR	1 cut(s)	55
AcsI	RAATTY	5 cut(s)	396, 499, 555, 1276, 1360
AcuI	CTGAAG	6 cut(s)	200, 284, 686, 758, 899, 1581
AfaI	GTAC	3 cut(s)	940, 1249, 1285
AfiI	CCNNNNNNNGG	2 cut(s)	400, 1477
AflII	CTTAAG	1 cut(s)	1549
AflIII	ACRYGT	1 cut(s)	117
AgsI	TTSAA	6 cut(s)	202, 433, 796, 1122, 1299, 1679
AjuI	GAANNNNNNNTTGG	4 cut(s)	200, 232, 855, 887
AloI	GAACNNNNNNTCC	4 cut(s)	119, 151, 1254, 1286
Alw21I	GWGCWC	1 cut(s)	1345
Alw26I	GTCTC	4 cut(s)	106, 474, 1538, 1593
AlwI	GGATC	2 cut(s)	36, 1013
Ama87I	CYCGRG	3 cut(s)	254, 848, 1257
AoxI	GGCC	8 cut(s)	55, 129, 153, 171, 220, 243, 275, 1480
ApeKI	GCWGC	5 cut(s)	94, 109, 319, 322, 677
ApoI	RAATTY	5 cut(s)	396, 499, 555, 1276, 1360
Asp700I	GAANNNNTTC	1 cut(s)	441
AspLEI	GCGC	1 cut(s)	109
AspS9I	GGNCC	4 cut(s)	220, 229, 244, 1480
AsuHPI	GGTGA	5 cut(s)	301, 796, 860, 988, 1612
AsuII	TTCGAA	2 cut(s)	1273, 1431
AvaI	CYCGRG	3 cut(s)	254, 848, 1257
AvaII	GGWCC	1 cut(s)	229
BanII	GRGCYC	2 cut(s)	768, 1371
BbsI	GAAGAC	1 cut(s)	40
Bbv12I	GWGCWC	1 cut(s)	1345
BbvI	GCAGC	5 cut(s)	96, 106, 309, 331, 689
BccI	CCATC	4 cut(s)	343, 637, 1157, 1564
BcoDI	GTCTC	4 cut(s)	106, 474, 1538, 1593
BfaI	CTAG	3 cut(s)	578, 1401, 1496
BfoI	RGCGCY	1 cut(s)	110
BfrI	CTTAAG	1 cut(s)	1549
BglI	GCCNNNNNGGC	1 cut(s)	170
BglII	AGATCT	1 cut(s)	250
BlpI	GCTNAGC	1 cut(s)	1319
BmcAI	AGTACT	1 cut(s)	1249
Bme18I	GGWCC	1 cut(s)	229
BmeT110I	CYCGRG	3 cut(s)	254, 848, 1257
BmgT120I	GGNCC	4 cut(s)	220, 229, 244, 1480
BmiI	GGNNCC	1 cut(s)	191
BmsI	GCATC	4 cut(s)	1120, 1464, 1637, 1677
BpiI	GAAGAC	1 cut(s)	40
BpmI	CTGGAG	3 cut(s)	407, 728, 989
Bpu1102I	GCTNAGC	1 cut(s)	1319
Bpu14I	TTCGAA	2 cut(s)	1273, 1431
BpuEI	CTTGAG	2 cut(s)	641, 668
BsaI	GGTCTC	2 cut(s)	106, 1538
BsaWI	WCCGGW	1 cut(s)	192
BsaXI	ACNNNNNCTCC	4 cut(s)	119, 149, 497, 527
Bsc4I	CCNNNNNNNGG	2 cut(s)	400, 1477
Bse118I	RCCGGY	1 cut(s)	231
Bse1I	ACTGG	2 cut(s)	246, 1620
BseGI	GGATG	3 cut(s)	418, 1479, 1663
BseLI	CCNNNNNNNGG	2 cut(s)	400, 1477
BseMII	CTCAG	2 cut(s)	957, 1446
BseNI	ACTGG	2 cut(s)	246, 1620
BseRI	GAGGAG	6 cut(s)	311, 620, 725, 944, 986, 1010
BseXI	GCAGC	5 cut(s)	96, 106, 309, 331, 689
BseYI	CCCAGC	2 cut(s)	747, 1477
Bsh1236I	CGCG	2 cut(s)	60, 119
BshFI	GGCC	8 cut(s)	57, 131, 155, 173, 222, 245, 277, 1482
BsiHKAI	GWGCWC	1 cut(s)	1345
BsiHKCI	CYCGRG	3 cut(s)	254, 848, 1257
