Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0013689

Physical Location & Seq

Genomic Coordinates Forward (+)

69627138 .. 69628013

Gene Structure 876 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG517300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGATTGCCACGAATGCCGCTTTCAAACCGATGTGGTGTTCGACCACTCCACCGGCGACGCCGTGTGCAAAAACTGCGGCTTAGTGCTTGAGTCCCACTACATCGACGAGACCAACGAGTGGCGAACCTTCGCCGACGACAATACTCGCGACGACCCTAACCGTGTTGGTGCAGCCACCAACCCACTATTGTCCGGTGGCGGACTGTCCACCGTCATGGCCCAGCCCAACGGAGAGGTCCTCCGTGCTCCGAATAGGGATCCGGACCGGGGCTTGATAATGGCCATCGAGACCATGTGTGATAGGTTGGGCCTTGTTTCAACCATCAAGAACCGGGCAAATGAGATGTACAAGACTCTTGAAGATCATAAGTGTAGCAAGGGAAGAAACCAATTAGATGCATTATTGGCTGCTTGCCTATACATTGCTTGTAAACAAGAAGACAAGCCCAGAACTCTCAAGGAAATCTTCTCCGTCGCGAATGGAGCCTCAAAGAAAGAGATTGGTAGAGCAAAGGAATACATAATCAACCAACTGGGGTTAATGGAGAAGCCATTTCAAGTAGCAAATGCTGGGGACTATATGAGGCGATTCTGTTCCTCTCTTGGCTTGAACAATCAAGCAATCAAAGCAGCTCAACAAGCTGTGCACAAGTCGCAAGAAGTTGATATAAGGAGGAGCCCTGTATCGATAGCCGCAGCAGTGATTTACATCATCACTCAGCTTTCAGATGATGGTAACAAGAGGCCTCTCAAAGATATCGCACACGTTACAGGAGTAGCACCAGCAACTATCAAAAATTCATACAAAGACCTTAGTCCTCATGTATCTGAAATAATACCCAACTGGTATCATCTGAATTTGTCAAACACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03022 ko05169 ko05203 map03022 map05169 map05203

Pfam Domains

Protein Families

TFIIB TF_Zn_Ribbon

Protein Analysis

291

Amino Acids

32.22

Weight (kDa)

6.71

Isoelectric Point (pI)

