Rorug07G0346400

Transcription initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0013689
Physical Location & Seq
Forward (+)
38431005 .. 38431836
832 bp
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UTR
Exon/CDS
Intron
Rorug07G0346400.1

Sequence Viewer

Length: 360 bp
ATGGCGAAATCAGCAGCAGCAGCAGGCATGAAGAGGAACAGTTCGAGTGTTTCGGACTCGGAAATAATAGACGCAGCAAATCTGCTCATACAACTCAGCGCAAGCTCCGATACGATTTACTACGACGCTGAAGAAGAAAGCGTTGGTAAAACAACGCCAACTGCTCATCACGATGATCATGATCAGGTGTCTTCTTCTGCCTTTAAATATAGAGTGTTTGAAGAGGAAGATGAAGATGAAGTGGGTTTCGGTAAGCGAATTGAGAAGAAACGATTTCGCTTGATTTCGGATCTGTACGAGCAGACGAAGCCTCTCAAAAATGGTGGTGTTGTAAATAGAAGGAAAAGGAGGATGGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko03022 ko05169 ko05203 map03022 map05169 map05203
Pfam Domains
Protein Families
TFIIB TF_Zn_Ribbon

Protein Analysis

119

Amino Acids

13.36

Weight (kDa)

5.93

Isoelectric Point (pI)

