Rh5BG556000

BTB POZ domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Reverse (-)
88486255 .. 88487271
1017 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG556000.1

Sequence Viewer

Length: 321 bp
ATGGCTGCAGAGAGAGTTCCGAGGCCCAAAGTCGAAAATTTGCTGAGGAAGGTGGCAATTGAGTTTGGTGAGCCTGGAACTAGTGATATGAAGGTGATTTTACTTGGGAAGCAGGGATTTTGTGTGAAGTTGAGTGTTCACAAGAATGTTCTAGTGGAAGACAAAGAACTTTTGGGTGGTAACCATATATTATTAGCTATCTTGGTTGCTACATATGCAGCTCAATCACAGGCAGGCACAAAAGAGCTCACCTCTAAGGGAAGGAAAATAAAATGCAAGATACTAGCTCTCATGGAAGAGAAACAATTGACTTTTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

106

Amino Acids

11.66

Weight (kDa)

9.52

Isoelectric Point (pI)

43.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 37
AhlI ACTAGT 1 cut(s) 80
AjnI CCWGG 1 cut(s) 73
AluBI AGCT 4 cut(s) 197, 221, 247, 287
AluI AGCT 4 cut(s) 197, 221, 247, 287
Alw21I GWGCWC 1 cut(s) 249
AoxI GGCC 1 cut(s) 23
ApeKI GCWGC 2 cut(s) 5, 218
ApoI RAATTY 1 cut(s) 37
AspS9I GGNCC 1 cut(s) 24
AsuHPI GGTGA 3 cut(s) 80, 106, 241
BanII GRGCYC 1 cut(s) 249
BbsI GAAGAC 1 cut(s) 165
Bbv12I GWGCWC 1 cut(s) 249
BbvCI CCTCAGC 1 cut(s) 44
BbvI GCAGC 1 cut(s) 230
BciT130I CCWGG 1 cut(s) 75
BcuI ACTAGT 1 cut(s) 80
BfaI CTAG 3 cut(s) 81, 152, 284
BfmI CTRYAG 1 cut(s) 6
BisI GCNGC 2 cut(s) 6, 219
BlsI GCNGC 2 cut(s) 7, 220
Bme1390I CCNGG 1 cut(s) 75
BmgT120I GGNCC 1 cut(s) 24
BmrFI CCNGG 1 cut(s) 75
BpiI GAAGAC 1 cut(s) 165
BplI GAGNNNNNCTC 2 cut(s) 236, 268
Bpu10I CCTNAGC 1 cut(s) 44
BsaJI CCNNGG 1 cut(s) 20
BseBI CCWGG 1 cut(s) 75
BseDI CCNNGG 1 cut(s) 20
BseMII CTCAG 1 cut(s) 35
BseXI GCAGC 1 cut(s) 230
BshFI GGCC 1 cut(s) 25
BsiHKAI GWGCWC 1 cut(s) 249
BsnI GGCC 1 cut(s) 25
Bsp1286I GDGCHC 1 cut(s) 249
BspANI GGCC 1 cut(s) 25
BspCNI CTCAG 1 cut(s) 36
BspMAI CTGCAG 1 cut(s) 10
BssECI CCNNGG 1 cut(s) 20
Bst2UI CCWGG 1 cut(s) 75
Bst6I CTCTTC 1 cut(s) 291
BstC8I GCNNGC 1 cut(s) 235
BstDEI CTNAG 2 cut(s) 44, 255
BstEII GGTNACC 1 cut(s) 179
BstMWI GCNNNNNNNGC 1 cut(s) 215
BstNI CCWGG 1 cut(s) 75
BstPI GGTNACC 1 cut(s) 179
BstSCI CCNGG 1 cut(s) 73
BstSFI CTRYAG 1 cut(s) 6
BstV1I GCAGC 1 cut(s) 230
BstV2I GAAGAC 1 cut(s) 165
BsuRI GGCC 1 cut(s) 25
Cac8I GCNNGC 1 cut(s) 235
Cfr13I GGNCC 1 cut(s) 24
CviAII CATG 1 cut(s) 292
CviJI RGCY 7 cut(s) 5, 25, 73, 197, 221, 247, 287
CviKI_1 RGCY 7 cut(s) 5, 25, 73, 197, 221, 247, 287
