RLG00000023057

BTB POZ domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Reverse (-)
17470854 .. 17471525
672 bp
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UTR
Exon/CDS
Intron
RLM00000023057

Sequence Viewer

Length: 453 bp
ATGGCTGAAATTAGACTTACAAAGGTAGAACAAGGCCAAACCAAGACTAGGAATGTTCCAATTGCCGCGCCAGAGGCACCTGCCCTCAGTGCATCTTTGGTTGTAGAGAGAGTTCCGAGGCCCAAAGTCGAAAATTTGCCGAGGAAGGTGGCAATTGAGTTTGGTGAGCCTAGAACTAGTGATATGAAGGTGATTTTACTTGGGAAGCAGGGATTTTGTGTGAAGTTGAGTGTTCACAAGAATGTTCTAGTGGAGAATAGCAACTTTTTCGCTGACAAACTTGCTGAAGAACAGTCTAGTTCGTCGTGCCTTGAAATTGAAGAGTGCGAGGATGTTGAAATATATATTGAAACTGTTGGGCTGATGTACTGCAAAGAAATGAGGCAACGGCTGATGAAGCAAAGCGTTTCTTGCATACTTCGAATTCTGAAGGTAAAATGCAGAACTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

151

Amino Acids

16.91

Weight (kDa)

8.54

Isoelectric Point (pI)

