Rroxscaffold_4G00323860

BTB POZ domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
55051583 .. 55054225
2643 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00323860.1

Sequence Viewer

Length: 207 bp
ATGGCTGCAGAGAGAGTTCCGAGGCCCAAAGTTGAAAATTTGCCGAGGAAGGTGGCAATTGAGTTTGGTGAGCCTGGAACTAGTGATATGAAGGTGATTTTACTTCGGAAGCAGGGATTTTGTGTGAAGTTGAGTGTTCACAAGAATTTTCTAGTGGAAGACAAAGAACTTTTGGGTGGTAACCATATATTATTAGTATGTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

68

Amino Acids

7.62

Weight (kDa)

8.96

Isoelectric Point (pI)

40.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 37, 145
AgsI TTSAA 1 cut(s) 35
AhlI ACTAGT 1 cut(s) 80
AjnI CCWGG 1 cut(s) 73
AoxI GGCC 1 cut(s) 23
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 2 cut(s) 37, 145
AspS9I GGNCC 1 cut(s) 24
AsuHPI GGTGA 2 cut(s) 80, 106
BbsI GAAGAC 1 cut(s) 165
BciT130I CCWGG 1 cut(s) 75
BcuI ACTAGT 1 cut(s) 80
BfaI CTAG 2 cut(s) 81, 152
BfmI CTRYAG 1 cut(s) 6
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 75
BmgT120I GGNCC 1 cut(s) 24
BmrFI CCNGG 1 cut(s) 75
BpiI GAAGAC 1 cut(s) 165
BsaJI CCNNGG 2 cut(s) 20, 44
BseBI CCWGG 1 cut(s) 75
BseDI CCNNGG 2 cut(s) 20, 44
BshFI GGCC 1 cut(s) 25
BsnI GGCC 1 cut(s) 25
BspANI GGCC 1 cut(s) 25
BspMAI CTGCAG 1 cut(s) 10
BssECI CCNNGG 2 cut(s) 20, 44
Bst2UI CCWGG 1 cut(s) 75
BstEII GGTNACC 1 cut(s) 179
BstNI CCWGG 1 cut(s) 75
BstPI GGTNACC 1 cut(s) 179
BstSCI CCNGG 1 cut(s) 73
BstSFI CTRYAG 1 cut(s) 6
BstV2I GAAGAC 1 cut(s) 165
BsuRI GGCC 1 cut(s) 25
Cfr13I GGNCC 1 cut(s) 24
CviJI RGCY 3 cut(s) 5, 25, 73
CviKI_1 RGCY 3 cut(s) 5, 25, 73
Eco91I GGTNACC 1 cut(s) 179
EcoO65I GGTNACC 1 cut(s) 179
EcoRII CCWGG 1 cut(s) 73
FaiI YATR 4 cut(s) 89, 186, 188, 199
Fnu4HI GCNGC 1 cut(s) 6
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 2 cut(s) 81, 152
GluI GCNGC 1 cut(s) 6
HaeIII GGCC 1 cut(s) 25
HphI GGTGA 2 cut(s) 80, 106
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 2 cut(s) 21, 108
Hpy8I GTNNAC 1 cut(s) 139
HpyAV CCTTC 2 cut(s) 43, 85
HpyCH4V TGCA 1 cut(s) 8
LpnPI CCDG 3 cut(s) 60, 87, 98
MaeI CTAG 2 cut(s) 81, 152
MaeIII GTNAC 1 cut(s) 179
MboII GAAGA 1 cut(s) 170
MfeI CAATTG 1 cut(s) 57
MluCI AATT 3 cut(s) 37, 57, 145
MnlI CCTC 2 cut(s) 15, 39
MspR9I CCNGG 1 cut(s) 75
MunI CAATTG 1 cut(s) 57
MvaI CCWGG 1 cut(s) 75
NmeAIII GCCGAG 1 cut(s) 69
PkrI GCNGC 1 cut(s) 7
Psp6I CCWGG 1 cut(s) 73
PspEI GGTNACC 1 cut(s) 179
PspGI CCWGG 1 cut(s) 73
PspPI GGNCC 1 cut(s) 24
PstI CTGCAG 1 cut(s) 10
SatI GCNGC 1 cut(s) 6
Sau96I GGNCC 1 cut(s) 24
ScrFI CCNGG 1 cut(s) 75
SetI ASST 2 cut(s) 54, 96
SfcI CTRYAG 1 cut(s) 6
SgeI CNNG 8 cut(s) 33, 57, 86, 87, 93, 125, 154, 164
SpeI ACTAGT 1 cut(s) 80
Sse9I AATT 3 cut(s) 37, 57, 145
SspMI CTAG 2 cut(s) 81, 152
StyD4I CCNGG 1 cut(s) 73
TasI AATT 3 cut(s) 37, 57, 145
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 1 cut(s) 104
XapI RAATTY 2 cut(s) 37, 145
XspI CTAG 2 cut(s) 81, 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.