Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0018215

Physical Location & Seq

Genomic Coordinates Reverse (-)

12558436 .. 12559086

Gene Structure 651 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022809

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGCTGAAATTAGACTGACGAAGGTAGAACAAGGCCAAACCAAGATTAGAAATGTTCCGATTGTCGTAACCCCAGAAGGTTTTTGGTGTCGTCCTTCTCCTATTGCGTTTCAAAAGACCCTTAAGGCTCATAACTCTCTACACAAACCCAAGTCCTCATCACCACCACCACCTCCACCACCCAAGACAATAGCTCACAGAAAACAAACTATACTGAATGAAAAGAAGCCAACTTTCAGGCCATCTAGATCTATTTCTGATGGTCAAAGGACTCTTGGTCCGGAGGCGCCAGAGGCACCTGCCCTCGGTGCATCTTTGGTTGCAGAGAGAGTTCCGAGGCCCAAAGTCAAAAATTTGTCGAGGAAGGTGGCAATTGAGTTTGGTGAGCCTGGAACTAGTGATATGAAGATGTTTTGTTGTTGGTTGTGCTTCAATGCCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB

Protein Analysis

148

Amino Acids

16.29

Weight (kDa)

10.14

Isoelectric Point (pI)

60.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018215)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000000833 RLG00000007573 RLG00000022809 RLG00000023057
rosa_multiflora	Rmu_sc0002766.1_g000001 Rmu_sc0006697.1_g000004
rosa_roxburghii	Rroxscaffold_4G00323860 Rroxscaffold_7G00199640
rosa_samantha	Rh1DG140400 Rh5BG556000 Rh7DG373900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	307
Acc36I	ACCTGC	1 cut(s)	307
AccB1I	GGYRCC	2 cut(s)	286, 295
AccIII	TCCGGA	1 cut(s)	280
AcsI	RAATTY	1 cut(s)	352
AcyI	GRCGYC	1 cut(s)	287
AfiI	CCNNNNNNNGG	1 cut(s)	305
AflII	CTTAAG	1 cut(s)	122
AgsI	TTSAA	2 cut(s)	113, 433
AhdI	GACNNNNNGTC	1 cut(s)	276
AhlI	ACTAGT	1 cut(s)	395
AjnI	CCWGG	1 cut(s)	388
AluBI	AGCT	1 cut(s)	194
AluI	AGCT	1 cut(s)	194
Aor13HI	TCCGGA	1 cut(s)	280
AoxI	GGCC	3 cut(s)	34, 239, 338
ApoI	RAATTY	1 cut(s)	352
AspLEI	GCGC	1 cut(s)	289
AspS9I	GGNCC	2 cut(s)	278, 339
AsuHPI	GGTGA	2 cut(s)	153, 395
AvaII	GGWCC	1 cut(s)	278
BanI	GGYRCC	2 cut(s)	286, 295
BccI	CCATC	2 cut(s)	250, 254
BciT130I	CCWGG	1 cut(s)	390
BcuI	ACTAGT	1 cut(s)	395
BfaI	CTAG	2 cut(s)	246, 396
BfoI	RGCGCY	1 cut(s)	290
BfrI	CTTAAG	1 cut(s)	122
BfuAI	ACCTGC	1 cut(s)	307
BglII	AGATCT	1 cut(s)	248
Bme1390I	CCNGG	1 cut(s)	390
