Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0016966

Physical Location & Seq

Genomic Coordinates Forward (+)

14395932 .. 14407790

Gene Structure 11859 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG161900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGTCAAGAAGTCCTACAAGATCCCAGGTCTTCCCAGATCTGATGCTCCGCCTCCTCCTGCAACTGACTCTCCTGCTCCTACCTCTGTTGCCACTCCCGGTCAACCCCTTGAAGTATCGAGCTCGTGGTCAACTGGTCTTGCTCTTGGAGTCTTGGTTCGATTCAGAAATCTTCAAGCTCAGGATCCAAAGGAGGAGGCTAAATCAGAGACAAGGGATTGGATAAACACTGTGGATGATTCTGCTGCACTTAGGAGTGTTGCTTCTGCCTGGCATGCTGAACTGACACCGCTCCCGAAGCCCTTGCTTGTAGTCAATATAGGAGGCCCTTCTGGAGCTGAAACTCTTGCCTTTTCTCTACTTGATGAAGCAGCTAAAGTAAGGCGGATTTATGATATTGCAAATGTTTCGTCCTCCATGAATCTTATTGAAAAGGAGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_fiss_Elm1

Protein Analysis

147

Amino Acids

15.71

Weight (kDa)

5.67

Isoelectric Point (pI)

58.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_fiss_Elm1	PF06258	71 - 116	8e-06	Mitochondrial fission ELM1
WHD_E2F_TDP	PF02319	117 - 147	3e-06	E2F/DP family winged-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016966)