BsiSI	CCGG	4 cut(s)	193, 232, 281, 1471
BslFI	GGGAC	1 cut(s)	128
BslI	CCNNNNNNNGG	2 cut(s)	400, 1477
BsmAI	GTCTC	4 cut(s)	106, 474, 1538, 1593
BsmFI	GGGAC	1 cut(s)	128
BsmI	GAATGC	2 cut(s)	1108, 1161
BsnI	GGCC	8 cut(s)	57, 131, 155, 173, 222, 245, 277, 1482
Bso31I	GGTCTC	2 cut(s)	106, 1538
BsoBI	CYCGRG	3 cut(s)	254, 848, 1257
Bsp119I	TTCGAA	2 cut(s)	1273, 1431
Bsp1286I	GDGCHC	3 cut(s)	768, 1345, 1371
Bsp143I	GATC	5 cut(s)	41, 250, 367, 1018, 1706
Bsp1720I	GCTNAGC	1 cut(s)	1319
BspACI	CCGC	9 cut(s)	58, 112, 152, 184, 187, 278, 325, 489, 1483
BspANI	GGCC	8 cut(s)	57, 131, 155, 173, 222, 245, 277, 1482
BspCNI	CTCAG	2 cut(s)	956, 1447
BspFNI	CGCG	2 cut(s)	60, 119
BspHI	TCATGA	1 cut(s)	1709
BspLI	GGNNCC	1 cut(s)	191
BspPI	GGATC	2 cut(s)	36, 1013
BspT104I	TTCGAA	2 cut(s)	1273, 1431
BspTI	CTTAAG	1 cut(s)	1549
BspTNI	GGTCTC	2 cut(s)	106, 1538
BsrFI	RCCGGY	1 cut(s)	231
BsrI	ACTGG	2 cut(s)	246, 1620
BssAI	RCCGGY	1 cut(s)	231
BssMI	GATC	5 cut(s)	41, 250, 367, 1018, 1706
Bst4CI	ACNGT	2 cut(s)	338, 1268
BstAFI	CTTAAG	1 cut(s)	1549
BstBI	TTCGAA	2 cut(s)	1273, 1431
BstC8I	GCNNGC	3 cut(s)	224, 745, 1242
BstDEI	CTNAG	5 cut(s)	157, 935, 943, 1319, 1455
BstF5I	GGATG	3 cut(s)	418, 1479, 1663
BstFNI	CGCG	2 cut(s)	60, 119
BstH2I	RGCGCY	1 cut(s)	110
BstHHI	GCGC	1 cut(s)	109
BstKTI	GATC	5 cut(s)	44, 253, 370, 1021, 1709
BstMAI	GTCTC	4 cut(s)	106, 474, 1538, 1593
BstMBI	GATC	5 cut(s)	41, 250, 367, 1018, 1706
BstMWI	GCNNNNNNNGC	5 cut(s)	161, 170, 184, 232, 569
BstUI	CGCG	2 cut(s)	60, 119
BstV1I	GCAGC	5 cut(s)	96, 106, 309, 331, 689
BstV2I	GAAGAC	1 cut(s)	40
BstX2I	RGATCY	1 cut(s)	250
BstYI	RGATCY	1 cut(s)	250
BsuRI	GGCC	8 cut(s)	57, 131, 155, 173, 222, 245, 277, 1482
BtgZI	GCGATG	2 cut(s)	75, 1344
BtsCI	GGATG	3 cut(s)	418, 1479, 1663
BtsI	GCAGTG	1 cut(s)	898
BtsIMutI	CAGTG	2 cut(s)	898, 1273
Cac8I	GCNNGC	3 cut(s)	224, 745, 1242
CciI	TCATGA	1 cut(s)	1709
CfoI	GCGC	1 cut(s)	109
Cfr10I	RCCGGY	1 cut(s)	231
Cfr13I	GGNCC	4 cut(s)	220, 229, 244, 1480
CseI	GACGC	1 cut(s)	125
Csp6I	GTAC	3 cut(s)	939, 1248, 1284
CspCI	CAANNNNNGTGG	2 cut(s)	1132, 1167
CviAII	CATG	4 cut(s)	22, 1129, 1202, 1710
CviQI	GTAC	3 cut(s)	939, 1248, 1284
DdeI	CTNAG	5 cut(s)	157, 935, 943, 1319, 1455
DpnI	GATC	5 cut(s)	43, 252, 369, 1020, 1708
DpnII	GATC	5 cut(s)	41, 250, 367, 1018, 1706
DraI	TTTAAA	1 cut(s)	498