39.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_Ribbon_TF	PF08271	2 - 44	1.2e-13	TFIIB zinc-binding
TFIIB	PF00382	96 - 170	1.7e-16	Transcription factor TFIIB repeat
TFIIB	PF00382	188 - 273	2.6e-12	Transcription factor TFIIB repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013689)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g39300
rosa_chinensis	RchiOBHm_Chr7g0241511 RchiOBHm_Chr7g0241691
rosa_laevigata	RLG00000000553 RLG00000000574
rosa_multiflora	Rmu_co8351453.1_g000001 Rmu_sc0002268.1_g000006 Rmu_sc0026340.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218810
rosa_rugosa	Rorug03G0267400 Rorug07G0344500 Rorug07G0346400
rosa_samantha	Rh7AG500900 Rh7BG469700 Rh7BG472100 Rh7CG517300 Rh7DG485800
rosa_wichuraiana	Rw7G042320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	120
AccII	CGCG	2 cut(s)	150, 479
AccIII	TCCGGA	1 cut(s)	262
AciI	CCGC	4 cut(s)	19, 78, 201, 696
AclWI	GGATC	2 cut(s)	254, 267
AcoI	YGGCCR	1 cut(s)	282
AcsI	RAATTY	2 cut(s)	799, 859
AcyI	GRCGYC	1 cut(s)	60
AfaI	GTAC	1 cut(s)	350
AfiI	CCNNNNNNNGG	2 cut(s)	120, 269
AflIII	ACRYGT	1 cut(s)	766
AgsI	TTSAA	5 cut(s)	26, 321, 362, 560, 613
AluBI	AGCT	3 cut(s)	635, 644, 724
AluI	AGCT	3 cut(s)	635, 644, 724
Alw21I	GWGCWC	2 cut(s)	250, 651
Alw26I	GTCTC	2 cut(s)	104, 284
Alw44I	GTGCAC	1 cut(s)	647
AlwI	GGATC	2 cut(s)	254, 267
Aor13HI	TCCGGA	1 cut(s)	262
AoxI	GGCC	4 cut(s)	219, 282, 310, 746
ApaLI	GTGCAC	1 cut(s)	647
ApeKI	GCWGC	4 cut(s)	173, 410, 632, 698
ApoI	RAATTY	2 cut(s)	799, 859
AspS9I	GGNCC	4 cut(s)	220, 238, 265, 310
AsuC2I	CCSGG	2 cut(s)	269, 335
AvaII	GGWCC	2 cut(s)	238, 265
BaeGI	GKGCMC	1 cut(s)	651
BalI	TGGCCA	1 cut(s)	284
BamHI	GGATCC	1 cut(s)	259
BanII	GRGCYC	1 cut(s)	683
BbsI	GAAGAC	1 cut(s)	447
Bbv12I	GWGCWC	2 cut(s)	250, 651
BbvI	GCAGC	4 cut(s)	185, 397, 644, 710
BccI	CCATC	3 cut(s)	293, 332, 728
BceAI	ACGGC	1 cut(s)	47
BcnI	CCSGG	2 cut(s)	269, 335
BcoDI	GTCTC	2 cut(s)	104, 284
BisI	GCNGC	7 cut(s)	19, 79, 174, 411, 633, 696, 699
BlsI	GCNGC	7 cut(s)	20, 80, 175, 412, 634, 697, 700
Bme1390I	CCNGG	2 cut(s)	269, 335
Bme18I	GGWCC	2 cut(s)	238, 265
BmgT120I	GGNCC	4 cut(s)	220, 238, 265, 310
BmiI	GGNNCC	3 cut(s)	261, 487, 680
BmrFI	CCNGG	2 cut(s)	269, 335
BmrI	ACTGGG	1 cut(s)	545
BmsI	GCATC	1 cut(s)	388
BmuI	ACTGGG	1 cut(s)	545
BoxI	GACNNNNGTC	1 cut(s)	816
BpiI	GAAGAC	1 cut(s)	447
BplI	GAGNNNNNCTC	2 cut(s)	225, 257
BpuEI	CTTGAG	2 cut(s)	110, 443
BpuMI	CCSGG	2 cut(s)	269, 335
Bsa29I	ATCGAT	1 cut(s)	689
