Rh7CG156300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0015619
Physical Location & Seq
Forward (+)
12819161 .. 12823386
4226 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG156300.1

Sequence Viewer

Length: 1728 bp
ATGACTCAACCACTCTCTCCAACGGTTTGTGGAAGACGACGATCCTCCTCCGATCTGAGTTGCCGCGATGAAATAGAGGACAACAATCCAAGCATATCGCAGCTGGTCTCGGCGCTGCGGGACGCGTTTCAGGAGGCCGAGTTCGACAGAATCGAAGCGGCCTTAGTCGCCAGAGAGGCCGAGCTGAAGCGGCAGAACCTGATTCTGAGGGAGAAGGTCGAGTTGGCCCTGCTGGACCGGCTCAACCTGGCCCAAGATCTCGAGGCTCTGAAGGAGAGTAGGCCGCCGGAGAAGGTGAAGGAGGAGGACAAAGAGGTAATTTCGCAGCTGCGGAACAAGAACAGTCGATTAGAGATGGAAAAATTGAGGCTTGATCGTGAGTATGAGGCTCTGGAGAGCCGAATTTTGGGTTTAGAGGATGATACTACGAAATTGGTGAATGAAATGCTTCTGGGTTCAGGTAGAAATGAAGGAACGGGTATGAGAGACAATGGCAGTGTTGTAAATTTGGAGAATGTGTTTGAGTGTTTGATTGAGGCTCAGGCAAACGGAAATCTGCAAATTTCAGCAGGGGAAGCAAAGCTAGACCGAGTGATTGAGAAACAGAGGGAGGAGTATGCAACACTTGAGAAAAGGCACAAGTTTGAGATGGAGAAAATGCTAAAAGTTGAGAATGAGTTTGCAGCCCTCAAGAGAAAACACCAGCTTCAGCTGGAGGAAAAAGTCAAGGTTGAGAATGAGCTGAAGGCTTGCCGGGTAGAGATTGAGGGGCTCAAAGTTGAGAATGAGGTGAAGAAGTTGAAGGAAGTGCTAAAGGCAGTCGAGGAAAATCATAAGAGCGAGTATAAAGCACTCGAGCAAAAGCACCAATCTCACCTTCTGGGAGTTGAGAATGAGTTAAGGCACTGCAAAGCCGAGCTTCAGGGATTAAAGGAGGAGCAAAGTACCTCAGATGAGAAGTATGAGAAGCTTCTGGAGGAGGTGAATAAGCACAGGAAAGAGGAGAATGAAGTGGTCAATTTCGATCCCCAAAGGCAGAGCAAGGAGGTGGAGAGTGAGCCTAATGTGGTATTGGAGAACGAAATCTCTCGGTTAGATGAGTTTAGGAATGCAAAGCATCTTGGTTCAAAAAACATGGATAAGAGAAGCAAAAATAGTGGAATGCCAGATGGTAGTAGAAAACAGAAGTGTATTGTAACCCCTAACCATGTCATAAATGTAGAGAATGATTTTTGTGGTTCTGTGCCAGCGAGTACTTCCCCTCGAGGAAACAGTGTTCGAAATTCAGGTACTTCTAAATCTTCAAATGCAGACACCATTCTGCTTAGCGATAGCGATGATGATTGTGCTCCTGCAAAACAGCCAAAACTGAAAAATTTTGGGCTCAAAAGAAAACGAGCTTCATCTCCAAATGCTAGTAACAATAACAATGGTGGTCACAATTTCGAACGAGAGAGTTTCCCGACCTCTGAGAATAAGCAAAGCCGGATGCTGGGCCGTATTGACTCTCTAGTTGGTGGCTATGGAATACAAAATAACCCACCGAGTCATGACCAAGAGACCTTAAGACCATCTGAAGAAAAAGTAGAGGAAAAACATAAGCCTCCTGCAAAGGTGAATGGCGAGTCTGATTCCAGTTCTGCATCTATGTTCAGTTCTGATGATTCGGAGGATGACGATGACATCAATCTTGAATCAATGATGCTGTTCACAACAAACAGATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

575

Amino Acids