63.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 88
Acc36I ACCTGC 1 cut(s) 88
AccB1I GGYRCC 1 cut(s) 76
AccII CGCG 1 cut(s) 68
AciI CCGC 1 cut(s) 66
AcsI RAATTY 2 cut(s) 133, 423
AcuI CTGAAG 2 cut(s) 306, 449
AfaI GTAC 1 cut(s) 368
AfiI CCNNNNNNNGG 1 cut(s) 48
AgsI TTSAA 4 cut(s) 314, 320, 338, 350
AhlI ACTAGT 1 cut(s) 176
AoxI GGCC 2 cut(s) 34, 119
ApoI RAATTY 2 cut(s) 133, 423
AspLEI GCGC 1 cut(s) 70
AspS9I GGNCC 1 cut(s) 120
AsuHPI GGTGA 2 cut(s) 176, 202
AsuII TTCGAA 1 cut(s) 421
BanI GGYRCC 1 cut(s) 76
BceAI ACGGC 1 cut(s) 404
BcgI CGANNNNNNTGC 2 cut(s) 250, 284
BcuI ACTAGT 1 cut(s) 176
BfaI CTAG 5 cut(s) 48, 171, 177, 248, 297
BfuAI ACCTGC 1 cut(s) 88
BisI GCNGC 1 cut(s) 66
BlsI GCNGC 1 cut(s) 67
BmgT120I GGNCC 1 cut(s) 120
BmiI GGNNCC 1 cut(s) 78
BmsI GCATC 1 cut(s) 101
Bpu14I TTCGAA 1 cut(s) 421
BsaJI CCNNGG 2 cut(s) 116, 140
Bsc4I CCNNNNNNNGG 1 cut(s) 48
BseDI CCNNGG 2 cut(s) 116, 140
BseGI GGATG 1 cut(s) 337
BseLI CCNNNNNNNGG 1 cut(s) 48
BseMII CTCAG 1 cut(s) 100
Bsh1236I CGCG 1 cut(s) 68
BshFI GGCC 2 cut(s) 36, 121
BshNI GGYRCC 1 cut(s) 76
BslI CCNNNNNNNGG 1 cut(s) 48
BsnI GGCC 2 cut(s) 36, 121
Bsp119I TTCGAA 1 cut(s) 421
BspACI CCGC 1 cut(s) 66
BspANI GGCC 2 cut(s) 36, 121
BspCNI CTCAG 1 cut(s) 99
BspFNI CGCG 1 cut(s) 68
BspLI GGNNCC 1 cut(s) 78
BspMI ACCTGC 1 cut(s) 88
BspT104I TTCGAA 1 cut(s) 421
BspT107I GGYRCC 1 cut(s) 76
BssECI CCNNGG 2 cut(s) 116, 140
Bst4CI ACNGT 3 cut(s) 294, 355, 448
Bst6I CTCTTC 1 cut(s) 315
BstBI TTCGAA 1 cut(s) 421
BstDEI CTNAG 1 cut(s) 86
BstF5I GGATG 1 cut(s) 337
BstFNI CGCG 1 cut(s) 68
BstHHI GCGC 1 cut(s) 70
BstMWI GCNNNNNNNGC 4 cut(s) 74, 89, 397, 411
BstUI CGCG 1 cut(s) 68
BsuRI GGCC 2 cut(s) 36, 121
BtsCI GGATG 1 cut(s) 337
BtsIMutI CAGTG 1 cut(s) 94
BveI ACCTGC 1 cut(s) 88
CfoI GCGC 1 cut(s) 70
Cfr13I GGNCC 1 cut(s) 120
Csp6I GTAC 1 cut(s) 367
CviJI RGCY 6 cut(s) 5, 36, 121, 169, 361, 391
CviKI_1 RGCY 6 cut(s) 5, 36, 121, 169, 361, 391
CviQI GTAC 1 cut(s) 367
DdeI CTNAG 1 cut(s) 86
Eam1104I CTCTTC 1 cut(s) 315
EarI CTCTTC 1 cut(s) 315
Eco57I CTGAAG 2 cut(s) 306, 449
EcoRI GAATTC 1 cut(s) 423
FaiI YATR 4 cut(s) 185, 343, 345, 416
FalI AAGNNNNNCTT 2 cut(s) 394, 426
Fnu4HI GCNGC 1 cut(s) 66
FokI GGATG 1 cut(s) 344
Fsp4HI GCNGC 1 cut(s) 66
FspBI CTAG 5 cut(s) 48, 171, 177, 248, 297
GlaI GCGC 1 cut(s) 69
GluI GCNGC 1 cut(s) 66
HaeIII GGCC 2 cut(s) 36, 121
HhaI GCGC 1 cut(s) 70
Hin6I GCGC 1 cut(s) 68
HinP1I GCGC 1 cut(s) 68
HphI GGTGA 2 cut(s) 176, 202
Hpy166II GTNNAC 1 cut(s) 235
Hpy188I TCNGA 2 cut(s) 117, 429
Hpy8I GTNNAC 1 cut(s) 235
Hpy99I CGWCG 1 cut(s) 307
HpyAV CCTTC 3 cut(s) 139, 181, 424
HpyCH4III ACNGT 3 cut(s) 294, 355, 448
HpyCH4V TGCA 4 cut(s) 92, 372, 414, 441
HpyF10VI GCNNNNNNNGC 4 cut(s) 74, 89, 397, 411
HpyF3I CTNAG 1 cut(s) 86
HspAI GCGC 1 cut(s) 68
LpnPI CCDG 3 cut(s) 84, 93, 194
LweI GCATC 1 cut(s) 101
MaeI CTAG 5 cut(s) 48, 171, 177, 248, 297
MboII GAAGA 2 cut(s) 299, 332
MfeI CAATTG 2 cut(s) 60, 153
MluCI AATT 6 cut(s) 9, 60, 133, 153, 315, 423
MnlI CCTC 6 cut(s) 67, 95, 111, 135, 322, 375
MslI CAYNNNNRTG 1 cut(s) 240
MunI CAATTG 2 cut(s) 60, 153
MvnI CGCG 1 cut(s) 68
MwoI GCNNNNNNNGC 4 cut(s) 74, 89, 397, 411
NlaIV GGNNCC 1 cut(s) 78
NmeAIII GCCGAG 1 cut(s) 165
NspV TTCGAA 1 cut(s) 421
PaqCI CACCTGC 1 cut(s) 88
PkrI GCNGC 1 cut(s) 67
PspN4I GGNNCC 1 cut(s) 78
PspPI GGNCC 1 cut(s) 120
PsrI GAACNNNNNNTAC 2 cut(s) 96, 128
RsaI GTAC 1 cut(s) 368
RsaNI GTAC 1 cut(s) 367
RseI CAYNNNNRTG 1 cut(s) 240
SatI GCNGC 1 cut(s) 66
Sau96I GGNCC 1 cut(s) 120
SetI ASST 5 cut(s) 27, 82, 150, 192, 435
SfaNI GCATC 1 cut(s) 101
SfuI TTCGAA 1 cut(s) 421
SmiMI CAYNNNNRTG 1 cut(s) 240
SpeI ACTAGT 1 cut(s) 176
Sse9I AATT 6 cut(s) 9, 60, 133, 153, 315, 423
SsiI CCGC 1 cut(s) 66
SspMI CTAG 5 cut(s) 48, 171, 177, 248, 297
TaaI ACNGT 3 cut(s) 294, 355, 448
TaqI TCGA 2 cut(s) 129, 421
TasI AATT 6 cut(s) 9, 60, 133, 153, 315, 423
TatI WGTACW 1 cut(s) 366
TauI GCSGC 1 cut(s) 68
TscAI CASTG 1 cut(s) 94
TspDTI ATGAA 2 cut(s) 200, 410
TspRI CASTG 1 cut(s) 94
XapI RAATTY 2 cut(s) 133, 423
XspI CTAG 5 cut(s) 48, 171, 177, 248, 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.