BsaBI	GATNNNNATC	1 cut(s)	710
BsaHI	GRCGYC	1 cut(s)	60
BsaI	GGTCTC	2 cut(s)	104, 284
BsaJI	CCNNGG	1 cut(s)	268
BsaWI	WCCGGW	2 cut(s)	194, 262
Bsc4I	CCNNNNNNNGG	2 cut(s)	120, 269
Bse118I	RCCGGY	1 cut(s)	53
Bse1I	ACTGG	2 cut(s)	540, 851
Bse3DI	GCAATG	1 cut(s)	423
Bse8I	GATNNNNATC	1 cut(s)	710
BseAI	TCCGGA	1 cut(s)	262
BseCI	ATCGAT	1 cut(s)	689
BseDI	CCNNGG	1 cut(s)	268
BseJI	GATNNNNATC	1 cut(s)	710
BseLI	CCNNNNNNNGG	2 cut(s)	120, 269
BseMI	GCAATG	1 cut(s)	423
BseMII	CTCAG	1 cut(s)	734
BseNI	ACTGG	2 cut(s)	540, 851
BseRI	GAGGAG	1 cut(s)	691
BseSI	GKGCMC	1 cut(s)	651
BseXI	GCAGC	4 cut(s)	185, 397, 644, 710
BseYI	CCCAGC	2 cut(s)	222, 572
BsgI	GTGCAG	1 cut(s)	192
Bsh1236I	CGCG	2 cut(s)	150, 479
BshFI	GGCC	4 cut(s)	221, 284, 312, 748
BshVI	ATCGAT	1 cut(s)	689
BsiHKAI	GWGCWC	2 cut(s)	250, 651
BsiSI	CCGG	5 cut(s)	54, 195, 263, 268, 334
BslFI	GGGAC	2 cut(s)	79, 590
BslI	CCNNNNNNNGG	2 cut(s)	120, 269
BsmAI	GTCTC	2 cut(s)	104, 284
BsmFI	GGGAC	2 cut(s)	79, 590
BsmI	GAATGC	1 cut(s)	20
BsnI	GGCC	4 cut(s)	221, 284, 312, 748
Bso31I	GGTCTC	2 cut(s)	104, 284
Bsp1286I	GDGCHC	3 cut(s)	250, 651, 683
Bsp13I	TCCGGA	1 cut(s)	262
Bsp1407I	TGTACA	1 cut(s)	348
Bsp143I	GATC	2 cut(s)	259, 364
Bsp68I	TCGCGA	2 cut(s)	150, 479
BspACI	CCGC	4 cut(s)	19, 78, 201, 696
BspANI	GGCC	4 cut(s)	221, 284, 312, 748
BspCNI	CTCAG	1 cut(s)	733
BspDI	ATCGAT	1 cut(s)	689
BspEI	TCCGGA	1 cut(s)	262
BspFNI	CGCG	2 cut(s)	150, 479
BspLI	GGNNCC	3 cut(s)	261, 487, 680
BspPI	GGATC	2 cut(s)	254, 267
BspTNI	GGTCTC	2 cut(s)	104, 284
BsrDI	GCAATG	1 cut(s)	423
BsrFI	RCCGGY	1 cut(s)	53
BsrGI	TGTACA	1 cut(s)	348
BsrI	ACTGG	2 cut(s)	540, 851
BssAI	RCCGGY	1 cut(s)	53
BssECI	CCNNGG	1 cut(s)	268
BssMI	GATC	2 cut(s)	259, 364
BssNI	GRCGYC	1 cut(s)	60
Bst4CI	ACNGT	3 cut(s)	164, 207, 214
BstACI	GRCGYC	1 cut(s)	60
BstAPI	GCANNNNNTGC	1 cut(s)	75
BstAUI	TGTACA	1 cut(s)	348
BstC8I	GCNNGC	1 cut(s)	415
BstDEI	CTNAG	3 cut(s)	82, 720, 815
BstFNI	CGCG	2 cut(s)	150, 479
BstKTI	GATC	2 cut(s)	262, 367
BstMAI	GTCTC	2 cut(s)	104, 284
BstMBI	GATC	2 cut(s)	259, 364
BstMWI	GCNNNNNNNGC	7 cut(s)	15, 75, 407, 485, 629, 641, 655
BstPAI	GACNNNNGTC	1 cut(s)	816
BstSCI	CCNGG	2 cut(s)	267, 333
BstSLI	GKGCMC	1 cut(s)	651
BstUI	CGCG	2 cut(s)	150, 479
BstV1I	GCAGC	4 cut(s)	185, 397, 644, 710
BstV2I	GAAGAC	1 cut(s)	447
BstX2I	RGATCY	1 cut(s)	259
BstXI	CCANNNNNNTGG	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	259
Bsu15I	ATCGAT	1 cut(s)	689
BsuRI	GGCC	4 cut(s)	221, 284, 312, 748