65.16

Weight (kDa)

5.35

Isoelectric Point (pI)

58.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 1263
AccII CGCG 2 cut(s) 66, 125
AciI CCGC 6 cut(s) 64, 118, 158, 190, 284, 331
AclWI GGATC 2 cut(s) 36, 1019
AcsI RAATTY 5 cut(s) 402, 505, 561, 1282, 1375
AcuI CTGAAG 6 cut(s) 206, 290, 692, 764, 905, 1596
AfaI GTAC 3 cut(s) 946, 1255, 1291
AfiI CCNNNNNNNGG 2 cut(s) 406, 1492
AflII CTTAAG 1 cut(s) 1564
AflIII ACRYGT 1 cut(s) 123
AgsI TTSAA 4 cut(s) 802, 1128, 1305, 1694
AjnI CCWGG 1 cut(s) 246
AjuI GAANNNNNNNTTGG 4 cut(s) 206, 238, 861, 893
AloI GAACNNNNNNTCC 4 cut(s) 125, 157, 1260, 1292
Alw21I GWGCWC 1 cut(s) 1351
Alw26I GTCTC 3 cut(s) 112, 480, 1553
AlwI GGATC 2 cut(s) 36, 1019
AlwNI CAGNNNCTG 1 cut(s) 199
Ama87I CYCGRG 3 cut(s) 260, 854, 1263
AoxI GGCC 7 cut(s) 135, 159, 177, 225, 249, 281, 1495
ApeKI GCWGC 5 cut(s) 100, 115, 325, 328, 683
ApoI RAATTY 5 cut(s) 402, 505, 561, 1282, 1375
Asp700I GAANNNNTTC 1 cut(s) 447
AspLEI GCGC 1 cut(s) 115
AspS9I GGNCC 4 cut(s) 226, 235, 250, 1495
AsuC2I CCSGG 1 cut(s) 755
AsuHPI GGTGA 6 cut(s) 307, 448, 802, 866, 994, 1627
AsuII TTCGAA 2 cut(s) 1279, 1446
AvaI CYCGRG 3 cut(s) 260, 854, 1263
AvaII GGWCC 1 cut(s) 235
BanII GRGCYC 2 cut(s) 774, 1386
BbsI GAAGAC 1 cut(s) 40
Bbv12I GWGCWC 1 cut(s) 1351
BbvI GCAGC 5 cut(s) 102, 112, 315, 337, 695
BccI CCATC 4 cut(s) 349, 643, 1163, 1579
BceAI ACGGC 1 cut(s) 1482
BciT130I CCWGG 1 cut(s) 248
BcnI CCSGG 1 cut(s) 755
BcoDI GTCTC 3 cut(s) 112, 480, 1553
BfaI CTAG 3 cut(s) 584, 1416, 1511
BfoI RGCGCY 1 cut(s) 116
BfrI CTTAAG 1 cut(s) 1564
BglI GCCNNNNNGGC 1 cut(s) 176
BglII AGATCT 1 cut(s) 256
BisI GCNGC 9 cut(s) 64, 101, 116, 159, 191, 284, 326, 329, 684
BlpI GCTNAGC 1 cut(s) 1325
BlsI GCNGC 9 cut(s) 65, 102, 117, 160, 192, 285, 327, 330, 685
BmcAI AGTACT 1 cut(s) 1255
Bme1390I CCNGG 2 cut(s) 248, 755
Bme18I GGWCC 1 cut(s) 235
BmeT110I CYCGRG 3 cut(s) 260, 854, 1263
BmgT120I GGNCC 4 cut(s) 226, 235, 250, 1495
BmrFI CCNGG 2 cut(s) 248, 755
BmsI GCATC 4 cut(s) 1126, 1479, 1652, 1692
BpiI GAAGAC 1 cut(s) 40
