Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002766.1

Orthogroup ID

OG0018215

Physical Location & Seq

Genomic Coordinates Reverse (-)

1062 .. 1541

Gene Structure 480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002766.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

atggctgaaattagacttacaaaggtagaacaaggccaaaccaagattagaaatgttccgattgccgtaaccccagaaggtttttggtgttgtccttctcctgttgcgtttcaaaagacccttaaggctcataactctctacacaaacacaagtcctcatcaccaccaccacctccaccacccaagacaacagctcacaaaaaacaaactatactgaatgaaaagaagccaactttcaggccatctagatctgtttctgatggtgaaaggactcttggtccgaaggcgccagaggcacctgccctcggtgcacctttggttgcaaagagagttccgaggcctaaagttgaaaatttgtcgaggaaggtggcaattgagtttggtgaacctagaactagtgatatgaaggtgattttacttgggaagcagggatttttgtgtgaagttgagtgttcacaagaatgttctagtggagaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB

Protein Analysis

159

Amino Acids

17.38

Weight (kDa)

9.71

Isoelectric Point (pI)

69.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018215)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000000833 RLG00000007573 RLG00000022809 RLG00000023057
rosa_multiflora	Rmu_sc0002766.1_g000001 Rmu_sc0006697.1_g000004
rosa_roxburghii	Rroxscaffold_4G00323860 Rroxscaffold_7G00199640
rosa_samantha	Rh1DG140400 Rh5BG556000 Rh7DG373900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	307
Acc36I	ACCTGC	1 cut(s)	307
AccB1I	GGYRCC	2 cut(s)	286, 295
AcsI	RAATTY	1 cut(s)	352
AcyI	GRCGYC	1 cut(s)	287
AfiI	CCNNNNNNNGG	1 cut(s)	305
AflII	CTTAAG	1 cut(s)	122
AgsI	TTSAA	2 cut(s)	113, 350
AhdI	GACNNNNNGTC	1 cut(s)	276
AhlI	ACTAGT	1 cut(s)	395
AjuI	GAANNNNNNNTTGG	2 cut(s)	258, 290
AluBI	AGCT	1 cut(s)	194
AluI	AGCT	1 cut(s)	194
Alw21I	GWGCWC	1 cut(s)	313
Alw44I	GTGCAC	1 cut(s)	309
AoxI	GGCC	3 cut(s)	34, 239, 338
ApaLI	GTGCAC	1 cut(s)	309
ApoI	RAATTY	1 cut(s)	352
AspLEI	GCGC	1 cut(s)	289
AspS9I	GGNCC	1 cut(s)	278
AsuHPI	GGTGA	4 cut(s)	153, 275, 395, 421
AvaII	GGWCC	1 cut(s)	278
BaeGI	GKGCMC	1 cut(s)	313
BanI	GGYRCC	2 cut(s)	286, 295
Bbv12I	GWGCWC	1 cut(s)	313
BccI	CCATC	2 cut(s)	250, 254
BceAI	ACGGC	1 cut(s)	50
BcuI	ACTAGT	1 cut(s)	395
BfaI	CTAG	4 cut(s)	246, 390, 396, 468
BfoI	RGCGCY	1 cut(s)	290
BfrI	CTTAAG	1 cut(s)	122
BfuAI	ACCTGC	1 cut(s)	307
BglII	AGATCT	1 cut(s)	248
Bme18I	GGWCC	1 cut(s)	278
BmeRI	GACNNNNNGTC	1 cut(s)	276
BmgT120I	GGNCC	1 cut(s)	278
BmiI	GGNNCC	2 cut(s)	288, 297
BsaHI	GRCGYC	1 cut(s)	287
BsaJI	CCNNGG	2 cut(s)	304, 335
Bsc4I	CCNNNNNNNGG	1 cut(s)	305
BseDI	CCNNGG	2 cut(s)	304, 335
BseLI	CCNNNNNNNGG	1 cut(s)	305
BseSI	GKGCMC	1 cut(s)	313
BshFI	GGCC	3 cut(s)	36, 241, 340
BshNI	GGYRCC	2 cut(s)	286, 295
BsiHKAI	GWGCWC	1 cut(s)	313
BslI	CCNNNNNNNGG	1 cut(s)	305
BsnI	GGCC	3 cut(s)	36, 241, 340
Bsp1286I	GDGCHC	1 cut(s)	313
Bsp143I	GATC	1 cut(s)	248
BspANI	GGCC	3 cut(s)	36, 241, 340
BspLI	GGNNCC	2 cut(s)	288, 297
BspMI	ACCTGC	1 cut(s)	307
BspT107I	GGYRCC	2 cut(s)	286, 295
BspTI	CTTAAG	1 cut(s)	122
BssECI	CCNNGG	2 cut(s)	304, 335
BssMI	GATC	1 cut(s)	248
BssNI	GRCGYC	1 cut(s)	287
BstACI	GRCGYC	1 cut(s)	287
BstAFI	CTTAAG	1 cut(s)	122
BstH2I	RGCGCY	1 cut(s)	290