BsuTUI	ATCGAT	1 cut(s)	689
BtsI	GCAGTG	1 cut(s)	708
BtsIMutI	CAGTG	1 cut(s)	708
BtuMI	TCGCGA	2 cut(s)	150, 479
Cac8I	GCNNGC	1 cut(s)	415
Cfr10I	RCCGGY	1 cut(s)	53
Cfr13I	GGNCC	4 cut(s)	220, 238, 265, 310
ClaI	ATCGAT	1 cut(s)	689
CpoI	CGGWCCG	1 cut(s)	265
CseI	GACGC	1 cut(s)	68
Csp6I	GTAC	1 cut(s)	349
CspI	CGGWCCG	1 cut(s)	265
CviAII	CATG	3 cut(s)	217, 295, 824
CviQI	GTAC	1 cut(s)	349
DdeI	CTNAG	3 cut(s)	82, 720, 815
DpnI	GATC	2 cut(s)	261, 366
DpnII	GATC	2 cut(s)	259, 364
EaeI	YGGCCR	1 cut(s)	282
EciI	GGCGGA	1 cut(s)	216
Eco147I	AGGCCT	1 cut(s)	748
Eco24I	GRGCYC	1 cut(s)	683
Eco31I	GGTCTC	2 cut(s)	104, 284
Eco32I	GATATC	1 cut(s)	760
Eco47I	GGWCC	2 cut(s)	238, 265
EcoO109I	RGGNCCY	1 cut(s)	238
EcoRV	GATATC	1 cut(s)	760
EcoT22I	ATGCAT	1 cut(s)	403
EcoT38I	GRGCYC	1 cut(s)	683
FaeI	CATG	3 cut(s)	220, 298, 827
FalI	AAGNNNNNCTT	2 cut(s)	452, 484
FaqI	GGGAC	2 cut(s)	79, 590
FatI	CATG	3 cut(s)	216, 294, 823
Fnu4HI	GCNGC	7 cut(s)	19, 79, 174, 411, 633, 696, 699
FriOI	GRGCYC	1 cut(s)	683
Fsp4HI	GCNGC	7 cut(s)	19, 79, 174, 411, 633, 696, 699
GluI	GCNGC	7 cut(s)	19, 79, 174, 411, 633, 696, 699
GsaI	CCCAGC	2 cut(s)	226, 576
HaeIII	GGCC	4 cut(s)	221, 284, 312, 748
HapII	CCGG	5 cut(s)	54, 195, 263, 268, 334
HgaI	GACGC	1 cut(s)	68
Hin1I	GRCGYC	1 cut(s)	60
Hin1II	CATG	3 cut(s)	220, 298, 827
HinfI	GANTC	3 cut(s)	92, 355, 591
HpaII	CCGG	5 cut(s)	54, 195, 263, 268, 334
Hpy166II	GTNNAC	3 cut(s)	210, 434, 649
Hpy188I	TCNGA	4 cut(s)	252, 730, 832, 858
Hpy188III	TCNNGA	6 cut(s)	149, 263, 289, 328, 359, 478
Hpy8I	GTNNAC	3 cut(s)	210, 434, 649
Hpy99I	CGWCG	5 cut(s)	62, 110, 140, 155, 479
HpyAV	CCTTC	1 cut(s)	139
HpyCH4III	ACNGT	3 cut(s)	164, 207, 214
HpyCH4IV	ACGT	1 cut(s)	768
HpyCH4V	TGCA	4 cut(s)	69, 173, 401, 649
HpyF10VI	GCNNNNNNNGC	7 cut(s)	15, 75, 407, 485, 629, 641, 655
HpyF3I	CTNAG	3 cut(s)	82, 720, 815
HpySE526I	ACGT	1 cut(s)	768
Hsp92I	GRCGYC	1 cut(s)	60
Hsp92II	CATG	3 cut(s)	220, 298, 827
Kpn2I	TCCGGA	1 cut(s)	262
Kzo9I	GATC	2 cut(s)	259, 364
LmnI	GCTCC	3 cut(s)	253, 485, 678
Lsp1109I	GCAGC	4 cut(s)	185, 397, 644, 710
LweI	GCATC	1 cut(s)	388
MaeII	ACGT	1 cut(s)	768
MaeIII	GTNAC	2 cut(s)	737, 769
MalI	GATC	2 cut(s)	261, 366
MboI	GATC	2 cut(s)	259, 364
MboII	GAAGA	4 cut(s)	374, 396, 452, 460
MflI	RGATCY	1 cut(s)	259
MhlI	GDGCHC	3 cut(s)	250, 651, 683
MlsI	TGGCCA	1 cut(s)	284
MluCI	AATT	3 cut(s)	392, 799, 859
MluNI	TGGCCA	1 cut(s)	284
MlyI	GAGTC	2 cut(s)	101, 349
MnlI	CCTC	9 cut(s)	229, 251, 499, 579, 610, 669, 738, 759, 831