BpmI CTGGAG 3 cut(s) 413, 734, 995
Bpu10I CCTNAGC 1 cut(s) 540
Bpu1102I GCTNAGC 1 cut(s) 1325
Bpu14I TTCGAA 2 cut(s) 1279, 1446
BpuEI CTTGAG 2 cut(s) 647, 674
BpuMI CCSGG 1 cut(s) 755
BsaI GGTCTC 2 cut(s) 112, 1553
BsaXI ACNNNNNCTCC 4 cut(s) 125, 155, 503, 533
Bsc4I CCNNNNNNNGG 2 cut(s) 406, 1492
Bse118I RCCGGY 1 cut(s) 237
Bse1I ACTGG 1 cut(s) 1635
BseBI CCWGG 1 cut(s) 248
BseGI GGATG 3 cut(s) 424, 1494, 1678
BseLI CCNNNNNNNGG 2 cut(s) 406, 1492
BseMII CTCAG 5 cut(s) 47, 197, 554, 963, 1461
BseNI ACTGG 1 cut(s) 1635
BseRI GAGGAG 6 cut(s) 37, 317, 626, 950, 992, 1016
BseXI GCAGC 5 cut(s) 102, 112, 315, 337, 695
BseYI CCCAGC 1 cut(s) 1492
Bsh1236I CGCG 2 cut(s) 66, 125
BshFI GGCC 7 cut(s) 137, 161, 179, 227, 251, 283, 1497
BsiHKAI GWGCWC 1 cut(s) 1351
BsiHKCI CYCGRG 3 cut(s) 260, 854, 1263
BsiSI CCGG 4 cut(s) 238, 287, 754, 1486
BslFI GGGAC 1 cut(s) 134
BslI CCNNNNNNNGG 2 cut(s) 406, 1492
BsmAI GTCTC 3 cut(s) 112, 480, 1553
BsmFI GGGAC 1 cut(s) 134
BsmI GAATGC 2 cut(s) 1114, 1167
BsnI GGCC 7 cut(s) 137, 161, 179, 227, 251, 283, 1497
Bso31I GGTCTC 2 cut(s) 112, 1553
BsoBI CYCGRG 3 cut(s) 260, 854, 1263
Bsp119I TTCGAA 2 cut(s) 1279, 1446
Bsp1286I GDGCHC 3 cut(s) 774, 1351, 1386
Bsp143I GATC 6 cut(s) 41, 52, 256, 373, 1024, 1721
Bsp1720I GCTNAGC 1 cut(s) 1325
BspACI CCGC 6 cut(s) 64, 118, 158, 190, 284, 331
BspANI GGCC 7 cut(s) 137, 161, 179, 227, 251, 283, 1497
BspCNI CTCAG 5 cut(s) 48, 198, 553, 962, 1462
BspFNI CGCG 2 cut(s) 66, 125
BspHI TCATGA 2 cut(s) 1549, 1724
BspPI GGATC 2 cut(s) 36, 1019
BspT104I TTCGAA 2 cut(s) 1279, 1446
BspTI CTTAAG 1 cut(s) 1564
BspTNI GGTCTC 2 cut(s) 112, 1553
BsrFI RCCGGY 1 cut(s) 237
BsrI ACTGG 1 cut(s) 1635
BssAI RCCGGY 1 cut(s) 237
BssMI GATC 6 cut(s) 41, 52, 256, 373, 1024, 1721
Bst2UI CCWGG 1 cut(s) 248
Bst4CI ACNGT 3 cut(s) 25, 344, 1274
BstAFI CTTAAG 1 cut(s) 1564
BstBI TTCGAA 2 cut(s) 1279, 1446
BstC8I GCNNGC 2 cut(s) 751, 1248
BstDEI CTNAG 7 cut(s) 56, 163, 206, 540, 949, 1325, 1470
BstF5I GGATG 3 cut(s) 424, 1494, 1678
BstFNI CGCG 2 cut(s) 66, 125