Bme18I	GGWCC	1 cut(s)	278
BmeRI	GACNNNNNGTC	1 cut(s)	276
BmgT120I	GGNCC	2 cut(s)	278, 339
BmiI	GGNNCC	2 cut(s)	288, 297
BmrFI	CCNGG	1 cut(s)	390
BmsI	GCATC	1 cut(s)	320
BsaHI	GRCGYC	1 cut(s)	287
BsaJI	CCNNGG	2 cut(s)	304, 335
BsaWI	WCCGGW	1 cut(s)	280
Bsc4I	CCNNNNNNNGG	1 cut(s)	305
BseAI	TCCGGA	1 cut(s)	280
BseBI	CCWGG	1 cut(s)	390
BseDI	CCNNGG	2 cut(s)	304, 335
BseLI	CCNNNNNNNGG	1 cut(s)	305
BshFI	GGCC	3 cut(s)	36, 241, 340
BshNI	GGYRCC	2 cut(s)	286, 295
BsiSI	CCGG	1 cut(s)	281
BslI	CCNNNNNNNGG	1 cut(s)	305
BsnI	GGCC	3 cut(s)	36, 241, 340
Bsp13I	TCCGGA	1 cut(s)	280
Bsp143I	GATC	1 cut(s)	248
BspANI	GGCC	3 cut(s)	36, 241, 340
BspEI	TCCGGA	1 cut(s)	280
BspLI	GGNNCC	2 cut(s)	288, 297
BspMI	ACCTGC	1 cut(s)	307
BspT107I	GGYRCC	2 cut(s)	286, 295
BspTI	CTTAAG	1 cut(s)	122
BssECI	CCNNGG	2 cut(s)	304, 335
BssMI	GATC	1 cut(s)	248
BssNI	GRCGYC	1 cut(s)	287
Bst2UI	CCWGG	1 cut(s)	390
BstACI	GRCGYC	1 cut(s)	287
BstAFI	CTTAAG	1 cut(s)	122
BstH2I	RGCGCY	1 cut(s)	290
BstHHI	GCGC	1 cut(s)	289
BstKTI	GATC	1 cut(s)	251
BstMBI	GATC	1 cut(s)	248
BstMWI	GCNNNNNNNGC	2 cut(s)	293, 308
BstNI	CCWGG	1 cut(s)	390
BstSCI	CCNGG	1 cut(s)	388
BstX2I	RGATCY	1 cut(s)	248
BstYI	RGATCY	1 cut(s)	248
BsuRI	GGCC	3 cut(s)	36, 241, 340
BveI	ACCTGC	1 cut(s)	307
CfoI	GCGC	1 cut(s)	289
Cfr13I	GGNCC	2 cut(s)	278, 339
CviAII	CATG	1 cut(s)	439
CviJI	RGCY	8 cut(s)	5, 36, 128, 194, 229, 241, 340, 388
CviKI_1	RGCY	8 cut(s)	5, 36, 128, 194, 229, 241, 340, 388
DinI	GGCGCC	1 cut(s)	288
DpnI	GATC	1 cut(s)	250
DpnII	GATC	1 cut(s)	248
DriI	GACNNNNNGTC	1 cut(s)	276
Eam1105I	GACNNNNNGTC	1 cut(s)	276
Eco47I	GGWCC	1 cut(s)	278
EcoRII	CCWGG	1 cut(s)	388
EgeI	GGCGCC	1 cut(s)	288
EheI	GGCGCC	1 cut(s)	288
FaeI	CATG	1 cut(s)	442
FaiI	YATR	4 cut(s)	132, 212, 404, 440
FatI	CATG	1 cut(s)	438
FspBI	CTAG	2 cut(s)	246, 396
GlaI	GCGC	1 cut(s)	288
HaeII	RGCGCY	1 cut(s)	290
HaeIII	GGCC	3 cut(s)	36, 241, 340
HapII	CCGG	1 cut(s)	281
HhaI	GCGC	1 cut(s)	289
Hin1I	GRCGYC	1 cut(s)	287
Hin1II	CATG	1 cut(s)	442
Hin6I	GCGC	1 cut(s)	287
HinP1I	GCGC	1 cut(s)	287
HinfI	GANTC	1 cut(s)	271
HpaII	CCGG	1 cut(s)	281
HphI	GGTGA	2 cut(s)	153, 395