EaeI	YGGCCR	1 cut(s)	55
EciI	GGCGGA	1 cut(s)	202
Eco24I	GRGCYC	2 cut(s)	768, 1371
Eco31I	GGTCTC	2 cut(s)	106, 1538
Eco47I	GGWCC	1 cut(s)	229
Eco57I	CTGAAG	6 cut(s)	200, 284, 686, 758, 899, 1581
Eco88I	CYCGRG	3 cut(s)	254, 848, 1257
EcoT38I	GRGCYC	2 cut(s)	768, 1371
FaeI	CATG	4 cut(s)	25, 1132, 1205, 1713
FalI	AAGNNNNNCTT	2 cut(s)	897, 929
FaqI	GGGAC	1 cut(s)	128
FatI	CATG	4 cut(s)	21, 1128, 1201, 1709
FauI	CCCGC	1 cut(s)	105
FokI	GGATG	3 cut(s)	425, 1486, 1670
FriOI	GRGCYC	2 cut(s)	768, 1371
FspBI	CTAG	3 cut(s)	578, 1401, 1496
GlaI	GCGC	1 cut(s)	108
GsaI	CCCAGC	2 cut(s)	751, 1481
GsuI	CTGGAG	3 cut(s)	407, 728, 989
HaeII	RGCGCY	1 cut(s)	110
HaeIII	GGCC	8 cut(s)	57, 131, 155, 173, 222, 245, 277, 1482
HapII	CCGG	4 cut(s)	193, 232, 281, 1471
HgaI	GACGC	1 cut(s)	125
HhaI	GCGC	1 cut(s)	109
Hin1II	CATG	4 cut(s)	25, 1132, 1205, 1713
Hin6I	GCGC	1 cut(s)	107
HinP1I	GCGC	1 cut(s)	107
HindIII	AAGCTT	1 cut(s)	962
HinfI	GANTC	9 cut(s)	4, 144, 532, 1490, 1531, 1610, 1616, 1649, 1679
HpaII	CCGG	4 cut(s)	193, 232, 281, 1471
HphI	GGTGA	5 cut(s)	301, 796, 860, 988, 1612
Hpy166II	GTNNAC	1 cut(s)	1695
Hpy188I	TCNGA	8 cut(s)	46, 264, 946, 1456, 1561, 1615, 1645, 1654
Hpy8I	GTNNAC	1 cut(s)	1695
Hpy99I	CGWCG	1 cut(s)	42
HpyAV	CCTTC	9 cut(s)	196, 202, 259, 280, 286, 458, 733, 790, 881
HpyCH4III	ACNGT	2 cut(s)	338, 1268
HpyCH4V	TGCA	9 cut(s)	553, 614, 677, 903, 1106, 1304, 1349, 1595, 1628
HpyF10VI	GCNNNNNNNGC	5 cut(s)	161, 170, 184, 232, 569
HpyF3I	CTNAG	5 cut(s)	157, 935, 943, 1319, 1455
Hsp92II	CATG	4 cut(s)	25, 1132, 1205, 1713
HspAI	GCGC	1 cut(s)	107
Kzo9I	GATC	5 cut(s)	41, 250, 367, 1018, 1706
LmnI	GCTCC	2 cut(s)	931, 1348
Lsp1109I	GCAGC	5 cut(s)	96, 106, 309, 331, 689
LweI	GCATC	4 cut(s)	1120, 1464, 1637, 1677
MaeI	CTAG	3 cut(s)	578, 1401, 1496
MaeIII	GTNAC	5 cut(s)	1189, 1403, 1421, 1487, 1535
MalI	GATC	5 cut(s)	43, 252, 369, 1020, 1708
MboI	GATC	5 cut(s)	41, 250, 367, 1018, 1706
MboII	GAAGA	5 cut(s)	45, 343, 799, 1287, 1574
MflI	RGATCY	1 cut(s)	250
MhlI	GDGCHC	3 cut(s)	768, 1345, 1371
MluI	ACGCGT	1 cut(s)	117
MlyI	GAGTC	3 cut(s)	1484, 1540, 1619
MroXI	GAANNNNTTC	1 cut(s)	441
MseI	TTAA	4 cut(s)	497, 893, 923, 1550
MspA1I	CMGCKG	4 cut(s)	97, 322, 706, 1485
MspCI	CTTAAG	1 cut(s)	1549
MspI	CCGG	4 cut(s)	193, 232, 281, 1471
Mva1269I	GAATGC	2 cut(s)	1108, 1161
