Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0018215

Physical Location & Seq

Genomic Coordinates Reverse (-)

6199543 .. 6202599

Gene Structure 3057 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000833

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGATGCTGACACTGAACGAAGAGCTGCGTCAAGGTTCTGATGATGATCGAAGAAAGATGGGCGGAACCTTGCTTGGTTTGGCGGAAGCTAGTGATCTGGAGGTTGCTGGCGGCCAACCCAAGATTAGAAATGTTTCGATTTCCGTAACCCCAGAAGGTTTTTGGTGTTGTCCTTCTCCTGTTGCGTTTCAAACGACCCTTAAGGCTCATAACTCTCTACACAAACCCAAGTCCTCATCACCACCACCACCACCTCCACCACCCAAGGCAACAGCTCATAGAAAACAAACTATACTGAATGAAAAGAAGCCAACTTTCGGGCCATCTAGATCTGTTTCTGATGGTCACAGGACTCTTGGTCCGGAGGGGCCAGAGGCACCTGCCCTCGGTGTATCTTTGGTTGCAGAGAGAGTTCCGAGGCCCAAAGTCGAAAATTTGCCAAGGAATGTGGCAATTGTGTTTGGTGAGCCTGGAACTAGTGATATGAAGGTGATTTTACTTGGGAAGCAGGAATTTTGTGTGAAGTTTAATGTTCACAAGAATGTTCTAGTGGAGAATAGCAACTTTTTTGCTGACAAACTTGTTGAACAACAGTCTAGTTCATCGTGCCTTGAAATTGAAATTGAAGAGTGCGAGGATGTTGAAATATATGTTGAAACTGTTAGGCTGAAGTACTGCAAAGAAATGAGGCAACGACTGATGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB

Protein Analysis

236

Amino Acids

25.94

Weight (kDa)

7.62

Isoelectric Point (pI)

