Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8351453.1

Orthogroup ID

OG0013689

Physical Location & Seq

Genomic Coordinates Forward (+)

395 .. 1044

Gene Structure 650 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8351453.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 650 bp

atggattgccacgaatgccgcttccaaaccgatgtggtgttcgaccactccaccggcgacgccgtctgcaaaaactgcggcttagtgctcgagtcccactacatcgacgagaccaacgagtggcgaaccttcgccgacgacaatactcgcgacgaccccaaccgtgttggtgctgcagccaacccactattgtccggtggcggactgtccaccgtcatggccaagcccaacggagaggtcctccgtgctccgaatagggatccggaccggggcttgataatggccttcaaaaccatcgagaccatgtgtgataggttgggccttgtttccaccatcaagaaccgggcaaatgagatgtacaagactcttgaagatcataagtgtagcaagggaagaaaccaagatgcattattggctgcttgcctatacattgcttgtaaacatgaagaaaagcccagaactctcaaggaaatcttctccgtcgcgaatggagcctcaaagaaagagattggtagagcaaaggaatacataatcaagcaactggggttaatggagaagccatttcaagtagcaaatgctgggaactatatgaggcgattctgttcctctcttggcttgaacaatcaagcaatcaaagcagctcaacaagc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03022 ko05169 ko05203 map03022 map05169 map05203

Pfam Domains

Protein Families

TFIIB TF_Zn_Ribbon

Protein Analysis

217

Amino Acids

24.09

Weight (kDa)

8.04

Isoelectric Point (pI)