MvnI	CGCG	2 cut(s)	60, 119
MwoI	GCNNNNNNNGC	5 cut(s)	161, 170, 184, 232, 569
NdeII	GATC	5 cut(s)	41, 250, 367, 1018, 1706
NlaIII	CATG	4 cut(s)	25, 1132, 1205, 1713
NlaIV	GGNNCC	1 cut(s)	191
NmeAIII	GCCGAG	4 cut(s)	83, 157, 199, 934
NmuCI	GTSAC	3 cut(s)	1421, 1487, 1535
NspV	TTCGAA	2 cut(s)	1273, 1431
PaeR7I	CTCGAG	3 cut(s)	254, 848, 1257
PagI	TCATGA	1 cut(s)	1709
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PctI	GAATGC	2 cut(s)	1108, 1161
PdmI	GAANNNNTTC	1 cut(s)	441
PfeI	GAWTC	5 cut(s)	144, 532, 1616, 1649, 1679
PleI	GAGTC	3 cut(s)	1484, 1539, 1618
PpsI	GAGTC	3 cut(s)	1484, 1539, 1618
PspFI	CCCAGC	2 cut(s)	747, 1477
PspN4I	GGNNCC	1 cut(s)	191
PspPI	GGNCC	4 cut(s)	220, 229, 244, 1480
PspXI	VCTCGAGB	2 cut(s)	848, 1257
PsuI	RGATCY	1 cut(s)	250
PvuII	CAGCTG	3 cut(s)	97, 322, 706
RsaI	GTAC	3 cut(s)	940, 1249, 1285
RsaNI	GTAC	3 cut(s)	939, 1248, 1284
SaqAI	TTAA	4 cut(s)	497, 893, 923, 1550
Sau3AI	GATC	5 cut(s)	41, 250, 367, 1018, 1706
Sau96I	GGNCC	4 cut(s)	220, 229, 244, 1480
ScaI	AGTACT	1 cut(s)	1249
SchI	GAGTC	3 cut(s)	1484, 1540, 1619
SduI	GDGCHC	3 cut(s)	768, 1345, 1371
SfaNI	GCATC	4 cut(s)	1120, 1464, 1637, 1677
Sfr274I	CTCGAG	3 cut(s)	254, 848, 1257
SfuI	TTCGAA	2 cut(s)	1273, 1431
SinI	GGWCC	1 cut(s)	229
SlaI	CTCGAG	3 cut(s)	254, 848, 1257
SmlI	CTYRAG	6 cut(s)	254, 620, 683, 848, 1257, 1549
SmoI	CTYRAG	6 cut(s)	254, 620, 683, 848, 1257, 1549
SsiI	CCGC	9 cut(s)	58, 112, 152, 184, 187, 278, 325, 489, 1483
SspMI	CTAG	3 cut(s)	578, 1401, 1496
TaaI	ACNGT	2 cut(s)	338, 1268
TaqII	GACCGA	1 cut(s)	597
TatI	WGTACW	1 cut(s)	1247
TauI	GCSGC	5 cut(s)	60, 155, 187, 280, 1485
TfiI	GAWTC	5 cut(s)	144, 532, 1616, 1649, 1679
Tru1I	TTAA	4 cut(s)	497, 893, 923, 1550
Tru9I	TTAA	4 cut(s)	497, 893, 923, 1550
TscAI	CASTG	2 cut(s)	905, 1273
TseFI	GTSAC	3 cut(s)	1421, 1487, 1535
TseI	GCWGC	5 cut(s)	94, 109, 319, 322, 677
Tsp45I	GTSAC	3 cut(s)	1421, 1487, 1535
TspDTI	ATGAA	5 cut(s)	78, 450, 477, 1017, 1377
TspGWI	ACGGA	1 cut(s)	558
TspRI	CASTG	2 cut(s)	905, 1273
Vha464I	CTTAAG	1 cut(s)	1549
VpaK11BI	GGWCC	1 cut(s)	229
XapI	RAATTY	5 cut(s)	396, 499, 555, 1276, 1360
XhoI	CTCGAG	3 cut(s)	254, 848, 1257
XmnI	GAANNNNTTC	1 cut(s)	441
XspI	CTAG	3 cut(s)	578, 1401, 1496
ZrmI	AGTACT	1 cut(s)	1249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.