BstH2I RGCGCY 1 cut(s) 116
BstHHI GCGC 1 cut(s) 115
BstKTI GATC 6 cut(s) 44, 55, 259, 376, 1027, 1724
BstMAI GTCTC 3 cut(s) 112, 480, 1553
BstMBI GATC 6 cut(s) 41, 52, 256, 373, 1024, 1721
BstMWI GCNNNNNNNGC 5 cut(s) 167, 176, 190, 238, 575
BstNI CCWGG 1 cut(s) 248
BstSCI CCNGG 2 cut(s) 246, 753
BstUI CGCG 2 cut(s) 66, 125
BstV1I GCAGC 5 cut(s) 102, 112, 315, 337, 695
BstV2I GAAGAC 1 cut(s) 40
BstX2I RGATCY 1 cut(s) 256
BstYI RGATCY 1 cut(s) 256
BsuRI GGCC 7 cut(s) 137, 161, 179, 227, 251, 283, 1497
BtgZI GCGATG 2 cut(s) 81, 1350
BtsCI GGATG 3 cut(s) 424, 1494, 1678
BtsI GCAGTG 2 cut(s) 502, 904
BtsIMutI CAGTG 3 cut(s) 502, 904, 1279
Cac8I GCNNGC 2 cut(s) 751, 1248
CaiI CAGNNNCTG 1 cut(s) 199
CciI TCATGA 2 cut(s) 1549, 1724
CfoI GCGC 1 cut(s) 115
Cfr10I RCCGGY 1 cut(s) 237
Cfr13I GGNCC 4 cut(s) 226, 235, 250, 1495
CseI GACGC 1 cut(s) 131
Csp6I GTAC 3 cut(s) 945, 1254, 1290
CspCI CAANNNNNGTGG 2 cut(s) 1138, 1173
CviAII CATG 4 cut(s) 1135, 1208, 1550, 1725
CviQI GTAC 3 cut(s) 945, 1254, 1290
DdeI CTNAG 7 cut(s) 56, 163, 206, 540, 949, 1325, 1470
DpnI GATC 6 cut(s) 43, 54, 258, 375, 1026, 1723
DpnII GATC 6 cut(s) 41, 52, 256, 373, 1024, 1721
Eco24I GRGCYC 2 cut(s) 774, 1386
Eco31I GGTCTC 2 cut(s) 112, 1553
Eco47I GGWCC 1 cut(s) 235
Eco57I CTGAAG 6 cut(s) 206, 290, 692, 764, 905, 1596
Eco88I CYCGRG 3 cut(s) 260, 854, 1263
EcoRII CCWGG 1 cut(s) 246
EcoT38I GRGCYC 2 cut(s) 774, 1386
FaeI CATG 4 cut(s) 1138, 1211, 1553, 1728
FalI AAGNNNNNCTT 2 cut(s) 903, 935
FaqI GGGAC 1 cut(s) 134
FatI CATG 4 cut(s) 1134, 1207, 1549, 1724
FauI CCCGC 1 cut(s) 111
Fnu4HI GCNGC 9 cut(s) 64, 101, 116, 159, 191, 284, 326, 329, 684
FokI GGATG 3 cut(s) 431, 1501, 1685
FriOI GRGCYC 2 cut(s) 774, 1386
Fsp4HI GCNGC 9 cut(s) 64, 101, 116, 159, 191, 284, 326, 329, 684
FspBI CTAG 3 cut(s) 584, 1416, 1511
GlaI GCGC 1 cut(s) 114
GluI GCNGC 9 cut(s) 64, 101, 116, 159, 191, 284, 326, 329, 684
GsaI CCCAGC 1 cut(s) 1496
GsuI CTGGAG 3 cut(s) 413, 734, 995
HaeII RGCGCY 1 cut(s) 116
HaeIII GGCC 7 cut(s) 137, 161, 179, 227, 251, 283, 1497
