Transcription initiation factor
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g39300 |
| rosa_chinensis | RchiOBHm_Chr7g0241511 RchiOBHm_Chr7g0241691 |
| rosa_laevigata | RLG00000000553 RLG00000000574 |
| rosa_multiflora | Rmu_co8351453.1_g000001 Rmu_sc0002268.1_g000006 Rmu_sc0026340.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00218810 |
| rosa_rugosa | Rorug03G0267400 Rorug07G0344500 Rorug07G0346400 |
| rosa_samantha | Rh7AG500900 Rh7BG469700 Rh7BG472100 Rh7CG517300 Rh7DG485800 |
| rosa_wichuraiana | Rw7G042320 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 146 |
| AciI | CCGC | 1 cut(s) | 363 |
| AcsI | RAATTY | 1 cut(s) | 329 |
| AgsI | TTSAA | 1 cut(s) | 280 |
| AluBI | AGCT | 2 cut(s) | 311, 391 |
| AluI | AGCT | 2 cut(s) | 311, 391 |
| Alw21I | GWGCWC | 1 cut(s) | 318 |
| Alw44I | GTGCAC | 1 cut(s) | 314 |
| ApaLI | GTGCAC | 1 cut(s) | 314 |
| ApeKI | GCWGC | 3 cut(s) | 77, 299, 365 |
| ApoI | RAATTY | 1 cut(s) | 329 |
| BaeGI | GKGCMC | 1 cut(s) | 318 |
| BanII | GRGCYC | 1 cut(s) | 350 |
| BbsI | GAAGAC | 1 cut(s) | 114 |
| Bbv12I | GWGCWC | 1 cut(s) | 318 |
| BbvI | GCAGC | 3 cut(s) | 64, 311, 377 |
| BceAI | ACGGC | 1 cut(s) | 205 |
| BfaI | CTAG | 1 cut(s) | 240 |
| BisI | GCNGC | 4 cut(s) | 78, 300, 363, 366 |
| BlsI | GCNGC | 4 cut(s) | 79, 301, 364, 367 |
| BmiI | GGNNCC | 2 cut(s) | 154, 347 |
| BmrI | ACTGGG | 1 cut(s) | 212 |
| BmsI | GCATC | 2 cut(s) | 55, 387 |
| BmuI | ACTGGG | 1 cut(s) | 212 |
| BpiI | GAAGAC | 1 cut(s) | 114 |
| BpuEI | CTTGAG | 1 cut(s) | 110 |
| Bsa29I | ATCGAT | 1 cut(s) | 356 |
| BsaBI | GATNNNNATC | 1 cut(s) | 377 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 206, 236 |
| Bse1I | ACTGG | 1 cut(s) | 207 |
| Bse3DI | GCAATG | 1 cut(s) | 90 |
| Bse8I | GATNNNNATC | 1 cut(s) | 377 |
| BseCI | ATCGAT | 1 cut(s) | 356 |
| BseJI | GATNNNNATC | 1 cut(s) | 377 |
| BseMI | GCAATG | 1 cut(s) | 90 |
| BseMII | CTCAG | 1 cut(s) | 401 |
| BseNI | ACTGG | 1 cut(s) | 207 |
| BseRI | GAGGAG | 1 cut(s) | 358 |
| BseSI | GKGCMC | 1 cut(s) | 318 |
| BseXI | GCAGC | 3 cut(s) | 64, 311, 377 |
| Bsh1236I | CGCG | 1 cut(s) | 146 |
| BshVI | ATCGAT | 1 cut(s) | 356 |
| BsiHKAI | GWGCWC | 1 cut(s) | 318 |
| BslFI | GGGAC | 1 cut(s) | 257 |
| BsmFI | GGGAC | 1 cut(s) | 257 |
| Bsp1286I | GDGCHC | 2 cut(s) | 318, 350 |
| Bsp68I | TCGCGA | 1 cut(s) | 146 |
| BspACI | CCGC | 1 cut(s) | 363 |
| BspCNI | CTCAG | 1 cut(s) | 400 |
| BspDI | ATCGAT | 1 cut(s) | 356 |
| BspFNI | CGCG | 1 cut(s) | 146 |
| BspLI | GGNNCC | 2 cut(s) | 154, 347 |
| BsrDI | GCAATG | 1 cut(s) | 90 |
| BsrI | ACTGG | 1 cut(s) | 207 |
| BstC8I | GCNNGC | 1 cut(s) | 82 |
| BstDEI | CTNAG | 1 cut(s) | 387 |
| BstFNI | CGCG | 1 cut(s) | 146 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 74, 152, 296, 308, 322 |
| BstSLI | GKGCMC | 1 cut(s) | 318 |
| BstUI | CGCG | 1 cut(s) | 146 |
| BstV1I | GCAGC | 3 cut(s) | 64, 311, 377 |
| BstV2I | GAAGAC | 1 cut(s) | 114 |
| Bsu15I | ATCGAT | 1 cut(s) | 356 |
| BsuTUI | ATCGAT | 1 cut(s) | 356 |