Hpy188I	TCNGA	3 cut(s)	60, 259, 336
Hpy188III	TCNNGA	2 cut(s)	246, 281
HpyAV	CCTTC	4 cut(s)	16, 71, 105, 358
HpyCH4V	TGCA	2 cut(s)	311, 323
HpyF10VI	GCNNNNNNNGC	2 cut(s)	293, 308
Hsp92I	GRCGYC	1 cut(s)	287
Hsp92II	CATG	1 cut(s)	442
HspAI	GCGC	1 cut(s)	287
KasI	GGCGCC	1 cut(s)	286
Kpn2I	TCCGGA	1 cut(s)	280
Kzo9I	GATC	1 cut(s)	248
LpnPI	CCDG	7 cut(s)	87, 223, 294, 303, 312, 375, 402
LweI	GCATC	1 cut(s)	320
MaeI	CTAG	2 cut(s)	246, 396
MaeIII	GTNAC	1 cut(s)	67
MalI	GATC	1 cut(s)	250
MboI	GATC	1 cut(s)	248
MboII	GAAGA	1 cut(s)	418
MfeI	CAATTG	1 cut(s)	372
MflI	RGATCY	1 cut(s)	248
MluCI	AATT	3 cut(s)	9, 352, 372
Mly113I	GGCGCC	1 cut(s)	287
MlyI	GAGTC	1 cut(s)	265
MnlI	CCTC	7 cut(s)	166, 183, 277, 286, 314, 330, 354
MroI	TCCGGA	1 cut(s)	280
MseI	TTAA	1 cut(s)	123
MspCI	CTTAAG	1 cut(s)	122
MspI	CCGG	1 cut(s)	281
MspR9I	CCNGG	1 cut(s)	390
MunI	CAATTG	1 cut(s)	372
MvaI	CCWGG	1 cut(s)	390
MwoI	GCNNNNNNNGC	2 cut(s)	293, 308
NarI	GGCGCC	1 cut(s)	287
NdeII	GATC	1 cut(s)	248
NlaIII	CATG	1 cut(s)	442
NlaIV	GGNNCC	2 cut(s)	288, 297
PaqCI	CACCTGC	1 cut(s)	307
PleI	GAGTC	1 cut(s)	265
PluTI	GGCGCC	1 cut(s)	290
PpsI	GAGTC	1 cut(s)	265
Psp6I	CCWGG	1 cut(s)	388
PspGI	CCWGG	1 cut(s)	388
PspN4I	GGNNCC	2 cut(s)	288, 297
PspPI	GGNCC	2 cut(s)	278, 339
PsuI	RGATCY	1 cut(s)	248
SaqAI	TTAA	1 cut(s)	123
Sau3AI	GATC	1 cut(s)	248
Sau96I	GGNCC	2 cut(s)	278, 339
SchI	GAGTC	1 cut(s)	265
ScrFI	CCNGG	1 cut(s)	390
SetI	ASST	6 cut(s)	27, 82, 175, 196, 301, 369
SfaNI	GCATC	1 cut(s)	320
SfoI	GGCGCC	1 cut(s)	288
SinI	GGWCC	1 cut(s)	278
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
SpeI	ACTAGT	1 cut(s)	395
Sse9I	AATT	3 cut(s)	9, 352, 372
SspDI	GGCGCC	1 cut(s)	286
SspMI	CTAG	2 cut(s)	246, 396
StyD4I	CCNGG	1 cut(s)	388
TaqI	TCGA	1 cut(s)	359
TasI	AATT	3 cut(s)	9, 352, 372
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TspDTI	ATGAA	2 cut(s)	234, 419
Vha464I	CTTAAG	1 cut(s)	122
VpaK11BI	GGWCC	1 cut(s)	278
XapI	RAATTY	1 cut(s)	352
XbaI	TCTAGA	1 cut(s)	245
XcmI	CCANNNNNNNNNTGG	1 cut(s)	81
XspI	CTAG	2 cut(s)	246, 396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.