Species	Orthologous Gene IDs
pyrus_communis	pycom13g19970
rosa_chinensis	RchiOBHm_Chr4g0398401 RchiOBHm_Chr5g0037871
rosa_laevigata	RLG00000000643 RLG00000001514
rosa_multiflora	Rmu_sc0001083.1_g000024 Rmu_sc0005038.1_g000034 Rmu_sc0009210.1_g000003 Rmu_sc0029873.1_g000001
rosa_rugosa	Rorug05G0221000 Rorug05G0260900 Rorug07G0260900
rosa_samantha	Rh3DG330500 Rh7DG161900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	292
AciI	CCGC	3 cut(s)	50, 290, 385
AclWI	GGATC	3 cut(s)	16, 179, 192
AgsI	TTSAA	3 cut(s)	113, 176, 431
AjnI	CCWGG	2 cut(s)	25, 269
AloI	GAACNNNNNNTCC	2 cut(s)	141, 173
AluBI	AGCT	4 cut(s)	123, 179, 338, 374
AluI	AGCT	4 cut(s)	123, 179, 338, 374
Alw21I	GWGCWC	1 cut(s)	125
Alw26I	GTCTC	1 cut(s)	203
AlwI	GGATC	3 cut(s)	16, 179, 192
AoxI	GGCC	1 cut(s)	325
ApeKI	GCWGC	2 cut(s)	245, 371
ArsI	GACNNNNNNTTYG	2 cut(s)	395, 427
AspS9I	GGNCC	1 cut(s)	326
AsuC2I	CCSGG	1 cut(s)	99
BamHI	GGATCC	1 cut(s)	184
BanII	GRGCYC	1 cut(s)	125
BauI	CACGAG	1 cut(s)	124
BbsI	GAAGAC	1 cut(s)	23
Bbv12I	GWGCWC	1 cut(s)	125
BbvI	GCAGC	2 cut(s)	232, 383
BcgI	CGANNNNNNTGC	4 cut(s)	286, 320, 390, 424
BciT130I	CCWGG	2 cut(s)	27, 271
BcnI	CCSGG	1 cut(s)	99
BcoDI	GTCTC	1 cut(s)	203
BglII	AGATCT	1 cut(s)	38
BisI	GCNGC	2 cut(s)	246, 372
BlsI	GCNGC	2 cut(s)	247, 373
Bme1390I	CCNGG	3 cut(s)	27, 99, 271
BmgT120I	GGNCC	1 cut(s)	326
BmiI	GGNNCC	1 cut(s)	186
BmrFI	CCNGG	3 cut(s)	27, 99, 271
BmsI	GCATC	1 cut(s)	34
BpiI	GAAGAC	1 cut(s)	23
BpmI	CTGGAG	1 cut(s)	354
Bpu10I	CCTNAGC	1 cut(s)	180
BpuMI	CCSGG	1 cut(s)	99
BsaJI	CCNNGG	1 cut(s)	25
BsaXI	ACNNNNNCTCC	4 cut(s)	55, 85, 141, 171
Bse1I	ACTGG	1 cut(s)	139
BseBI	CCWGG	2 cut(s)	27, 271
BseDI	CCNNGG	1 cut(s)	25
BseGI	GGATG	1 cut(s)	241
BseMII	CTCAG	1 cut(s)	194
BseNI	ACTGG	1 cut(s)	139
BseRI	GAGGAG	2 cut(s)	45, 209
BseXI	GCAGC	2 cut(s)	232, 383
BsgI	GTGCAG	1 cut(s)	231
BshFI	GGCC	1 cut(s)	327
BsiHKAI	GWGCWC	1 cut(s)	125
BsiSI	CCGG	1 cut(s)	99
BsmAI	GTCTC	1 cut(s)	203
BsnI	GGCC	1 cut(s)	327
Bsp1286I	GDGCHC	1 cut(s)	125
Bsp143I	GATC	3 cut(s)	21, 38, 184
BspACI	CCGC	3 cut(s)	50, 290, 385
BspANI	GGCC	1 cut(s)	327
BspCNI	CTCAG	1 cut(s)	193
BspLI	GGNNCC	1 cut(s)	186
BspPI	GGATC	3 cut(s)	16, 179, 192
BsrBI	CCGCTC	1 cut(s)	292
BsrI	ACTGG	1 cut(s)	139
BssECI	CCNNGG	1 cut(s)	25
BssMI	GATC	3 cut(s)	21, 38, 184
BssSI	CACGAG	1 cut(s)	124
Bst2BI	CACGAG	1 cut(s)	124
Bst2UI	CCWGG	2 cut(s)	27, 271
Bst4CI	ACNGT	1 cut(s)	232
BstC8I	GCNNGC	1 cut(s)	276
BstDEI	CTNAG	2 cut(s)	180, 251
BstF5I	GGATG	1 cut(s)	241
BstKTI	GATC	3 cut(s)	24, 41, 187
BstMAI	GTCTC	1 cut(s)	203
BstMBI	GATC	3 cut(s)	21, 38, 184
BstMWI	GCNNNNNNNGC	2 cut(s)	275, 298
BstNI	CCWGG	2 cut(s)	27, 271
BstNSI	RCATGY	1 cut(s)	278
BstSCI	CCNGG	3 cut(s)	25, 97, 269
BstV1I	GCAGC	2 cut(s)	232, 383
BstV2I	GAAGAC	1 cut(s)	23
BstX2I	RGATCY	3 cut(s)	21, 38, 184
BstYI	RGATCY	3 cut(s)	21, 38, 184
BsuRI	GGCC	1 cut(s)	327
BtsCI	GGATG	1 cut(s)	241
BtsIMutI	CAGTG	1 cut(s)	228
Cac8I	GCNNGC	1 cut(s)	276
