Rh3DG330500

Mitochondrial fission protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0016966
Physical Location & Seq
Forward (+)
36642171 .. 36646412
4242 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG330500.1

Sequence Viewer

Length: 180 bp
ATGGTTACGGATCCAAAGGAGGAGGCTAAATCAGAGACAAGGGATTGGATAAACACTGCGGATGATTCTGCTGCACTTAGGAGTACTGCTTCAGCCTGGCACGCTGAACTGGCACCGCTCCCGAAGCCCTTGCTTGTAGTCAATATAGGAGGCCCTTCTGGTAGAATCCATCTCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mito_fiss_Elm1

Protein Analysis

59

Amino Acids

6.33

Weight (kDa)

5.47

Isoelectric Point (pI)

55.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_fiss_Elm1 PF06258 17 - 58 1.9e-07 Mitochondrial fission ELM1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 112
AccBSI CCGCTC 1 cut(s) 118
AciI CCGC 2 cut(s) 59, 116
AclWI GGATC 2 cut(s) 5, 18
AcuI CTGAAG 1 cut(s) 75
AfaI GTAC 1 cut(s) 85
AjnI CCWGG 1 cut(s) 95
Alw26I GTCTC 1 cut(s) 29
AlwI GGATC 2 cut(s) 5, 18
AoxI GGCC 1 cut(s) 151
ApeKI GCWGC 1 cut(s) 71
AspS9I GGNCC 1 cut(s) 152
BamHI GGATCC 1 cut(s) 10
BanI GGYRCC 1 cut(s) 112
BbvI GCAGC 1 cut(s) 58
BccI CCATC 1 cut(s) 177
BcgI CGANNNNNNTGC 2 cut(s) 112, 146
BciT130I CCWGG 1 cut(s) 97
BcoDI GTCTC 1 cut(s) 29
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
BmcAI AGTACT 1 cut(s) 85
Bme1390I CCNGG 1 cut(s) 97
BmgT120I GGNCC 1 cut(s) 152
BmiI GGNNCC 2 cut(s) 12, 114
BmrFI CCNGG 1 cut(s) 97
Bse1I ACTGG 1 cut(s) 114
BseBI CCWGG 1 cut(s) 97
BseGI GGATG 1 cut(s) 67
BseNI ACTGG 1 cut(s) 114
BseRI GAGGAG 1 cut(s) 35
BseXI GCAGC 1 cut(s) 58
BsgI GTGCAG 1 cut(s) 57
BshFI GGCC 1 cut(s) 153
BshNI GGYRCC 1 cut(s) 112
BsmAI GTCTC 1 cut(s) 29
BsnI GGCC 1 cut(s) 153
Bsp143I GATC 1 cut(s) 10
BspACI CCGC 2 cut(s) 59, 116
BspANI GGCC 1 cut(s) 153
BspLI GGNNCC 2 cut(s) 12, 114
BspPI GGATC 2 cut(s) 5, 18
BspT107I GGYRCC 1 cut(s) 112
BsrBI CCGCTC 1 cut(s) 118
BsrI ACTGG 1 cut(s) 114
BssMI GATC 1 cut(s) 10
Bst2UI CCWGG 1 cut(s) 97
BstC8I GCNNGC 1 cut(s) 102
BstDEI CTNAG 1 cut(s) 77
BstF5I GGATG 1 cut(s) 67
BstKTI GATC 1 cut(s) 13
BstMAI GTCTC 1 cut(s) 29
BstMBI GATC 1 cut(s) 10
BstMWI GCNNNNNNNGC 3 cut(s) 101, 110, 124
BstNI CCWGG 1 cut(s) 97
BstSCI CCNGG 1 cut(s) 95
BstV1I GCAGC 1 cut(s) 58
BstX2I RGATCY 1 cut(s) 10
BstYI RGATCY 1 cut(s) 10
BsuRI GGCC 1 cut(s) 153
BtsCI GGATG 1 cut(s) 67
BtsI GCAGTG 1 cut(s) 54
BtsIMutI CAGTG 1 cut(s) 54
Cac8I GCNNGC 1 cut(s) 102
Cfr13I GGNCC 1 cut(s) 152
Csp6I GTAC 1 cut(s) 84
CviJI RGCY 4 cut(s) 26, 95, 127, 153
CviKI_1 RGCY 4 cut(s) 26, 95, 127, 153
CviQI GTAC 1 cut(s) 84
DdeI CTNAG 1 cut(s) 77
DpnI GATC 1 cut(s) 12
DpnII GATC 1 cut(s) 10
Eco57I CTGAAG 1 cut(s) 75
EcoO109I RGGNCCY 1 cut(s) 152
EcoRII CCWGG 1 cut(s) 95
FaiI YATR 1 cut(s) 146
Fnu4HI GCNGC 1 cut(s) 72
FokI GGATG 1 cut(s) 74
Fsp4HI GCNGC 1 cut(s) 72
GluI GCNGC 1 cut(s) 72
HaeIII GGCC 1 cut(s) 153
HinfI GANTC 2 cut(s) 65, 165
Hpy188I TCNGA 1 cut(s) 34
Hpy188III TCNNGA 1 cut(s) 121
HpyAV CCTTC 1 cut(s) 165
HpyCH4V TGCA 1 cut(s) 74
HpyF10VI GCNNNNNNNGC 3 cut(s) 101, 110, 124
HpyF3I CTNAG 1 cut(s) 77
Kzo9I GATC 1 cut(s) 10
LmnI GCTCC 1 cut(s) 123
LpnPI CCDG 4 cut(s) 82, 95, 109, 144
Lsp1109I GCAGC 1 cut(s) 58
MaeIII GTNAC 1 cut(s) 4
MalI GATC 1 cut(s) 12
MbiI CCGCTC 1 cut(s) 118
MboI GATC 1 cut(s) 10
MflI RGATCY 1 cut(s) 10
MnlI CCTC 3 cut(s) 13, 16, 143
MspR9I CCNGG 1 cut(s) 97
MvaI CCWGG 1 cut(s) 97
MwoI GCNNNNNNNGC 3 cut(s) 101, 110, 124
NdeII GATC 1 cut(s) 10
NlaIV GGNNCC 2 cut(s) 12, 114
PfeI GAWTC 2 cut(s) 65, 165
PkrI GCNGC 1 cut(s) 73
Psp6I CCWGG 1 cut(s) 95
PspGI CCWGG 1 cut(s) 95
PspN4I GGNNCC 2 cut(s) 12, 114
PspPI GGNCC 1 cut(s) 152
PsuI RGATCY 1 cut(s) 10
RsaI GTAC 1 cut(s) 85
RsaNI GTAC 1 cut(s) 84
SatI GCNGC 1 cut(s) 72
Sau3AI GATC 1 cut(s) 10
Sau96I GGNCC 1 cut(s) 152
ScaI AGTACT 1 cut(s) 85
ScrFI CCNGG 1 cut(s) 97
SgeI CNNG 9 cut(s) 51, 108, 109, 113, 122, 133, 142, 146, 171
SsiI CCGC 2 cut(s) 59, 116
StyD4I CCNGG 1 cut(s) 95
TatI WGTACW 1 cut(s) 83
TfiI GAWTC 2 cut(s) 65, 165
TscAI CASTG 1 cut(s) 61
TseI GCWGC 1 cut(s) 71
TspGWI ACGGA 1 cut(s) 23
TspRI CASTG 1 cut(s) 61
ZrmI AGTACT 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.