RLG00000001514

Mitochondrial fission protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0016966
Physical Location & Seq
Forward (+)
16686092 .. 16687454
1363 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001514

Sequence Viewer

Length: 381 bp
ATGAATGAATATACAAATTGCTCTTGGTTTGATTTCAGTATGTCAGATCCAAAGGAGGAGGTTAAATCAAAGACAAGGGATTGGATAAACACTGTGGATGATTCTGCTGCACTTAGGAGTGCTGCTTCTGCCTGGCACGCTGAACTGGCACCGCTCCCGAAGCCGTTGCTTGTAGTCAATATAGGTGGCCCTTCTGACTGCAGTAGTAGTAATGGCAGATTGGGGACCGGTGGTGATAGCGGTGGTGTTGTTTGTGCTGTTAAGTCCAAGGCTACTGTTTCAGCTGCTGGGGAAGAGCAGAGTGGTGGAGTTTGGCAACATGCAAACCAGCGGACTATAGTTGTATTATATGCTCTTAAGAACCTGTGCCTCTGTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mito_fiss_Elm1

Protein Analysis

127

Amino Acids

13.38

Weight (kDa)

5.59

Isoelectric Point (pI)

42.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_fiss_Elm1 PF06258 27 - 67 1.1e-06 Mitochondrial fission ELM1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 148
AccBSI CCGCTC 1 cut(s) 154
AciI CCGC 3 cut(s) 152, 240, 331
AclWI GGATC 1 cut(s) 41
AflII CTTAAG 1 cut(s) 356
AgeI ACCGGT 1 cut(s) 227
AjnI CCWGG 1 cut(s) 131
AluBI AGCT 1 cut(s) 284
AluI AGCT 1 cut(s) 284
AlwI GGATC 1 cut(s) 41
AlwNI CAGNNNCTG 1 cut(s) 287
AoxI GGCC 1 cut(s) 187
ApeKI GCWGC 3 cut(s) 107, 122, 284
AsiGI ACCGGT 1 cut(s) 227
AspS9I GGNCC 2 cut(s) 188, 225
AsuHPI GGTGA 1 cut(s) 245
AvaII GGWCC 1 cut(s) 225
BanI GGYRCC 1 cut(s) 148
BbvI GCAGC 3 cut(s) 94, 109, 271
BceAI ACGGC 1 cut(s) 148
BcgI CGANNNNNNTGC 2 cut(s) 148, 182
BciT130I CCWGG 1 cut(s) 133
BfaI CTAG 1 cut(s) 379
BfmI CTRYAG 2 cut(s) 199, 336
BfrI CTTAAG 1 cut(s) 356
BisI GCNGC 3 cut(s) 108, 123, 285
BlsI GCNGC 3 cut(s) 109, 124, 286
Bme1390I CCNGG 1 cut(s) 133
Bme18I GGWCC 1 cut(s) 225
BmgT120I GGNCC 2 cut(s) 188, 225
BmiI GGNNCC 2 cut(s) 150, 226
BmrFI CCNGG 1 cut(s) 133
BsaJI CCNNGG 1 cut(s) 267
BsaWI WCCGGW 1 cut(s) 227
Bse118I RCCGGY 1 cut(s) 227
Bse1I ACTGG 1 cut(s) 150
BseBI CCWGG 1 cut(s) 133
BseDI CCNNGG 1 cut(s) 267
BseGI GGATG 1 cut(s) 103
BseNI ACTGG 1 cut(s) 150
BseRI GAGGAG 1 cut(s) 71
BseXI GCAGC 3 cut(s) 94, 109, 271
BseYI CCCAGC 1 cut(s) 287
BsgI GTGCAG 1 cut(s) 93