32.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013689)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g39300
rosa_chinensis	RchiOBHm_Chr7g0241511 RchiOBHm_Chr7g0241691
rosa_laevigata	RLG00000000553 RLG00000000574
rosa_multiflora	Rmu_co8351453.1_g000001 Rmu_sc0002268.1_g000006 Rmu_sc0026340.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218810
rosa_rugosa	Rorug03G0267400 Rorug07G0344500 Rorug07G0346400
rosa_samantha	Rh7AG500900 Rh7BG469700 Rh7BG472100 Rh7CG517300 Rh7DG485800
rosa_wichuraiana	Rw7G042320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	120
AccII	CGCG	2 cut(s)	150, 485
AccIII	TCCGGA	1 cut(s)	262
AciI	CCGC	3 cut(s)	19, 78, 201
AclWI	GGATC	2 cut(s)	254, 267
AcoI	YGGCCR	1 cut(s)	219
AcyI	GRCGYC	1 cut(s)	60
AfaI	GTAC	1 cut(s)	359
AfiI	CCNNNNNNNGG	2 cut(s)	120, 269
AgsI	TTSAA	4 cut(s)	289, 371, 566, 619
AluBI	AGCT	1 cut(s)	641
AluI	AGCT	1 cut(s)	641
Alw21I	GWGCWC	2 cut(s)	90, 250
Alw26I	GTCTC	2 cut(s)	104, 293
AlwI	GGATC	2 cut(s)	254, 267
Ama87I	CYCGRG	1 cut(s)	89
Aor13HI	TCCGGA	1 cut(s)	262
AoxI	GGCC	3 cut(s)	219, 282, 319
ApeKI	GCWGC	4 cut(s)	173, 176, 416, 638
AspS9I	GGNCC	3 cut(s)	238, 265, 319
AsuC2I	CCSGG	2 cut(s)	269, 344
AvaI	CYCGRG	1 cut(s)	89
AvaII	GGWCC	2 cut(s)	238, 265
BalI	TGGCCA	1 cut(s)	221
BamHI	GGATCC	1 cut(s)	259
Bbv12I	GWGCWC	2 cut(s)	90, 250
BbvI	GCAGC	3 cut(s)	160, 188, 403
BccI	CCATC	2 cut(s)	302, 341
BceAI	ACGGC	1 cut(s)	47
BcnI	CCSGG	2 cut(s)	269, 344
BcoDI	GTCTC	2 cut(s)	104, 293
BfmI	CTRYAG	1 cut(s)	174
BisI	GCNGC	6 cut(s)	19, 79, 174, 177, 417, 639
BlsI	GCNGC	6 cut(s)	20, 80, 175, 178, 418, 640
Bme1390I	CCNGG	2 cut(s)	269, 344
Bme18I	GGWCC	2 cut(s)	238, 265
BmeT110I	CYCGRG	1 cut(s)	89
BmgT120I	GGNCC	3 cut(s)	238, 265, 319
BmiI	GGNNCC	2 cut(s)	261, 493
BmrFI	CCNGG	2 cut(s)	269, 344
BmrI	ACTGGG	1 cut(s)	551
BmsI	GCATC	1 cut(s)	394
BmuI	ACTGGG	1 cut(s)	551
BplI	GAGNNNNNCTC	2 cut(s)	225, 257
BpuEI	CTTGAG	1 cut(s)	449
BpuMI	CCSGG	2 cut(s)	269, 344
BsaHI	GRCGYC	1 cut(s)	60
BsaI	GGTCTC	2 cut(s)	104, 293
BsaJI	CCNNGG	1 cut(s)	268
BsaWI	WCCGGW	2 cut(s)	194, 262
Bsc4I	CCNNNNNNNGG	2 cut(s)	120, 269
Bse118I	RCCGGY	1 cut(s)	53
Bse1I	ACTGG	1 cut(s)	546
Bse3DI	GCAATG	1 cut(s)	429
BseAI	TCCGGA	1 cut(s)	262
BseDI	CCNNGG	1 cut(s)	268
BseLI	CCNNNNNNNGG	2 cut(s)	120, 269
BseMI	GCAATG	1 cut(s)	429
BseNI	ACTGG	1 cut(s)	546
BseXI	GCAGC	3 cut(s)	160, 188, 403
BseYI	CCCAGC	1 cut(s)	578
Bsh1236I	CGCG	2 cut(s)	150, 485
BshFI	GGCC	3 cut(s)	221, 284, 321
BsiHKAI	GWGCWC	2 cut(s)	90, 250
BsiHKCI	CYCGRG	1 cut(s)	89
BsiSI	CCGG	5 cut(s)	54, 195, 263, 268, 343
BslFI	GGGAC	1 cut(s)	79
BslI	CCNNNNNNNGG	2 cut(s)	120, 269
BsmAI	GTCTC	2 cut(s)	104, 293
BsmFI	GGGAC	1 cut(s)	79
BsmI	GAATGC	1 cut(s)	20
BsnI	GGCC	3 cut(s)	221, 284, 321
Bso31I	GGTCTC	2 cut(s)	104, 293
BsoBI	CYCGRG	1 cut(s)	89
Bsp1286I	GDGCHC	2 cut(s)	90, 250