62.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018215)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000000833 RLG00000007573 RLG00000022809 RLG00000023057
rosa_multiflora	Rmu_sc0002766.1_g000001 Rmu_sc0006697.1_g000004
rosa_roxburghii	Rroxscaffold_4G00323860 Rroxscaffold_7G00199640
rosa_samantha	Rh1DG140400 Rh5BG556000 Rh7DG373900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	388
Acc36I	ACCTGC	1 cut(s)	388
AccB1I	GGYRCC	1 cut(s)	376
AccIII	TCCGGA	1 cut(s)	361
AciI	CCGC	3 cut(s)	63, 83, 111
AcoI	YGGCCR	1 cut(s)	112
AcsI	RAATTY	2 cut(s)	433, 512
AcuI	CTGAAG	1 cut(s)	689
AfaI	GTAC	1 cut(s)	674
AfiI	CCNNNNNNNGG	2 cut(s)	317, 386
AflII	CTTAAG	1 cut(s)	200
AgsI	TTSAA	7 cut(s)	191, 587, 614, 620, 626, 644, 656
AhdI	GACNNNNNGTC	1 cut(s)	357
AhlI	ACTAGT	1 cut(s)	476
AjnI	CCWGG	1 cut(s)	469
AluBI	AGCT	3 cut(s)	25, 89, 275
AluI	AGCT	3 cut(s)	25, 89, 275
Aor13HI	TCCGGA	1 cut(s)	361
AoxI	GGCC	4 cut(s)	112, 320, 368, 419
ApeKI	GCWGC	1 cut(s)	25
ApoI	RAATTY	2 cut(s)	433, 512
Asp700I	GAANNNNTTC	1 cut(s)	133
AspS9I	GGNCC	4 cut(s)	320, 359, 368, 420
AsuHPI	GGTGA	3 cut(s)	231, 476, 502
AvaII	GGWCC	1 cut(s)	359
BanI	GGYRCC	1 cut(s)	376
BbvI	GCAGC	1 cut(s)	12
BccI	CCATC	3 cut(s)	52, 331, 335
BciT130I	CCWGG	1 cut(s)	471
BcuI	ACTAGT	1 cut(s)	476
BfaI	CTAG	5 cut(s)	90, 327, 477, 548, 597
BfrI	CTTAAG	1 cut(s)	200
BfuAI	ACCTGC	1 cut(s)	388
BglII	AGATCT	1 cut(s)	329
BisI	GCNGC	2 cut(s)	26, 112
BlsI	GCNGC	2 cut(s)	27, 113
BmcAI	AGTACT	1 cut(s)	674
Bme1390I	CCNGG	1 cut(s)	471
Bme18I	GGWCC	1 cut(s)	359
BmeRI	GACNNNNNGTC	1 cut(s)	357
BmgT120I	GGNCC	4 cut(s)	320, 359, 368, 420
BmiI	GGNNCC	3 cut(s)	67, 369, 378
BmrFI	CCNGG	1 cut(s)	471
BpmI	CTGGAG	1 cut(s)	119
BsaBI	GATNNNNATC	1 cut(s)	45
BsaJI	CCNNGG	4 cut(s)	264, 385, 416, 440
BsaWI	WCCGGW	1 cut(s)	361
Bsc4I	CCNNNNNNNGG	2 cut(s)	317, 386
Bse8I	GATNNNNATC	1 cut(s)	45
BseAI	TCCGGA	1 cut(s)	361
BseBI	CCWGG	1 cut(s)	471
BseDI	CCNNGG	4 cut(s)	264, 385, 416, 440
BseGI	GGATG	1 cut(s)	643
BseJI	GATNNNNATC	1 cut(s)	45
BseLI	CCNNNNNNNGG	2 cut(s)	317, 386
BseXI	GCAGC	1 cut(s)	12
BshFI	GGCC	4 cut(s)	114, 322, 370, 421
BshNI	GGYRCC	1 cut(s)	376
BsiSI	CCGG	1 cut(s)	362
BslI	CCNNNNNNNGG	2 cut(s)	317, 386
BsnI	GGCC	4 cut(s)	114, 322, 370, 421
Bsp13I	TCCGGA	1 cut(s)	361
Bsp143I	GATC	3 cut(s)	46, 94, 329
BspACI	CCGC	3 cut(s)	63, 83, 111
BspANI	GGCC	4 cut(s)	114, 322, 370, 421
BspEI	TCCGGA	1 cut(s)	361
BspLI	GGNNCC	3 cut(s)	67, 369, 378
BspMI	ACCTGC	1 cut(s)	388
BspQI	GCTCTTC	1 cut(s)	15
BspT107I	GGYRCC	1 cut(s)	376
BspTI	CTTAAG	1 cut(s)	200
BssECI	CCNNGG	4 cut(s)	264, 385, 416, 440
BssMI	GATC	3 cut(s)	46, 94, 329
BssT1I	CCWWGG	2 cut(s)	264, 440
Bst2UI	CCWGG	1 cut(s)	471
Bst4CI	ACNGT	2 cut(s)	594, 661
Bst6I	CTCTTC	2 cut(s)	15, 621
BstAFI	CTTAAG	1 cut(s)	200
BstC8I	GCNNGC	1 cut(s)	109
BstF5I	GGATG	1 cut(s)	643
BstKTI	GATC	3 cut(s)	49, 97, 332
BstMBI	GATC	3 cut(s)	46, 94, 329
BstNI	CCWGG	1 cut(s)	471
BstSCI	CCNGG	1 cut(s)	469
BstV1I	GCAGC	1 cut(s)	12
BstX2I	RGATCY	1 cut(s)	329
BstYI	RGATCY	1 cut(s)	329
BsuRI	GGCC	4 cut(s)	114, 322, 370, 421
BtsCI	GGATG	1 cut(s)	643
BtsIMutI	CAGTG	1 cut(s)	11
BveI	ACCTGC	1 cut(s)	388
Cac8I	GCNNGC	1 cut(s)	109
Cfr13I	GGNCC	4 cut(s)	320, 359, 368, 420
CseI	GACGC	1 cut(s)	17
Csp6I	GTAC	1 cut(s)	673
CspCI	CAANNNNNGTGG	2 cut(s)	429, 464
CviQI	GTAC	1 cut(s)	673
DpnI	GATC	3 cut(s)	48, 96, 331
DpnII	GATC	3 cut(s)	46, 94, 329
DriI	GACNNNNNGTC	1 cut(s)	357