DdeI CTNAG 2 cut(s) 44, 255
Eam1104I CTCTTC 1 cut(s) 291
EarI CTCTTC 1 cut(s) 291
Ecl136II GAGCTC 1 cut(s) 247
Eco24I GRGCYC 1 cut(s) 249
Eco53kI GAGCTC 1 cut(s) 247
Eco91I GGTNACC 1 cut(s) 179
EcoICRI GAGCTC 1 cut(s) 247
EcoO65I GGTNACC 1 cut(s) 179
EcoRII CCWGG 1 cut(s) 73
EcoT38I GRGCYC 1 cut(s) 249
FaeI CATG 1 cut(s) 295
FaiI YATR 6 cut(s) 89, 186, 188, 214, 216, 293
FatI CATG 1 cut(s) 291
FauNDI CATATG 1 cut(s) 214
Fnu4HI GCNGC 2 cut(s) 6, 219
FriOI GRGCYC 1 cut(s) 249
Fsp4HI GCNGC 2 cut(s) 6, 219
FspBI CTAG 3 cut(s) 81, 152, 284
GluI GCNGC 2 cut(s) 6, 219
HaeIII GGCC 1 cut(s) 25
Hin1II CATG 1 cut(s) 295
HphI GGTGA 3 cut(s) 80, 106, 241
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 1 cut(s) 21
Hpy8I GTNNAC 1 cut(s) 139
HpyAV CCTTC 3 cut(s) 43, 85, 255
HpyCH4V TGCA 3 cut(s) 8, 218, 276
HpyF10VI GCNNNNNNNGC 1 cut(s) 215
HpyF3I CTNAG 2 cut(s) 44, 255
Hsp92II CATG 1 cut(s) 295
LpnPI CCDG 5 cut(s) 60, 87, 98, 215, 219
Lsp1109I GCAGC 1 cut(s) 230
MaeI CTAG 3 cut(s) 81, 152, 284
MaeIII GTNAC 1 cut(s) 179
MboII GAAGA 2 cut(s) 170, 308
MfeI CAATTG 2 cut(s) 57, 305
MhlI GDGCHC 1 cut(s) 249
MluCI AATT 4 cut(s) 37, 57, 305, 316
MnlI CCTC 3 cut(s) 15, 39, 262
MseI TTAA 2 cut(s) 315, 319
MslI CAYNNNNRTG 1 cut(s) 144
MspR9I CCNGG 1 cut(s) 75
MunI CAATTG 2 cut(s) 57, 305
MvaI CCWGG 1 cut(s) 75
MwoI GCNNNNNNNGC 1 cut(s) 215
NdeI CATATG 1 cut(s) 214
NlaIII CATG 1 cut(s) 295
PacI TTAATTAA 1 cut(s) 319
PkrI GCNGC 2 cut(s) 7, 220
Psp124BI GAGCTC 1 cut(s) 249
Psp6I CCWGG 1 cut(s) 73
PspEI GGTNACC 1 cut(s) 179
PspGI CCWGG 1 cut(s) 73
PspPI GGNCC 1 cut(s) 24
PstI CTGCAG 1 cut(s) 10
RseI CAYNNNNRTG 1 cut(s) 144
SacI GAGCTC 1 cut(s) 249
SaqAI TTAA 2 cut(s) 315, 319
SatI GCNGC 2 cut(s) 6, 219
Sau96I GGNCC 1 cut(s) 24
ScrFI CCNGG 1 cut(s) 75
SduI GDGCHC 1 cut(s) 249
SetI ASST 7 cut(s) 54, 96, 199, 223, 249, 254, 289
SfcI CTRYAG 1 cut(s) 6
SmiMI CAYNNNNRTG 1 cut(s) 144
SpeI ACTAGT 1 cut(s) 80
Sse9I AATT 4 cut(s) 37, 57, 305, 316
SspMI CTAG 3 cut(s) 81, 152, 284
SstI GAGCTC 1 cut(s) 249
StyD4I CCNGG 1 cut(s) 73
TaqI TCGA 1 cut(s) 33
TasI AATT 4 cut(s) 37, 57, 305, 316
Tru1I TTAA 2 cut(s) 315, 319
Tru9I TTAA 2 cut(s) 315, 319
TseI GCWGC 2 cut(s) 5, 218
TspDTI ATGAA 1 cut(s) 104
XapI RAATTY 1 cut(s) 37
XspI CTAG 3 cut(s) 81, 152, 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.