Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0018215

Physical Location & Seq

Genomic Coordinates Reverse (-)

46524139 .. 46527620

Gene Structure 3482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00199640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCTGAAATTAGATTTACAAAGGTAGAACAAGGCCAAACCAAGATTAGAAATGTTCCGATTGCCGTAACCCCAGAAGGTTTTTGGTGTTGTCCTTCTCCTGTTGCTTTTCAAAAGACCCTTAAGGCTCATAATTCTCTCCACAAACCCAAGTCCTCATCACCACCACCACCTCCACCACCCAAGACAACAGCTCACAGAAAACAAACTATACTGAATGAAAAGAAGCCAACTTTCAGGCCATCTAGATCTGTTTCTGATGGTCAAAGGACTCTTGATCCGGAGGAGCCAGAGGCACCTGCCCTCGGTGCTTCTCTGGTTGCAGAGAGAGTTCCAAGGCCCAAAGTCAAAAATTTGCCAAGGAAGGTGGCAATTGAGTTTGGTGAGCCTGGAACTAGTGATATGAAGGTGATTTTACTTGGGAACCAGGGATTTTGTGTGAAGTTGAGCGTTCACAAGAATGTTCTAGTGGAGAATAGCAACTTTTTCGCTGACAAACTTGCAGAACAACAGTCTAATTCGTCGTGCCTTGAAATTGAAGAGTGCAAGGATATTGAAATATATGTTGAAACTGTTGGGCTTATGTACTACAAAGAAATGAGGCAACAGTTGATGAAGCAACGCGTTTCCCGTGTACTCCGAATTCTGAAGAAACTAAATGGTGGAATGTTGCATAAAGAGTCTTTGGGAGATCGAGCGTGGAGTACAAAGCAATGCAGCAAGCTATATTTTCTTTCATCATGTAAAACTCAACCAGTAAACTTAAATGCTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB

Protein Analysis

258

Amino Acids

28.98

Weight (kDa)

9.59

Isoelectric Point (pI)

