Rh7BG469700

Transcription initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0013689
Physical Location & Seq
Reverse (-)
55491107 .. 55491397
291 bp
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UTR
Exon/CDS
Intron
Rh7BG469700.1

Sequence Viewer

Length: 291 bp
ATGAGGCGATTCTGTTCCTCTCTTGGCTTGAACAATCAAGCAATCAAAGCAGCACAACAAGCTGTGCACAAGTCGCAAGAATTTGATATAAGGAGGAGCCCTGTATCGATAGCCGCAGCAGTGATTTACATCATCACTCAGCTTTCAGATGATAGTAACAAGAAGCCTCTCAAAGATATTGCAGACGTTACAGGAGTAGCACCAGCAACTATCAAAAATTCATACAAAGACCTTAGTCCTCATGTATCTGAAATAATACCCAACTGGTATCATCTGAATTTGTCAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko03022 ko05169 ko05203 map03022 map05169 map05203
Pfam Domains
Protein Families
TFIIB TF_Zn_Ribbon

Protein Analysis

96

Amino Acids

10.68

Weight (kDa)

9.46

Isoelectric Point (pI)

55.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TFIIB PF00382 1 - 79 4.9e-11 Transcription factor TFIIB repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 114
AcsI RAATTY 3 cut(s) 80, 217, 277
AgsI TTSAA 1 cut(s) 31
AluBI AGCT 2 cut(s) 62, 142
AluI AGCT 2 cut(s) 62, 142
Alw21I GWGCWC 1 cut(s) 69
Alw44I GTGCAC 1 cut(s) 65
ApaLI GTGCAC 1 cut(s) 65
ApeKI GCWGC 2 cut(s) 50, 116
ApoI RAATTY 3 cut(s) 80, 217, 277
BaeGI GKGCMC 1 cut(s) 69
BanII GRGCYC 1 cut(s) 101
Bbv12I GWGCWC 1 cut(s) 69
BbvI GCAGC 2 cut(s) 62, 128
BisI GCNGC 3 cut(s) 51, 114, 117
BlsI GCNGC 3 cut(s) 52, 115, 118
BmiI GGNNCC 1 cut(s) 98
BoxI GACNNNNGTC 1 cut(s) 234
Bsa29I ATCGAT 1 cut(s) 107
BsaBI GATNNNNATC 1 cut(s) 128
Bse1I ACTGG 1 cut(s) 269
Bse8I GATNNNNATC 1 cut(s) 128
BseCI ATCGAT 1 cut(s) 107
BseJI GATNNNNATC 1 cut(s) 128
BseMII CTCAG 1 cut(s) 152
BseNI ACTGG 1 cut(s) 269
BseRI GAGGAG 1 cut(s) 109
BseSI GKGCMC 1 cut(s) 69
BseXI GCAGC 2 cut(s) 62, 128
BshVI ATCGAT 1 cut(s) 107
BsiHKAI GWGCWC 1 cut(s) 69
Bsp1286I GDGCHC 2 cut(s) 69, 101
BspACI CCGC 1 cut(s) 114
BspCNI CTCAG 1 cut(s) 151
BspDI ATCGAT 1 cut(s) 107
BspLI GGNNCC 1 cut(s) 98
BsrI ACTGG 1 cut(s) 269
BstDEI CTNAG 2 cut(s) 138, 233
BstMWI GCNNNNNNNGC 3 cut(s) 47, 59, 73
BstPAI GACNNNNGTC 1 cut(s) 234
BstSLI GKGCMC 1 cut(s) 69
BstV1I GCAGC 2 cut(s) 62, 128
Bsu15I ATCGAT 1 cut(s) 107
BsuTUI ATCGAT 1 cut(s) 107
BtsI GCAGTG 1 cut(s) 126
BtsIMutI CAGTG 1 cut(s) 126
ClaI ATCGAT 1 cut(s) 107
CviAII CATG 1 cut(s) 242
CviJI RGCY 6 cut(s) 27, 62, 99, 113, 142, 166
CviKI_1 RGCY 6 cut(s) 27, 62, 99, 113, 142, 166
DdeI CTNAG 2 cut(s) 138, 233
Eco24I GRGCYC 1 cut(s) 101
EcoT38I GRGCYC 1 cut(s) 101
FaeI CATG 1 cut(s) 245
FaiI YATR 3 cut(s) 89, 223, 243
FatI CATG 1 cut(s) 241
Fnu4HI GCNGC 3 cut(s) 51, 114, 117
FriOI GRGCYC 1 cut(s) 101
Fsp4HI GCNGC 3 cut(s) 51, 114, 117
GluI GCNGC 3 cut(s) 51, 114, 117
Hin1II CATG 1 cut(s) 245
HinfI GANTC 1 cut(s) 9
Hpy166II GTNNAC 1 cut(s) 67
Hpy188I TCNGA 3 cut(s) 148, 250, 276
Hpy188III TCNNGA 1 cut(s) 285
Hpy8I GTNNAC 1 cut(s) 67
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 2 cut(s) 67, 182
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 59, 73
HpyF3I CTNAG 2 cut(s) 138, 233
HpySE526I ACGT 1 cut(s) 186
Hsp92II CATG 1 cut(s) 245
LmnI GCTCC 1 cut(s) 96
LpnPI CCDG 4 cut(s) 114, 177, 216, 250
Lsp1109I GCAGC 2 cut(s) 62, 128
MaeII ACGT 1 cut(s) 186
MaeIII GTNAC 2 cut(s) 155, 187
MhlI GDGCHC 2 cut(s) 69, 101
MluCI AATT 3 cut(s) 80, 217, 277
MnlI CCTC 4 cut(s) 28, 87, 177, 249
MwoI GCNNNNNNNGC 3 cut(s) 47, 59, 73
NlaIII CATG 1 cut(s) 245
NlaIV GGNNCC 1 cut(s) 98
PfeI GAWTC 1 cut(s) 9
PkrI GCNGC 3 cut(s) 52, 115, 118
PshAI GACNNNNGTC 1 cut(s) 234
PspN4I GGNNCC 1 cut(s) 98
SatI GCNGC 3 cut(s) 51, 114, 117
SduI GDGCHC 2 cut(s) 69, 101
SetI ASST 4 cut(s) 64, 144, 189, 234
Sse9I AATT 3 cut(s) 80, 217, 277
SsiI CCGC 1 cut(s) 114
TaiI ACGT 1 cut(s) 189
TaqI TCGA 1 cut(s) 107
TasI AATT 3 cut(s) 80, 217, 277
TauI GCSGC 1 cut(s) 116
TfiI GAWTC 1 cut(s) 9
TscAI CASTG 1 cut(s) 126
TseI GCWGC 2 cut(s) 50, 116
TspDTI ATGAA 1 cut(s) 210
TspRI CASTG 1 cut(s) 126
VneI GTGCAC 1 cut(s) 65
XapI RAATTY 3 cut(s) 80, 217, 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.