HapII CCGG 4 cut(s) 238, 287, 754, 1486
HgaI GACGC 1 cut(s) 131
HhaI GCGC 1 cut(s) 115
Hin1II CATG 4 cut(s) 1138, 1211, 1553, 1728
Hin6I GCGC 1 cut(s) 113
HinP1I GCGC 1 cut(s) 113
HindIII AAGCTT 1 cut(s) 968
HinfI GANTC 9 cut(s) 4, 150, 202, 1505, 1546, 1625, 1631, 1664, 1694
HpaII CCGG 4 cut(s) 238, 287, 754, 1486
HphI GGTGA 6 cut(s) 307, 448, 802, 866, 994, 1627
Hpy166II GTNNAC 1 cut(s) 1710
Hpy8I GTNNAC 1 cut(s) 1710
Hpy99I CGWCG 1 cut(s) 42
HpyAV CCTTC 8 cut(s) 208, 265, 286, 292, 464, 739, 796, 887
HpyCH4III ACNGT 3 cut(s) 25, 344, 1274
HpyCH4V TGCA 9 cut(s) 559, 620, 683, 909, 1112, 1310, 1355, 1610, 1643
HpyF10VI GCNNNNNNNGC 5 cut(s) 167, 176, 190, 238, 575
HpyF3I CTNAG 7 cut(s) 56, 163, 206, 540, 949, 1325, 1470
Hsp92II CATG 4 cut(s) 1138, 1211, 1553, 1728
HspAI GCGC 1 cut(s) 113
Kzo9I GATC 6 cut(s) 41, 52, 256, 373, 1024, 1721
LmnI GCTCC 2 cut(s) 937, 1354
Lsp1109I GCAGC 5 cut(s) 102, 112, 315, 337, 695
LweI GCATC 4 cut(s) 1126, 1479, 1652, 1692
MaeI CTAG 3 cut(s) 584, 1416, 1511
MaeIII GTNAC 3 cut(s) 1195, 1418, 1436
MalI GATC 6 cut(s) 43, 54, 258, 375, 1026, 1723
MboI GATC 6 cut(s) 41, 52, 256, 373, 1024, 1721
MboII GAAGA 4 cut(s) 45, 805, 1293, 1589
MflI RGATCY 1 cut(s) 256
MhlI GDGCHC 3 cut(s) 774, 1351, 1386
MluI ACGCGT 1 cut(s) 123
MlyI GAGTC 3 cut(s) 1499, 1555, 1634
MmeI TCCRAC 1 cut(s) 44
MroXI GAANNNNTTC 1 cut(s) 447
MseI TTAA 3 cut(s) 899, 929, 1565
MspA1I CMGCKG 3 cut(s) 103, 328, 712
MspCI CTTAAG 1 cut(s) 1564
MspI CCGG 4 cut(s) 238, 287, 754, 1486
MspR9I CCNGG 2 cut(s) 248, 755
Mva1269I GAATGC 2 cut(s) 1114, 1167
MvaI CCWGG 1 cut(s) 248
MvnI CGCG 2 cut(s) 66, 125
MwoI GCNNNNNNNGC 5 cut(s) 167, 176, 190, 238, 575
NciI CCSGG 1 cut(s) 755
NdeII GATC 6 cut(s) 41, 52, 256, 373, 1024, 1721
NlaIII CATG 4 cut(s) 1138, 1211, 1553, 1728
NmeAIII GCCGAG 4 cut(s) 89, 163, 205, 940
NmuCI GTSAC 1 cut(s) 1436
NspV TTCGAA 2 cut(s) 1279, 1446
PaeR7I CTCGAG 3 cut(s) 260, 854, 1263
PagI TCATGA 2 cut(s) 1549, 1724
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PctI GAATGC 2 cut(s) 1114, 1167