59.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 297
AcuI CTGAAG 1 cut(s) 150
AfaI GTAC 1 cut(s) 296
AgsI TTSAA 1 cut(s) 221
AjuI GAANNNNNNNTTGG 2 cut(s) 126, 158
AluBI AGCT 1 cut(s) 105
AluI AGCT 1 cut(s) 105
AlwI GGATC 1 cut(s) 297
ApeKI GCWGC 4 cut(s) 14, 17, 20, 74
AspLEI GCGC 1 cut(s) 101
BbsI GAAGAC 1 cut(s) 183
BbvI GCAGC 4 cut(s) 26, 29, 32, 86
BccI CCATC 1 cut(s) 346
BclI TGATCA 2 cut(s) 175, 181
BisI GCNGC 4 cut(s) 15, 18, 21, 75
BlsI GCNGC 4 cut(s) 16, 19, 22, 76
BpiI GAAGAC 1 cut(s) 183
BsaBI GATNNNNATC 1 cut(s) 180
Bse8I GATNNNNATC 1 cut(s) 180
BseGI GGATG 1 cut(s) 357
BseJI GATNNNNATC 1 cut(s) 180
BseMII CTCAG 1 cut(s) 109
BseXI GCAGC 4 cut(s) 26, 29, 32, 86
Bsp143I GATC 3 cut(s) 175, 181, 289
BspCNI CTCAG 1 cut(s) 108
BspHI TCATGA 1 cut(s) 178
BspPI GGATC 1 cut(s) 297
BssMI GATC 3 cut(s) 175, 181, 289
Bst4CI ACNGT 1 cut(s) 41
Bst6I CTCTTC 2 cut(s) 26, 216
BstC8I GCNNGC 2 cut(s) 25, 103
BstDEI CTNAG 1 cut(s) 95
BstF5I GGATG 1 cut(s) 357
BstHHI GCGC 1 cut(s) 101
BstKTI GATC 3 cut(s) 178, 184, 292
BstMBI GATC 3 cut(s) 175, 181, 289
BstMWI GCNNNNNNNGC 3 cut(s) 11, 20, 307
BstV1I GCAGC 4 cut(s) 26, 29, 32, 86
BstV2I GAAGAC 1 cut(s) 183
BstX2I RGATCY 1 cut(s) 289
BstYI RGATCY 1 cut(s) 289
BtsCI GGATG 1 cut(s) 357
Cac8I GCNNGC 2 cut(s) 25, 103
CciI TCATGA 1 cut(s) 178
CfoI GCGC 1 cut(s) 101
CseI GACGC 2 cut(s) 80, 134
Csp6I GTAC 1 cut(s) 295
CspCI CAANNNNNGTGG 2 cut(s) 304, 339
CviAII CATG 2 cut(s) 28, 179
CviJI RGCY 2 cut(s) 105, 310
CviKI_1 RGCY 2 cut(s) 105, 310
CviQI GTAC 1 cut(s) 295
DdeI CTNAG 1 cut(s) 95
DpnI GATC 3 cut(s) 177, 183, 291
DpnII GATC 3 cut(s) 175, 181, 289
DraI TTTAAA 1 cut(s) 205
Eam1104I CTCTTC 2 cut(s) 26, 216
EarI CTCTTC 2 cut(s) 26, 216
Eco57I CTGAAG 1 cut(s) 150
FaeI CATG 2 cut(s) 31, 182
FaiI YATR 4 cut(s) 29, 89, 180, 210
FatI CATG 2 cut(s) 27, 178
FbaI TGATCA 2 cut(s) 175, 181
Fnu4HI GCNGC 4 cut(s) 15, 18, 21, 75
Fsp4HI GCNGC 4 cut(s) 15, 18, 21, 75
GlaI GCGC 1 cut(s) 100
GluI GCNGC 4 cut(s) 15, 18, 21, 75
HgaI GACGC 2 cut(s) 80, 134
HhaI GCGC 1 cut(s) 101
Hin1II CATG 2 cut(s) 31, 182
Hin6I GCGC 1 cut(s) 99
HinP1I GCGC 1 cut(s) 99
HinfI GANTC 1 cut(s) 56
Hpy188I TCNGA 4 cut(s) 55, 61, 109, 289
Hpy188III TCNNGA 2 cut(s) 170, 179
Hpy99I CGWCG 1 cut(s) 128
HpyAV CCTTC 1 cut(s) 333
HpyCH4III ACNGT 1 cut(s) 41
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 20, 307
HpyF3I CTNAG 1 cut(s) 95
Hsp92II CATG 2 cut(s) 31, 182
HspAI GCGC 1 cut(s) 99
Ksp22I TGATCA 2 cut(s) 175, 181
Kzo9I GATC 3 cut(s) 175, 181, 289
LmnI GCTCC 1 cut(s) 110
LpnPI CCDG 2 cut(s) 9, 170
Lsp1109I GCAGC 4 cut(s) 26, 29, 32, 86
MalI GATC 3 cut(s) 177, 183, 291
MboI GATC 3 cut(s) 175, 181, 289
MboII GAAGA 9 cut(s) 43, 143, 146, 183, 186, 233, 239, 245, 277
MflI RGATCY 1 cut(s) 289
MluCI AATT 1 cut(s) 258
MlyI GAGTC 1 cut(s) 50
MnlI CCTC 4 cut(s) 27, 217, 321, 342
MseI TTAA 1 cut(s) 204
MslI CAYNNNNRTG 1 cut(s) 171
MwoI GCNNNNNNNGC 3 cut(s) 11, 20, 307
NdeII GATC 3 cut(s) 175, 181, 289
NlaIII CATG 2 cut(s) 31, 182
PagI TCATGA 1 cut(s) 178
PkrI GCNGC 4 cut(s) 16, 19, 22, 76
PleI GAGTC 1 cut(s) 50
PpsI GAGTC 1 cut(s) 50
PsuI RGATCY 1 cut(s) 289
RsaI GTAC 1 cut(s) 296
RsaNI GTAC 1 cut(s) 295
RseI CAYNNNNRTG 1 cut(s) 171
SaqAI TTAA 1 cut(s) 204
SatI GCNGC 4 cut(s) 15, 18, 21, 75
Sau3AI GATC 3 cut(s) 175, 181, 289
SchI GAGTC 1 cut(s) 50
SetI ASST 2 cut(s) 107, 189
SmiMI CAYNNNNRTG 1 cut(s) 171
Sse9I AATT 1 cut(s) 258
TaaI ACNGT 1 cut(s) 41
TaqI TCGA 1 cut(s) 44
TasI AATT 1 cut(s) 258
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TseI GCWGC 4 cut(s) 14, 17, 20, 74
TspDTI ATGAA 3 cut(s) 44, 246, 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.