Bsp13I	TCCGGA	1 cut(s)	262
Bsp1407I	TGTACA	1 cut(s)	357
Bsp143I	GATC	2 cut(s)	259, 373
Bsp68I	TCGCGA	2 cut(s)	150, 485
BspACI	CCGC	3 cut(s)	19, 78, 201
BspANI	GGCC	3 cut(s)	221, 284, 321
BspEI	TCCGGA	1 cut(s)	262
BspFNI	CGCG	2 cut(s)	150, 485
BspLI	GGNNCC	2 cut(s)	261, 493
BspMAI	CTGCAG	1 cut(s)	178
BspPI	GGATC	2 cut(s)	254, 267
BspTNI	GGTCTC	2 cut(s)	104, 293
BsrDI	GCAATG	1 cut(s)	429
BsrFI	RCCGGY	1 cut(s)	53
BsrGI	TGTACA	1 cut(s)	357
BsrI	ACTGG	1 cut(s)	546
BssAI	RCCGGY	1 cut(s)	53
BssECI	CCNNGG	1 cut(s)	268
BssMI	GATC	2 cut(s)	259, 373
BssNI	GRCGYC	1 cut(s)	60
Bst4CI	ACNGT	3 cut(s)	164, 207, 214
BstACI	GRCGYC	1 cut(s)	60
BstAPI	GCANNNNNTGC	1 cut(s)	75
BstAUI	TGTACA	1 cut(s)	357
BstC8I	GCNNGC	1 cut(s)	421
BstDEI	CTNAG	1 cut(s)	82
BstFNI	CGCG	2 cut(s)	150, 485
BstKTI	GATC	2 cut(s)	262, 376
BstMAI	GTCTC	2 cut(s)	104, 293
BstMBI	GATC	2 cut(s)	259, 373
BstMWI	GCNNNNNNNGC	6 cut(s)	15, 75, 413, 491, 635, 647
BstSCI	CCNGG	2 cut(s)	267, 342
BstSFI	CTRYAG	1 cut(s)	174
BstUI	CGCG	2 cut(s)	150, 485
BstV1I	GCAGC	3 cut(s)	160, 188, 403
BstX2I	RGATCY	1 cut(s)	259
BstXI	CCANNNNNNTGG	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	259
BsuRI	GGCC	3 cut(s)	221, 284, 321
BtuMI	TCGCGA	2 cut(s)	150, 485
Cac8I	GCNNGC	1 cut(s)	421
Cfr10I	RCCGGY	1 cut(s)	53
Cfr13I	GGNCC	3 cut(s)	238, 265, 319
CpoI	CGGWCCG	1 cut(s)	265
CseI	GACGC	1 cut(s)	68
Csp6I	GTAC	1 cut(s)	358
CspI	CGGWCCG	1 cut(s)	265
CviAII	CATG	3 cut(s)	217, 304, 443
CviQI	GTAC	1 cut(s)	358
DdeI	CTNAG	1 cut(s)	82
DpnI	GATC	2 cut(s)	261, 375
DpnII	GATC	2 cut(s)	259, 373
EaeI	YGGCCR	1 cut(s)	219
EciI	GGCGGA	1 cut(s)	216
Eco31I	GGTCTC	2 cut(s)	104, 293
Eco47I	GGWCC	2 cut(s)	238, 265
Eco88I	CYCGRG	1 cut(s)	89
EcoO109I	RGGNCCY	1 cut(s)	238
EcoT22I	ATGCAT	1 cut(s)	409
FaeI	CATG	3 cut(s)	220, 307, 446
FaiI	YATR	8 cut(s)	218, 305, 378, 427, 444, 530, 588, 590
FalI	AAGNNNNNCTT	2 cut(s)	458, 490
FaqI	GGGAC	1 cut(s)	79
FatI	CATG	3 cut(s)	216, 303, 442
Fnu4HI	GCNGC	6 cut(s)	19, 79, 174, 177, 417, 639
Fsp4HI	GCNGC	6 cut(s)	19, 79, 174, 177, 417, 639
GluI	GCNGC	6 cut(s)	19, 79, 174, 177, 417, 639
GsaI	CCCAGC	1 cut(s)	582
HaeIII	GGCC	3 cut(s)	221, 284, 321
HapII	CCGG	5 cut(s)	54, 195, 263, 268, 343
HgaI	GACGC	1 cut(s)	68
Hin1I	GRCGYC	1 cut(s)	60
Hin1II	CATG	3 cut(s)	220, 307, 446
HinfI	GANTC	3 cut(s)	92, 364, 597
HpaII	CCGG	5 cut(s)	54, 195, 263, 268, 343
Hpy166II	GTNNAC	2 cut(s)	210, 440
Hpy188I	TCNGA	1 cut(s)	252
Hpy188III	TCNNGA	6 cut(s)	149, 263, 298, 337, 368, 484
Hpy8I	GTNNAC	2 cut(s)	210, 440
Hpy99I	CGWCG	5 cut(s)	62, 110, 140, 155, 485
HpyAV	CCTTC	2 cut(s)	139, 295
HpyCH4III	ACNGT	3 cut(s)	164, 207, 214
HpyCH4V	TGCA	3 cut(s)	69, 176, 407
HpyF10VI	GCNNNNNNNGC	6 cut(s)	15, 75, 413, 491, 635, 647
HpyF3I	CTNAG	1 cut(s)	82
Hsp92I	GRCGYC	1 cut(s)	60
Hsp92II	CATG	3 cut(s)	220, 307, 446
Kpn2I	TCCGGA	1 cut(s)	262