BshFI GGCC 1 cut(s) 189
BshNI GGYRCC 1 cut(s) 148
BshTI ACCGGT 1 cut(s) 227
BsiSI CCGG 1 cut(s) 228
BslFI GGGAC 1 cut(s) 238
BsmFI GGGAC 1 cut(s) 238
BsnI GGCC 1 cut(s) 189
Bsp143I GATC 1 cut(s) 46
BspACI CCGC 3 cut(s) 152, 240, 331
BspANI GGCC 1 cut(s) 189
BspLI GGNNCC 2 cut(s) 150, 226
BspMAI CTGCAG 1 cut(s) 203
BspPI GGATC 1 cut(s) 41
BspQI GCTCTTC 1 cut(s) 288
BspT107I GGYRCC 1 cut(s) 148
BspTI CTTAAG 1 cut(s) 356
BsrBI CCGCTC 1 cut(s) 154
BsrFI RCCGGY 1 cut(s) 227
BsrI ACTGG 1 cut(s) 150
BssAI RCCGGY 1 cut(s) 227
BssECI CCNNGG 1 cut(s) 267
BssMI GATC 1 cut(s) 46
BssT1I CCWWGG 1 cut(s) 267
Bst2UI CCWGG 1 cut(s) 133
Bst4CI ACNGT 2 cut(s) 94, 277
Bst6I CTCTTC 1 cut(s) 288
BstAFI CTTAAG 1 cut(s) 356
BstC8I GCNNGC 1 cut(s) 138
BstDEI CTNAG 1 cut(s) 113
BstF5I GGATG 1 cut(s) 103
BstKTI GATC 1 cut(s) 49
BstMBI GATC 1 cut(s) 46
BstMWI GCNNNNNNNGC 4 cut(s) 128, 137, 146, 160
BstNI CCWGG 1 cut(s) 133
BstNSI RCATGY 1 cut(s) 323
BstSCI CCNGG 1 cut(s) 131
BstSFI CTRYAG 2 cut(s) 199, 336
BstV1I GCAGC 3 cut(s) 94, 109, 271
BstX2I RGATCY 1 cut(s) 46
BstYI RGATCY 1 cut(s) 46
BsuRI GGCC 1 cut(s) 189
BtsCI GGATG 1 cut(s) 103
BtsIMutI CAGTG 1 cut(s) 90
Cac8I GCNNGC 1 cut(s) 138
CaiI CAGNNNCTG 1 cut(s) 287
Cfr10I RCCGGY 1 cut(s) 227
Cfr13I GGNCC 2 cut(s) 188, 225
CspAI ACCGGT 1 cut(s) 227
CspCI CAANNNNNGTGG 2 cut(s) 166, 201
CviAII CATG 1 cut(s) 320
CviJI RGCY 4 cut(s) 163, 189, 272, 284
CviKI_1 RGCY 4 cut(s) 163, 189, 272, 284
DdeI CTNAG 1 cut(s) 113
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
Eam1104I CTCTTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 288
Eco130I CCWWGG 1 cut(s) 267
Eco47I GGWCC 1 cut(s) 225
EcoRII CCWGG 1 cut(s) 131
EcoT14I CCWWGG 1 cut(s) 267
ErhI CCWWGG 1 cut(s) 267
FaeI CATG 1 cut(s) 323
FaiI YATR 7 cut(s) 12, 41, 182, 321, 338, 349, 351
FaqI GGGAC 1 cut(s) 238
FatI CATG 1 cut(s) 319
Fnu4HI GCNGC 3 cut(s) 108, 123, 285
FokI GGATG 1 cut(s) 110
Fsp4HI GCNGC 3 cut(s) 108, 123, 285
FspBI CTAG 1 cut(s) 379
GluI GCNGC 3 cut(s) 108, 123, 285
GsaI CCCAGC 1 cut(s) 291
HaeIII GGCC 1 cut(s) 189
HapII CCGG 1 cut(s) 228
Hin1II CATG 1 cut(s) 323
HinfI GANTC 1 cut(s) 101
HpaII CCGG 1 cut(s) 228