BstHHI	GCGC	1 cut(s)	289
BstKTI	GATC	1 cut(s)	251
BstMBI	GATC	1 cut(s)	248
BstMWI	GCNNNNNNNGC	2 cut(s)	293, 308
BstSLI	GKGCMC	1 cut(s)	313
BstX2I	RGATCY	1 cut(s)	248
BstYI	RGATCY	1 cut(s)	248
BsuRI	GGCC	3 cut(s)	36, 241, 340
BveI	ACCTGC	1 cut(s)	307
CfoI	GCGC	1 cut(s)	289
Cfr13I	GGNCC	1 cut(s)	278
CviJI	RGCY	7 cut(s)	5, 36, 128, 194, 229, 241, 340
CviKI_1	RGCY	7 cut(s)	5, 36, 128, 194, 229, 241, 340
DinI	GGCGCC	1 cut(s)	288
DpnI	GATC	1 cut(s)	250
DpnII	GATC	1 cut(s)	248
DriI	GACNNNNNGTC	1 cut(s)	276
Eam1105I	GACNNNNNGTC	1 cut(s)	276
Eco147I	AGGCCT	1 cut(s)	340
Eco47I	GGWCC	1 cut(s)	278
EgeI	GGCGCC	1 cut(s)	288
EheI	GGCGCC	1 cut(s)	288
FaiI	YATR	3 cut(s)	132, 212, 404
FspBI	CTAG	4 cut(s)	246, 390, 396, 468
GlaI	GCGC	1 cut(s)	288
HaeII	RGCGCY	1 cut(s)	290
HaeIII	GGCC	3 cut(s)	36, 241, 340
HhaI	GCGC	1 cut(s)	289
Hin1I	GRCGYC	1 cut(s)	287
Hin6I	GCGC	1 cut(s)	287
HinP1I	GCGC	1 cut(s)	287
HinfI	GANTC	1 cut(s)	271
HphI	GGTGA	4 cut(s)	153, 275, 395, 421
Hpy166II	GTNNAC	3 cut(s)	311, 386, 455
Hpy188I	TCNGA	4 cut(s)	60, 259, 282, 336
Hpy188III	TCNNGA	1 cut(s)	246
Hpy8I	GTNNAC	3 cut(s)	311, 386, 455
HpyAV	CCTTC	5 cut(s)	71, 105, 277, 358, 400
HpyCH4V	TGCA	2 cut(s)	311, 323
HpyF10VI	GCNNNNNNNGC	2 cut(s)	293, 308
Hsp92I	GRCGYC	1 cut(s)	287
HspAI	GCGC	1 cut(s)	287
KasI	GGCGCC	1 cut(s)	286
Kzo9I	GATC	1 cut(s)	248
LpnPI	CCDG	6 cut(s)	87, 114, 223, 303, 312, 413
MaeI	CTAG	4 cut(s)	246, 390, 396, 468
MaeIII	GTNAC	1 cut(s)	67
MalI	GATC	1 cut(s)	250
MboI	GATC	1 cut(s)	248
MfeI	CAATTG	1 cut(s)	372
MflI	RGATCY	1 cut(s)	248
MhlI	GDGCHC	1 cut(s)	313
MluCI	AATT	3 cut(s)	9, 352, 372
Mly113I	GGCGCC	1 cut(s)	287
MlyI	GAGTC	1 cut(s)	265
MnlI	CCTC	6 cut(s)	166, 183, 286, 314, 330, 354
MseI	TTAA	1 cut(s)	123
MslI	CAYNNNNRTG	1 cut(s)	460
MspCI	CTTAAG	1 cut(s)	122
MunI	CAATTG	1 cut(s)	372
MwoI	GCNNNNNNNGC	2 cut(s)	293, 308
NarI	GGCGCC	1 cut(s)	287
NdeII	GATC	1 cut(s)	248
NlaIV	GGNNCC	2 cut(s)	288, 297
PaqCI	CACCTGC	1 cut(s)	307
PceI	AGGCCT	1 cut(s)	340
PleI	GAGTC	1 cut(s)	265
PluTI	GGCGCC	1 cut(s)	290
PpsI	GAGTC	1 cut(s)	265
PspN4I	GGNNCC	2 cut(s)	288, 297
PspPI	GGNCC	1 cut(s)	278
PsuI	RGATCY	1 cut(s)	248
RseI	CAYNNNNRTG	1 cut(s)	460
SaqAI	TTAA	1 cut(s)	123
Sau3AI	GATC	1 cut(s)	248
Sau96I	GGNCC	1 cut(s)	278
SchI	GAGTC	1 cut(s)	265
SduI	GDGCHC	1 cut(s)	313
SetI	ASST	9 cut(s)	27, 82, 175, 196, 301, 316, 369, 391, 411
SfoI	GGCGCC	1 cut(s)	288
SinI	GGWCC	1 cut(s)	278
SmiMI	CAYNNNNRTG	1 cut(s)	460
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
SpeI	ACTAGT	1 cut(s)	395
Sse9I	AATT	3 cut(s)	9, 352, 372
SseBI	AGGCCT	1 cut(s)	340
SspDI	GGCGCC	1 cut(s)	286
SspMI	CTAG	4 cut(s)	246, 390, 396, 468
StuI	AGGCCT	1 cut(s)	340
TaqI	TCGA	1 cut(s)	359
TasI	AATT	3 cut(s)	9, 352, 372
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TspDTI	ATGAA	2 cut(s)	234, 419
Vha464I	CTTAAG	1 cut(s)	122
VneI	GTGCAC	1 cut(s)	309
VpaK11BI	GGWCC	1 cut(s)	278
XapI	RAATTY	1 cut(s)	352
XbaI	TCTAGA	1 cut(s)	245
XcmI	CCANNNNNNNNNTGG	1 cut(s)	81
XspI	CTAG	4 cut(s)	246, 390, 396, 468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.