PdmI GAANNNNTTC 1 cut(s) 447
PfeI GAWTC 5 cut(s) 150, 202, 1631, 1664, 1694
PkrI GCNGC 9 cut(s) 65, 102, 117, 160, 192, 285, 327, 330, 685
PleI GAGTC 3 cut(s) 1499, 1554, 1633
PpsI GAGTC 3 cut(s) 1499, 1554, 1633
Psp6I CCWGG 1 cut(s) 246
PspFI CCCAGC 1 cut(s) 1492
PspGI CCWGG 1 cut(s) 246
PspPI GGNCC 4 cut(s) 226, 235, 250, 1495
PspXI VCTCGAGB 2 cut(s) 854, 1263
PstNI CAGNNNCTG 1 cut(s) 199
PsuI RGATCY 1 cut(s) 256
PvuII CAGCTG 3 cut(s) 103, 328, 712
RsaI GTAC 3 cut(s) 946, 1255, 1291
RsaNI GTAC 3 cut(s) 945, 1254, 1290
SaqAI TTAA 3 cut(s) 899, 929, 1565
SatI GCNGC 9 cut(s) 64, 101, 116, 159, 191, 284, 326, 329, 684
Sau3AI GATC 6 cut(s) 41, 52, 256, 373, 1024, 1721
Sau96I GGNCC 4 cut(s) 226, 235, 250, 1495
ScaI AGTACT 1 cut(s) 1255
SchI GAGTC 3 cut(s) 1499, 1555, 1634
ScrFI CCNGG 2 cut(s) 248, 755
SduI GDGCHC 3 cut(s) 774, 1351, 1386
SfaNI GCATC 4 cut(s) 1126, 1479, 1652, 1692
Sfr274I CTCGAG 3 cut(s) 260, 854, 1263
SfuI TTCGAA 2 cut(s) 1279, 1446
SinI GGWCC 1 cut(s) 235
SlaI CTCGAG 3 cut(s) 260, 854, 1263
SmlI CTYRAG 6 cut(s) 260, 626, 689, 854, 1263, 1564
SmoI CTYRAG 6 cut(s) 260, 626, 689, 854, 1263, 1564
SsiI CCGC 6 cut(s) 64, 118, 158, 190, 284, 331
SspMI CTAG 3 cut(s) 584, 1416, 1511
StyD4I CCNGG 2 cut(s) 246, 753
TaaI ACNGT 3 cut(s) 25, 344, 1274
TaqII GACCGA 1 cut(s) 603
TatI WGTACW 1 cut(s) 1253
TauI GCSGC 4 cut(s) 66, 161, 193, 286
TfiI GAWTC 5 cut(s) 150, 202, 1631, 1664, 1694
Tru1I TTAA 3 cut(s) 899, 929, 1565
Tru9I TTAA 3 cut(s) 899, 929, 1565
TscAI CASTG 3 cut(s) 502, 911, 1279
TseFI GTSAC 1 cut(s) 1436
TseI GCWGC 5 cut(s) 100, 115, 325, 328, 683
Tsp45I GTSAC 1 cut(s) 1436
TspDTI ATGAA 5 cut(s) 84, 456, 483, 1023, 1392
TspGWI ACGGA 1 cut(s) 564
TspRI CASTG 3 cut(s) 502, 911, 1279
Vha464I CTTAAG 1 cut(s) 1564
VpaK11BI GGWCC 1 cut(s) 235
XapI RAATTY 5 cut(s) 402, 505, 561, 1282, 1375
XhoI CTCGAG 3 cut(s) 260, 854, 1263
XmnI GAANNNNTTC 1 cut(s) 447
XspI CTAG 3 cut(s) 584, 1416, 1511
ZrmI AGTACT 1 cut(s) 1255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.