Cfr13I	GGNCC	1 cut(s)	326
CviAII	CATG	2 cut(s)	275, 418
CviJI	RGCY	7 cut(s)	123, 179, 200, 301, 327, 338, 374
CviKI_1	RGCY	7 cut(s)	123, 179, 200, 301, 327, 338, 374
DdeI	CTNAG	2 cut(s)	180, 251
DpnI	GATC	3 cut(s)	23, 40, 186
DpnII	GATC	3 cut(s)	21, 38, 184
EciI	GGCGGA	2 cut(s)	39, 400
Ecl136II	GAGCTC	1 cut(s)	123
Eco24I	GRGCYC	1 cut(s)	125
Eco53kI	GAGCTC	1 cut(s)	123
EcoICRI	GAGCTC	1 cut(s)	123
EcoO109I	RGGNCCY	1 cut(s)	326
EcoRII	CCWGG	2 cut(s)	25, 269
EcoT38I	GRGCYC	1 cut(s)	125
FaeI	CATG	2 cut(s)	278, 421
FaiI	YATR	4 cut(s)	276, 320, 393, 419
FatI	CATG	2 cut(s)	274, 417
Fnu4HI	GCNGC	2 cut(s)	246, 372
FokI	GGATG	1 cut(s)	248
FriOI	GRGCYC	1 cut(s)	125
Fsp4HI	GCNGC	2 cut(s)	246, 372
GluI	GCNGC	2 cut(s)	246, 372
GsuI	CTGGAG	1 cut(s)	354
HaeIII	GGCC	1 cut(s)	327
HapII	CCGG	1 cut(s)	99
Hin1II	CATG	2 cut(s)	278, 421
HincII	GTYRAC	2 cut(s)	104, 132
HindII	GTYRAC	2 cut(s)	104, 132
HinfI	GANTC	5 cut(s)	68, 150, 162, 239, 421
HpaII	CCGG	1 cut(s)	99
Hpy166II	GTNNAC	2 cut(s)	104, 132
Hpy188I	TCNGA	3 cut(s)	43, 167, 208
Hpy188III	TCNNGA	4 cut(s)	7, 182, 295, 333
Hpy8I	GTNNAC	2 cut(s)	104, 132
HpyAV	CCTTC	1 cut(s)	339
HpyCH4III	ACNGT	1 cut(s)	232
HpyCH4V	TGCA	3 cut(s)	62, 248, 401
HpyF10VI	GCNNNNNNNGC	2 cut(s)	275, 298
HpyF3I	CTNAG	2 cut(s)	180, 251
Hsp92II	CATG	2 cut(s)	278, 421
Kzo9I	GATC	3 cut(s)	21, 38, 184
LmnI	GCTCC	5 cut(s)	52, 82, 297, 335, 436
Lsp1109I	GCAGC	2 cut(s)	232, 383
LweI	GCATC	1 cut(s)	34
MalI	GATC	3 cut(s)	23, 40, 186
MbiI	CCGCTC	1 cut(s)	292
MboI	GATC	3 cut(s)	21, 38, 184
MboII	GAAGA	2 cut(s)	23, 164
MflI	RGATCY	3 cut(s)	21, 38, 184
MhlI	GDGCHC	1 cut(s)	125
MlyI	GAGTC	2 cut(s)	62, 159
MnlI	CCTC	7 cut(s)	63, 66, 94, 187, 190, 317, 424
MspI	CCGG	1 cut(s)	99
MspR9I	CCNGG	3 cut(s)	27, 99, 271
MvaI	CCWGG	2 cut(s)	27, 271
MwoI	GCNNNNNNNGC	2 cut(s)	275, 298
NciI	CCSGG	1 cut(s)	99
NdeII	GATC	3 cut(s)	21, 38, 184
NlaIII	CATG	2 cut(s)	278, 421
NlaIV	GGNNCC	1 cut(s)	186
NspI	RCATGY	1 cut(s)	278
PaeI	GCATGC	1 cut(s)	278
PfeI	GAWTC	3 cut(s)	162, 239, 421
PkrI	GCNGC	2 cut(s)	247, 373
PleI	GAGTC	2 cut(s)	62, 158
PpsI	GAGTC	2 cut(s)	62, 158
Psp124BI	GAGCTC	1 cut(s)	125
Psp6I	CCWGG	2 cut(s)	25, 269
PspGI	CCWGG	2 cut(s)	25, 269
PspN4I	GGNNCC	1 cut(s)	186
PspPI	GGNCC	1 cut(s)	326
PsuI	RGATCY	3 cut(s)	21, 38, 184
SacI	GAGCTC	1 cut(s)	125
SatI	GCNGC	2 cut(s)	246, 372
Sau3AI	GATC	3 cut(s)	21, 38, 184
Sau96I	GGNCC	1 cut(s)	326
SchI	GAGTC	2 cut(s)	62, 159
ScrFI	CCNGG	3 cut(s)	27, 99, 271
SduI	GDGCHC	1 cut(s)	125
SetI	ASST	6 cut(s)	31, 86, 125, 181, 340, 376
SfaNI	GCATC	1 cut(s)	34
SphI	GCATGC	1 cut(s)	278
SsiI	CCGC	3 cut(s)	50, 290, 385
SstI	GAGCTC	1 cut(s)	125
StyD4I	CCNGG	3 cut(s)	25, 97, 269
TaaI	ACNGT	1 cut(s)	232
TaqI	TCGA	2 cut(s)	119, 160
TfiI	GAWTC	3 cut(s)	162, 239, 421
TscAI	CASTG	1 cut(s)	235
TseI	GCWGC	2 cut(s)	245, 371
TspDTI	ATGAA	2 cut(s)	381, 434
TspRI	CASTG	1 cut(s)	235
XceI	RCATGY	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.