59.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018215)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000000833 RLG00000007573 RLG00000022809 RLG00000023057
rosa_multiflora	Rmu_sc0002766.1_g000001 Rmu_sc0006697.1_g000004
rosa_roxburghii	Rroxscaffold_4G00323860 Rroxscaffold_7G00199640
rosa_samantha	Rh1DG140400 Rh5BG556000 Rh7DG373900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	307
Acc36I	ACCTGC	1 cut(s)	307
AccB1I	GGYRCC	1 cut(s)	295
AccII	CGCG	1 cut(s)	624
AccIII	TCCGGA	1 cut(s)	280
AclWI	GGATC	1 cut(s)	272
AcsI	RAATTY	2 cut(s)	352, 642
AcuI	CTGAAG	1 cut(s)	668
AfaI	GTAC	3 cut(s)	587, 636, 706
AfiI	CCNNNNNNNGG	1 cut(s)	305
AflII	CTTAAG	1 cut(s)	122
AflIII	ACRYGT	1 cut(s)	622
AgsI	TTSAA	5 cut(s)	113, 533, 539, 557, 569
AhlI	ACTAGT	1 cut(s)	395
AjnI	CCWGG	2 cut(s)	388, 426
AluBI	AGCT	2 cut(s)	194, 724
AluI	AGCT	2 cut(s)	194, 724
AlwI	GGATC	1 cut(s)	272
Aor13HI	TCCGGA	1 cut(s)	280
AoxI	GGCC	3 cut(s)	34, 239, 338
ApeKI	GCWGC	1 cut(s)	717
ApoI	RAATTY	2 cut(s)	352, 642
AspS9I	GGNCC	1 cut(s)	339
AsuHPI	GGTGA	3 cut(s)	153, 395, 421
BanI	GGYRCC	1 cut(s)	295
BbvI	GCAGC	1 cut(s)	729
BccI	CCATC	2 cut(s)	250, 254
BceAI	ACGGC	1 cut(s)	50
BcgI	CGANNNNNNTGC	2 cut(s)	469, 503
BciT130I	CCWGG	2 cut(s)	390, 428
BcuI	ACTAGT	1 cut(s)	395
BfaI	CTAG	3 cut(s)	246, 396, 467
BfrI	CTTAAG	1 cut(s)	122
BfuAI	ACCTGC	1 cut(s)	307
BglII	AGATCT	1 cut(s)	248
BisI	GCNGC	1 cut(s)	718
BlsI	GCNGC	1 cut(s)	719
Bme1390I	CCNGG	2 cut(s)	390, 428
BmgT120I	GGNCC	1 cut(s)	339
BmiI	GGNNCC	3 cut(s)	288, 297, 425
BmrFI	CCNGG	2 cut(s)	390, 428
BsaJI	CCNNGG	4 cut(s)	304, 335, 359, 427
BsaWI	WCCGGW	1 cut(s)	280
Bsc4I	CCNNNNNNNGG	1 cut(s)	305
Bse1I	ACTGG	1 cut(s)	755
Bse3DI	GCAATG	1 cut(s)	719
BseAI	TCCGGA	1 cut(s)	280
BseBI	CCWGG	2 cut(s)	390, 428
BseDI	CCNNGG	4 cut(s)	304, 335, 359, 427
BseLI	CCNNNNNNNGG	1 cut(s)	305
BseMI	GCAATG	1 cut(s)	719
BseNI	ACTGG	1 cut(s)	755
BseRI	GAGGAG	1 cut(s)	299
BseXI	GCAGC	1 cut(s)	729
Bsh1236I	CGCG	1 cut(s)	624
BshFI	GGCC	3 cut(s)	36, 241, 340
BshNI	GGYRCC	1 cut(s)	295
BsiSI	CCGG	1 cut(s)	281
BslI	CCNNNNNNNGG	1 cut(s)	305
BsnI	GGCC	3 cut(s)	36, 241, 340
Bsp13I	TCCGGA	1 cut(s)	280
Bsp143I	GATC	3 cut(s)	248, 277, 691
BspANI	GGCC	3 cut(s)	36, 241, 340
BspEI	TCCGGA	1 cut(s)	280
BspFNI	CGCG	1 cut(s)	624
BspLI	GGNNCC	3 cut(s)	288, 297, 425
BspMI	ACCTGC	1 cut(s)	307
BspPI	GGATC	1 cut(s)	272
BspT107I	GGYRCC	1 cut(s)	295
BspTI	CTTAAG	1 cut(s)	122
BsrDI	GCAATG	1 cut(s)	719
BsrI	ACTGG	1 cut(s)	755
BssECI	CCNNGG	4 cut(s)	304, 335, 359, 427
BssMI	GATC	3 cut(s)	248, 277, 691
BssT1I	CCWWGG	2 cut(s)	335, 359
Bst2UI	CCWGG	2 cut(s)	390, 428
Bst4CI	ACNGT	3 cut(s)	513, 574, 609
Bst6I	CTCTTC	1 cut(s)	534
BstAFI	CTTAAG	1 cut(s)	122
BstC8I	GCNNGC	1 cut(s)	722
BstFNI	CGCG	1 cut(s)	624
BstKTI	GATC	3 cut(s)	251, 280, 694
BstMBI	GATC	3 cut(s)	248, 277, 691
BstMWI	GCNNNNNNNGC	1 cut(s)	308
BstNI	CCWGG	2 cut(s)	390, 428
BstSCI	CCNGG	2 cut(s)	388, 426
BstUI	CGCG	1 cut(s)	624
BstV1I	GCAGC	1 cut(s)	729
BstX2I	RGATCY	1 cut(s)	248
BstYI	RGATCY	1 cut(s)	248
BsuRI	GGCC	3 cut(s)	36, 241, 340
BveI	ACCTGC	1 cut(s)	307
Cac8I	GCNNGC	1 cut(s)	722
Cfr13I	GGNCC	1 cut(s)	339
Csp6I	GTAC	3 cut(s)	586, 635, 705
CspCI	CAANNNNNGTGG	2 cut(s)	348, 383
CviAII	CATG	1 cut(s)	741
CviQI	GTAC	3 cut(s)	586, 635, 705