Kzo9I	GATC	2 cut(s)	259, 373
LmnI	GCTCC	2 cut(s)	253, 491
LpnPI	CCDG	8 cut(s)	67, 208, 276, 281, 356, 469, 527, 564
Lsp1109I	GCAGC	3 cut(s)	160, 188, 403
LweI	GCATC	1 cut(s)	394
MalI	GATC	2 cut(s)	261, 375
MboI	GATC	2 cut(s)	259, 373
MboII	GAAGA	4 cut(s)	383, 405, 458, 466
MflI	RGATCY	1 cut(s)	259
MhlI	GDGCHC	2 cut(s)	90, 250
MlsI	TGGCCA	1 cut(s)	221
MluNI	TGGCCA	1 cut(s)	221
MlyI	GAGTC	2 cut(s)	101, 358
MnlI	CCTC	5 cut(s)	229, 251, 505, 585, 616
Mox20I	TGGCCA	1 cut(s)	221
Mph1103I	ATGCAT	1 cut(s)	409
MroI	TCCGGA	1 cut(s)	262
MscI	TGGCCA	1 cut(s)	221
MseI	TTAA	1 cut(s)	548
MslI	CAYNNNNRTG	1 cut(s)	215
Msp20I	TGGCCA	1 cut(s)	221
MspI	CCGG	5 cut(s)	54, 195, 263, 268, 343
MspR9I	CCNGG	2 cut(s)	269, 344
Mva1269I	GAATGC	1 cut(s)	20
MvnI	CGCG	2 cut(s)	150, 485
MwoI	GCNNNNNNNGC	6 cut(s)	15, 75, 413, 491, 635, 647
NciI	CCSGG	2 cut(s)	269, 344
NdeII	GATC	2 cut(s)	259, 373
NlaIII	CATG	3 cut(s)	220, 307, 446
NlaIV	GGNNCC	2 cut(s)	261, 493
NruI	TCGCGA	2 cut(s)	150, 485
NsiI	ATGCAT	1 cut(s)	409
PaeR7I	CTCGAG	1 cut(s)	89
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PctI	GAATGC	1 cut(s)	20
PfeI	GAWTC	1 cut(s)	597
PflFI	GACNNNGTC	1 cut(s)	62
PflMI	CCANNNNNTGG	1 cut(s)	120
PkrI	GCNGC	6 cut(s)	20, 80, 175, 178, 418, 640
PleI	GAGTC	2 cut(s)	100, 358
PpsI	GAGTC	2 cut(s)	100, 358
PpuMI	RGGWCCY	1 cut(s)	238
Psp5II	RGGWCCY	1 cut(s)	238
PspFI	CCCAGC	1 cut(s)	578
PspN4I	GGNNCC	2 cut(s)	261, 493
PspPI	GGNCC	3 cut(s)	238, 265, 319
PspPPI	RGGWCCY	1 cut(s)	238
PspXI	VCTCGAGB	1 cut(s)	89
PstI	CTGCAG	1 cut(s)	178
PsuI	RGATCY	1 cut(s)	259
PsyI	GACNNNGTC	1 cut(s)	62
RruI	TCGCGA	2 cut(s)	150, 485
RsaI	GTAC	1 cut(s)	359
RsaNI	GTAC	1 cut(s)	358
RseI	CAYNNNNRTG	1 cut(s)	215
Rsr2I	CGGWCCG	1 cut(s)	265
RsrII	CGGWCCG	1 cut(s)	265
SaqAI	TTAA	1 cut(s)	548
SatI	GCNGC	6 cut(s)	19, 79, 174, 177, 417, 639
Sau3AI	GATC	2 cut(s)	259, 373
Sau96I	GGNCC	3 cut(s)	238, 265, 319
SchI	GAGTC	2 cut(s)	101, 358
ScrFI	CCNGG	2 cut(s)	269, 344
SduI	GDGCHC	2 cut(s)	90, 250
SetI	ASST	4 cut(s)	131, 240, 317, 643
SfaNI	GCATC	1 cut(s)	394
SfcI	CTRYAG	1 cut(s)	174
Sfr274I	CTCGAG	1 cut(s)	89
SgrAI	CRCCGGYG	1 cut(s)	53
SinI	GGWCC	2 cut(s)	238, 265
SlaI	CTCGAG	1 cut(s)	89
SmiMI	CAYNNNNRTG	1 cut(s)	215
SmlI	CTYRAG	2 cut(s)	89, 464
SmoI	CTYRAG	2 cut(s)	89, 464
SsiI	CCGC	3 cut(s)	19, 78, 201
StyD4I	CCNGG	2 cut(s)	267, 342
TaaI	ACNGT	3 cut(s)	164, 207, 214
TaqI	TCGA	4 cut(s)	42, 90, 105, 297
TatI	WGTACW	1 cut(s)	357
TauI	GCSGC	2 cut(s)	21, 81
TfiI	GAWTC	1 cut(s)	597
Tru1I	TTAA	1 cut(s)	548
Tru9I	TTAA	1 cut(s)	548
TseI	GCWGC	4 cut(s)	173, 176, 416, 638
TspDTI	ATGAA	1 cut(s)	459
TspGWI	ACGGA	3 cut(s)	233, 246, 469
Tth111I	GACNNNGTC	1 cut(s)	62
Van91I	CCANNNNNTGG	1 cut(s)	120
VpaK11BI	GGWCC	2 cut(s)	238, 265
XhoI	CTCGAG	1 cut(s)	89
Zsp2I	ATGCAT	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.