EaeI	YGGCCR	1 cut(s)	112
Eam1104I	CTCTTC	2 cut(s)	15, 621
Eam1105I	GACNNNNNGTC	1 cut(s)	357
EarI	CTCTTC	2 cut(s)	15, 621
EciI	GGCGGA	2 cut(s)	78, 98
Eco130I	CCWWGG	2 cut(s)	264, 440
Eco47I	GGWCC	1 cut(s)	359
Eco57I	CTGAAG	1 cut(s)	689
EcoRII	CCWGG	1 cut(s)	469
EcoT14I	CCWWGG	2 cut(s)	264, 440
ErhI	CCWWGG	2 cut(s)	264, 440
FaiI	YATR	6 cut(s)	210, 279, 293, 485, 649, 651
Fnu4HI	GCNGC	2 cut(s)	26, 112
FokI	GGATG	1 cut(s)	650
Fsp4HI	GCNGC	2 cut(s)	26, 112
FspBI	CTAG	5 cut(s)	90, 327, 477, 548, 597
GluI	GCNGC	2 cut(s)	26, 112
GsuI	CTGGAG	1 cut(s)	119
HaeIII	GGCC	4 cut(s)	114, 322, 370, 421
HapII	CCGG	1 cut(s)	362
HgaI	GACGC	1 cut(s)	17
HinfI	GANTC	1 cut(s)	352
HpaII	CCGG	1 cut(s)	362
HphI	GGTGA	3 cut(s)	231, 476, 502
Hpy166II	GTNNAC	1 cut(s)	535
Hpy188I	TCNGA	3 cut(s)	40, 340, 417
Hpy188III	TCNNGA	3 cut(s)	98, 327, 362
Hpy8I	GTNNAC	1 cut(s)	535
HpyAV	CCTTC	3 cut(s)	149, 183, 481
HpyCH4III	ACNGT	2 cut(s)	594, 661
HpyCH4V	TGCA	2 cut(s)	404, 678
Kpn2I	TCCGGA	1 cut(s)	361
Kzo9I	GATC	3 cut(s)	46, 94, 329
LguI	GCTCTTC	1 cut(s)	15
Lsp1109I	GCAGC	1 cut(s)	12
MaeI	CTAG	5 cut(s)	90, 327, 477, 548, 597
MaeIII	GTNAC	2 cut(s)	145, 344
MalI	GATC	3 cut(s)	48, 96, 331
MboI	GATC	3 cut(s)	46, 94, 329
MboII	GAAGA	3 cut(s)	32, 63, 638
MfeI	CAATTG	1 cut(s)	453
MflI	RGATCY	1 cut(s)	329
MluCI	AATT	5 cut(s)	433, 453, 512, 615, 621
MlyI	GAGTC	1 cut(s)	346
MnlI	CCTC	9 cut(s)	94, 244, 264, 358, 367, 395, 411, 628, 681
MroI	TCCGGA	1 cut(s)	361
MroXI	GAANNNNTTC	1 cut(s)	133
MseI	TTAA	2 cut(s)	201, 528
MslI	CAYNNNNRTG	1 cut(s)	540
MspCI	CTTAAG	1 cut(s)	200
MspI	CCGG	1 cut(s)	362
MspR9I	CCNGG	1 cut(s)	471
MunI	CAATTG	1 cut(s)	453
MvaI	CCWGG	1 cut(s)	471
NdeII	GATC	3 cut(s)	46, 94, 329
NlaIV	GGNNCC	3 cut(s)	67, 369, 378
NmuCI	GTSAC	1 cut(s)	344
PaqCI	CACCTGC	1 cut(s)	388
PciSI	GCTCTTC	1 cut(s)	15
PdmI	GAANNNNTTC	1 cut(s)	133
PkrI	GCNGC	2 cut(s)	27, 113
PleI	GAGTC	1 cut(s)	346
PpsI	GAGTC	1 cut(s)	346
Psp6I	CCWGG	1 cut(s)	469
PspGI	CCWGG	1 cut(s)	469
PspN4I	GGNNCC	3 cut(s)	67, 369, 378
PspPI	GGNCC	4 cut(s)	320, 359, 368, 420
PsuI	RGATCY	1 cut(s)	329
RsaI	GTAC	1 cut(s)	674
RsaNI	GTAC	1 cut(s)	673
RseI	CAYNNNNRTG	1 cut(s)	540
SapI	GCTCTTC	1 cut(s)	15
SaqAI	TTAA	2 cut(s)	201, 528
SatI	GCNGC	2 cut(s)	26, 112
Sau3AI	GATC	3 cut(s)	46, 94, 329
Sau96I	GGNCC	4 cut(s)	320, 359, 368, 420
ScaI	AGTACT	1 cut(s)	674
SchI	GAGTC	1 cut(s)	346
ScrFI	CCNGG	1 cut(s)	471
SinI	GGWCC	1 cut(s)	359
SmiMI	CAYNNNNRTG	1 cut(s)	540
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
SpeI	ACTAGT	1 cut(s)	476
Sse9I	AATT	5 cut(s)	433, 453, 512, 615, 621
SsiI	CCGC	3 cut(s)	63, 83, 111
SspMI	CTAG	5 cut(s)	90, 327, 477, 548, 597
StyD4I	CCNGG	1 cut(s)	469
StyI	CCWWGG	2 cut(s)	264, 440
TaaI	ACNGT	2 cut(s)	594, 661
TaqI	TCGA	3 cut(s)	49, 137, 429
TasI	AATT	5 cut(s)	433, 453, 512, 615, 621
TatI	WGTACW	1 cut(s)	672
TauI	GCSGC	1 cut(s)	114
Tru1I	TTAA	2 cut(s)	201, 528
Tru9I	TTAA	2 cut(s)	201, 528
TscAI	CASTG	1 cut(s)	18
TseFI	GTSAC	1 cut(s)	344
TseI	GCWGC	1 cut(s)	25
Tsp45I	GTSAC	1 cut(s)	344
TspDTI	ATGAA	3 cut(s)	315, 500, 591
TspGWI	ACGGA	1 cut(s)	133
TspRI	CASTG	1 cut(s)	18
Vha464I	CTTAAG	1 cut(s)	200
VpaK11BI	GGWCC	1 cut(s)	359
XapI	RAATTY	2 cut(s)	433, 512
XbaI	TCTAGA	1 cut(s)	326
XcmI	CCANNNNNNNNNTGG	1 cut(s)	159
XmnI	GAANNNNTTC	1 cut(s)	133
XspI	CTAG	5 cut(s)	90, 327, 477, 548, 597
ZrmI	AGTACT	1 cut(s)	674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.