HphI GGTGA 1 cut(s) 245
Hpy188I TCNGA 2 cut(s) 46, 196
Hpy188III TCNNGA 1 cut(s) 157
HpyAV CCTTC 1 cut(s) 201
HpyCH4III ACNGT 2 cut(s) 94, 277
HpyCH4V TGCA 3 cut(s) 110, 201, 323
HpyF10VI GCNNNNNNNGC 4 cut(s) 128, 137, 146, 160
HpyF3I CTNAG 1 cut(s) 113
Hsp92II CATG 1 cut(s) 323
Kzo9I GATC 1 cut(s) 46
LguI GCTCTTC 1 cut(s) 288
LmnI GCTCC 1 cut(s) 159
LpnPI CCDG 7 cut(s) 118, 131, 145, 241, 273, 341, 377
Lsp1109I GCAGC 3 cut(s) 94, 109, 271
MaeI CTAG 1 cut(s) 379
MalI GATC 1 cut(s) 48
MbiI CCGCTC 1 cut(s) 154
MboI GATC 1 cut(s) 46
MboII GAAGA 1 cut(s) 305
MflI RGATCY 1 cut(s) 46
MluCI AATT 1 cut(s) 16
MnlI CCTC 3 cut(s) 49, 52, 380
MseI TTAA 3 cut(s) 63, 261, 357
MspA1I CMGCKG 2 cut(s) 284, 331
MspCI CTTAAG 1 cut(s) 356
MspI CCGG 1 cut(s) 228
MspR9I CCNGG 1 cut(s) 133
MvaI CCWGG 1 cut(s) 133
MwoI GCNNNNNNNGC 4 cut(s) 128, 137, 146, 160
NdeII GATC 1 cut(s) 46
NlaIII CATG 1 cut(s) 323
NlaIV GGNNCC 2 cut(s) 150, 226
NspI RCATGY 1 cut(s) 323
PciSI GCTCTTC 1 cut(s) 288
PfeI GAWTC 1 cut(s) 101
PinAI ACCGGT 1 cut(s) 227
PkrI GCNGC 3 cut(s) 109, 124, 286
Psp6I CCWGG 1 cut(s) 131
PspFI CCCAGC 1 cut(s) 287
PspGI CCWGG 1 cut(s) 131
PspN4I GGNNCC 2 cut(s) 150, 226
PspPI GGNCC 2 cut(s) 188, 225
PstI CTGCAG 1 cut(s) 203
PstNI CAGNNNCTG 1 cut(s) 287
PsuI RGATCY 1 cut(s) 46
PvuII CAGCTG 1 cut(s) 284
SapI GCTCTTC 1 cut(s) 288
SaqAI TTAA 3 cut(s) 63, 261, 357
SatI GCNGC 3 cut(s) 108, 123, 285
Sau3AI GATC 1 cut(s) 46
Sau96I GGNCC 2 cut(s) 188, 225
ScrFI CCNGG 1 cut(s) 133
SetI ASST 4 cut(s) 63, 187, 286, 366
SfcI CTRYAG 2 cut(s) 199, 336
SinI GGWCC 1 cut(s) 225
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
Sse9I AATT 1 cut(s) 16
SsiI CCGC 3 cut(s) 152, 240, 331
SspMI CTAG 1 cut(s) 379
StyD4I CCNGG 1 cut(s) 131
StyI CCWWGG 1 cut(s) 267
TaaI ACNGT 2 cut(s) 94, 277
TasI AATT 1 cut(s) 16
TfiI GAWTC 1 cut(s) 101
Tru1I TTAA 3 cut(s) 63, 261, 357
Tru9I TTAA 3 cut(s) 63, 261, 357
TscAI CASTG 1 cut(s) 97
TseI GCWGC 3 cut(s) 107, 122, 284
TspDTI ATGAA 2 cut(s) 17, 21
TspRI CASTG 1 cut(s) 97
Vha464I CTTAAG 1 cut(s) 356
VpaK11BI GGWCC 1 cut(s) 225
XceI RCATGY 1 cut(s) 323
XspI CTAG 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.