| BtsI | GCAGTG | 1 cut(s) | 375 |
| BtsIMutI | CAGTG | 1 cut(s) | 375 |
| BtuMI | TCGCGA | 1 cut(s) | 146 |
| Cac8I | GCNNGC | 1 cut(s) | 82 |
| ClaI | ATCGAT | 1 cut(s) | 356 |
| DdeI | CTNAG | 1 cut(s) | 387 |
| Eco24I | GRGCYC | 1 cut(s) | 350 |
| Eco32I | GATATC | 1 cut(s) | 426 |
| EcoRV | GATATC | 1 cut(s) | 426 |
| EcoT22I | ATGCAT | 1 cut(s) | 70 |
| EcoT38I | GRGCYC | 1 cut(s) | 350 |
| FaiI | YATR | 4 cut(s) | 191, 249, 251, 338 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 119, 151 |
| FaqI | GGGAC | 1 cut(s) | 257 |
| Fnu4HI | GCNGC | 4 cut(s) | 78, 300, 363, 366 |
| FriOI | GRGCYC | 1 cut(s) | 350 |
| Fsp4HI | GCNGC | 4 cut(s) | 78, 300, 363, 366 |
| FspBI | CTAG | 1 cut(s) | 240 |
| GluI | GCNGC | 4 cut(s) | 78, 300, 363, 366 |
| HinfI | GANTC | 1 cut(s) | 258 |
| Hpy166II | GTNNAC | 2 cut(s) | 101, 316 |
| Hpy188I | TCNGA | 1 cut(s) | 397 |
| Hpy188III | TCNNGA | 1 cut(s) | 145 |
| Hpy8I | GTNNAC | 2 cut(s) | 101, 316 |
| Hpy99I | CGWCG | 1 cut(s) | 146 |
| HpyCH4IV | ACGT | 1 cut(s) | 434 |
| HpyCH4V | TGCA | 4 cut(s) | 4, 68, 316, 378 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 74, 152, 296, 308, 322 |
| HpyF3I | CTNAG | 1 cut(s) | 387 |
| HpySE526I | ACGT | 1 cut(s) | 434 |
| LmnI | GCTCC | 2 cut(s) | 152, 345 |
| LpnPI | CCDG | 4 cut(s) | 130, 188, 363, 425 |
| Lsp1109I | GCAGC | 3 cut(s) | 64, 311, 377 |
| LweI | GCATC | 2 cut(s) | 55, 387 |
| MaeI | CTAG | 1 cut(s) | 240 |
| MaeII | ACGT | 1 cut(s) | 434 |
| MaeIII | GTNAC | 3 cut(s) | 222, 403, 435 |
| MboII | GAAGA | 3 cut(s) | 66, 119, 127 |
| MhlI | GDGCHC | 2 cut(s) | 318, 350 |
| MluCI | AATT | 1 cut(s) | 329 |
| MnlI | CCTC | 5 cut(s) | 166, 246, 277, 336, 425 |
| Mph1103I | ATGCAT | 1 cut(s) | 70 |
| MseI | TTAA | 1 cut(s) | 209 |
| MvnI | CGCG | 1 cut(s) | 146 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 74, 152, 296, 308, 322 |
| NlaIV | GGNNCC | 2 cut(s) | 154, 347 |
| NruI | TCGCGA | 1 cut(s) | 146 |
| NsiI | ATGCAT | 1 cut(s) | 70 |
| PfeI | GAWTC | 1 cut(s) | 258 |
| PkrI | GCNGC | 4 cut(s) | 79, 301, 364, 367 |
| PspN4I | GGNNCC | 2 cut(s) | 154, 347 |
| RruI | TCGCGA | 1 cut(s) | 146 |
| SaqAI | TTAA | 1 cut(s) | 209 |
| SatI | GCNGC | 4 cut(s) | 78, 300, 363, 366 |
| SduI | GDGCHC | 2 cut(s) | 318, 350 |
| SetI | ASST | 3 cut(s) | 313, 393, 437 |
| SfaNI | GCATC | 2 cut(s) | 55, 387 |
| SmlI | CTYRAG | 1 cut(s) | 125 |
| SmoI | CTYRAG | 1 cut(s) | 125 |
| Sse9I | AATT | 1 cut(s) | 329 |
| SsiI | CCGC | 1 cut(s) | 363 |
| SspMI | CTAG | 1 cut(s) | 240 |
| TaiI | ACGT | 1 cut(s) | 437 |
| TaqI | TCGA | 1 cut(s) | 356 |
| TasI | AATT | 1 cut(s) | 329 |
| TauI | GCSGC | 1 cut(s) | 365 |
| TfiI | GAWTC | 1 cut(s) | 258 |
| Tru1I | TTAA | 1 cut(s) | 209 |
| Tru9I | TTAA | 1 cut(s) | 209 |
| TscAI | CASTG | 1 cut(s) | 375 |
| TseI | GCWGC | 3 cut(s) | 77, 299, 365 |
| TspGWI | ACGGA | 1 cut(s) | 130 |
| TspRI | CASTG | 1 cut(s) | 375 |
| VneI | GTGCAC | 1 cut(s) | 314 |
| XapI | RAATTY | 1 cut(s) | 329 |
| XspI | CTAG | 1 cut(s) | 240 |
| Zsp2I | ATGCAT | 1 cut(s) | 70 |