Mox20I	TGGCCA	1 cut(s)	284
Mph1103I	ATGCAT	1 cut(s)	403
MroI	TCCGGA	1 cut(s)	262
MscI	TGGCCA	1 cut(s)	284
MseI	TTAA	1 cut(s)	542
MslI	CAYNNNNRTG	1 cut(s)	215
Msp20I	TGGCCA	1 cut(s)	284
MspI	CCGG	5 cut(s)	54, 195, 263, 268, 334
MspR9I	CCNGG	2 cut(s)	269, 335
Mva1269I	GAATGC	1 cut(s)	20
MvnI	CGCG	2 cut(s)	150, 479
MwoI	GCNNNNNNNGC	7 cut(s)	15, 75, 407, 485, 629, 641, 655
NciI	CCSGG	2 cut(s)	269, 335
NdeII	GATC	2 cut(s)	259, 364
NlaIII	CATG	3 cut(s)	220, 298, 827
NlaIV	GGNNCC	3 cut(s)	261, 487, 680
NruI	TCGCGA	2 cut(s)	150, 479
NsiI	ATGCAT	1 cut(s)	403
PceI	AGGCCT	1 cut(s)	748
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PctI	GAATGC	1 cut(s)	20
PfeI	GAWTC	1 cut(s)	591
PflMI	CCANNNNNTGG	1 cut(s)	120
PkrI	GCNGC	7 cut(s)	20, 80, 175, 412, 634, 697, 700
PleI	GAGTC	2 cut(s)	100, 349
PpsI	GAGTC	2 cut(s)	100, 349
PpuMI	RGGWCCY	1 cut(s)	238
PshAI	GACNNNNGTC	1 cut(s)	816
Psp5II	RGGWCCY	1 cut(s)	238
PspFI	CCCAGC	2 cut(s)	222, 572
PspN4I	GGNNCC	3 cut(s)	261, 487, 680
PspPI	GGNCC	4 cut(s)	220, 238, 265, 310
PspPPI	RGGWCCY	1 cut(s)	238
PsuI	RGATCY	1 cut(s)	259
RruI	TCGCGA	2 cut(s)	150, 479
RsaI	GTAC	1 cut(s)	350
RsaNI	GTAC	1 cut(s)	349
RseI	CAYNNNNRTG	1 cut(s)	215
Rsr2I	CGGWCCG	1 cut(s)	265
RsrII	CGGWCCG	1 cut(s)	265
SaqAI	TTAA	1 cut(s)	542
SatI	GCNGC	7 cut(s)	19, 79, 174, 411, 633, 696, 699
Sau3AI	GATC	2 cut(s)	259, 364
Sau96I	GGNCC	4 cut(s)	220, 238, 265, 310
SchI	GAGTC	2 cut(s)	101, 349
ScrFI	CCNGG	2 cut(s)	269, 335
SduI	GDGCHC	3 cut(s)	250, 651, 683
SetI	ASST	8 cut(s)	131, 240, 308, 637, 646, 726, 771, 816
SfaNI	GCATC	1 cut(s)	388
SgrAI	CRCCGGYG	1 cut(s)	53
SinI	GGWCC	2 cut(s)	238, 265
SmiMI	CAYNNNNRTG	1 cut(s)	215
SmlI	CTYRAG	2 cut(s)	89, 458
SmoI	CTYRAG	2 cut(s)	89, 458
Sse9I	AATT	3 cut(s)	392, 799, 859
SseBI	AGGCCT	1 cut(s)	748
SsiI	CCGC	4 cut(s)	19, 78, 201, 696
StuI	AGGCCT	1 cut(s)	748
StyD4I	CCNGG	2 cut(s)	267, 333
TaaI	ACNGT	3 cut(s)	164, 207, 214
TaiI	ACGT	1 cut(s)	771
TaqI	TCGA	4 cut(s)	42, 105, 288, 689
TasI	AATT	3 cut(s)	392, 799, 859
TatI	WGTACW	1 cut(s)	348
TauI	GCSGC	3 cut(s)	21, 81, 698
TfiI	GAWTC	1 cut(s)	591
Tru1I	TTAA	1 cut(s)	542
Tru9I	TTAA	1 cut(s)	542
TscAI	CASTG	1 cut(s)	708
TseI	GCWGC	4 cut(s)	173, 410, 632, 698
TspDTI	ATGAA	1 cut(s)	792
TspGWI	ACGGA	3 cut(s)	233, 246, 463
TspRI	CASTG	1 cut(s)	708
Van91I	CCANNNNNTGG	1 cut(s)	120
VneI	GTGCAC	1 cut(s)	647
VpaK11BI	GGWCC	2 cut(s)	238, 265
XapI	RAATTY	2 cut(s)	799, 859
Zsp2I	ATGCAT	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.