DpnI	GATC	3 cut(s)	250, 279, 693
DpnII	GATC	3 cut(s)	248, 277, 691
Eam1104I	CTCTTC	1 cut(s)	534
EarI	CTCTTC	1 cut(s)	534
Eco130I	CCWWGG	2 cut(s)	335, 359
Eco57I	CTGAAG	1 cut(s)	668
EcoRI	GAATTC	1 cut(s)	642
EcoRII	CCWGG	2 cut(s)	388, 426
EcoT14I	CCWWGG	2 cut(s)	335, 359
ErhI	CCWWGG	2 cut(s)	335, 359
FaeI	CATG	1 cut(s)	744
FaiI	YATR	9 cut(s)	132, 212, 404, 562, 564, 584, 675, 727, 742
FatI	CATG	1 cut(s)	740
Fnu4HI	GCNGC	1 cut(s)	718
Fsp4HI	GCNGC	1 cut(s)	718
FspBI	CTAG	3 cut(s)	246, 396, 467
GluI	GCNGC	1 cut(s)	718
HaeIII	GGCC	3 cut(s)	36, 241, 340
HapII	CCGG	1 cut(s)	281
Hin1II	CATG	1 cut(s)	744
HinfI	GANTC	2 cut(s)	271, 680
HpaII	CCGG	1 cut(s)	281
HphI	GGTGA	3 cut(s)	153, 395, 421
Hpy166II	GTNNAC	3 cut(s)	454, 635, 760
Hpy188I	TCNGA	4 cut(s)	60, 259, 641, 648
Hpy188III	TCNNGA	3 cut(s)	246, 275, 281
Hpy8I	GTNNAC	3 cut(s)	454, 635, 760
Hpy99I	CGWCG	1 cut(s)	526
HpyAV	CCTTC	4 cut(s)	71, 105, 358, 400
HpyCH4III	ACNGT	3 cut(s)	513, 574, 609
HpyCH4V	TGCA	5 cut(s)	323, 503, 546, 673, 717
HpyF10VI	GCNNNNNNNGC	1 cut(s)	308
Hsp92II	CATG	1 cut(s)	744
Kpn2I	TCCGGA	1 cut(s)	280
Kzo9I	GATC	3 cut(s)	248, 277, 691
LmnI	GCTCC	1 cut(s)	286
Lsp1109I	GCAGC	1 cut(s)	729
MaeI	CTAG	3 cut(s)	246, 396, 467
MaeIII	GTNAC	1 cut(s)	67
MalI	GATC	3 cut(s)	250, 279, 693
MboI	GATC	3 cut(s)	248, 277, 691
MboII	GAAGA	2 cut(s)	551, 661
MfeI	CAATTG	1 cut(s)	372
MflI	RGATCY	1 cut(s)	248
MluCI	AATT	7 cut(s)	9, 133, 352, 372, 517, 534, 642
MluI	ACGCGT	1 cut(s)	622
MlyI	GAGTC	2 cut(s)	265, 689
MnlI	CCTC	6 cut(s)	166, 183, 277, 286, 314, 594
MroI	TCCGGA	1 cut(s)	280
MseI	TTAA	2 cut(s)	123, 764
MslI	CAYNNNNRTG	1 cut(s)	459
MspCI	CTTAAG	1 cut(s)	122
MspI	CCGG	1 cut(s)	281
MspR9I	CCNGG	2 cut(s)	390, 428
MunI	CAATTG	1 cut(s)	372
MvaI	CCWGG	2 cut(s)	390, 428
MvnI	CGCG	1 cut(s)	624
MwoI	GCNNNNNNNGC	1 cut(s)	308
NdeII	GATC	3 cut(s)	248, 277, 691
NlaIII	CATG	1 cut(s)	744
NlaIV	GGNNCC	3 cut(s)	288, 297, 425
PaqCI	CACCTGC	1 cut(s)	307
PcsI	WCGNNNNNNNCGW	1 cut(s)	628
PkrI	GCNGC	1 cut(s)	719
PleI	GAGTC	2 cut(s)	265, 688
PpsI	GAGTC	2 cut(s)	265, 688
Psp6I	CCWGG	2 cut(s)	388, 426
PspGI	CCWGG	2 cut(s)	388, 426
PspN4I	GGNNCC	3 cut(s)	288, 297, 425
PspPI	GGNCC	1 cut(s)	339
PsuI	RGATCY	1 cut(s)	248
RsaI	GTAC	3 cut(s)	587, 636, 706
RsaNI	GTAC	3 cut(s)	586, 635, 705
RseI	CAYNNNNRTG	1 cut(s)	459
SaqAI	TTAA	2 cut(s)	123, 764
SatI	GCNGC	1 cut(s)	718
Sau3AI	GATC	3 cut(s)	248, 277, 691
Sau96I	GGNCC	1 cut(s)	339
SchI	GAGTC	2 cut(s)	265, 689
ScrFI	CCNGG	2 cut(s)	390, 428
SetI	ASST	8 cut(s)	27, 82, 175, 196, 301, 369, 411, 726
SmiMI	CAYNNNNRTG	1 cut(s)	459
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
SpeI	ACTAGT	1 cut(s)	395
Sse9I	AATT	7 cut(s)	9, 133, 352, 372, 517, 534, 642
SspMI	CTAG	3 cut(s)	246, 396, 467
StyD4I	CCNGG	2 cut(s)	388, 426
StyI	CCWWGG	2 cut(s)	335, 359
TaaI	ACNGT	3 cut(s)	513, 574, 609
TaqI	TCGA	1 cut(s)	694
TasI	AATT	7 cut(s)	9, 133, 352, 372, 517, 534, 642
TatI	WGTACW	3 cut(s)	585, 634, 704
Tru1I	TTAA	2 cut(s)	123, 764
Tru9I	TTAA	2 cut(s)	123, 764
TseI	GCWGC	1 cut(s)	717
TspDTI	ATGAA	4 cut(s)	234, 419, 629, 726
Vha464I	CTTAAG	1 cut(s)	122
XapI	RAATTY	2 cut(s)	352, 642
XbaI	TCTAGA	1 cut(s)	245
XcmI	CCANNNNNNNNNTGG	1 cut(s)	81
XspI	CTAG	3 cut(s)	246, 396, 467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.