Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009210.1

Orthogroup ID

OG0016966

Physical Location & Seq

Genomic Coordinates Reverse (-)

9739 .. 11941

Gene Structure 2203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009210.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

atgattcttcaacctcgaagcttggtgattcttcaagctcgatttatgggttttggattcagtgattcttcaagcttggtgattcttcaacttcgaagcttgatgattcttcaacctcgaagcttggtgattcttcaagctcgatttatggttgaagtatcgagctcgtggtcaactggtcttgcgtttggagtcttggttcgattcagaaatcttcaagctcaggatccaaaggaggaggctaaatcagagacaagggattggataaacactgtggatgattctgctgcacttaggagtgttgcttctgcctggaacactgaactgacaccgctcccaaagcccttgcttgtagtcaatataggaggcccttatggagctgaaactcttgccttttctctacttgatgaagcagctaaagtaaggcggatttatgatattgcaaatgtttcgtcctccatgaatcttattgataaggtaaaacttatagaacttgtgatagagaaatattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0019867 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_fiss_Elm1

Protein Analysis

170

Amino Acids

18.93

Weight (kDa)

7.99

Isoelectric Point (pI)

65.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016966)

Species	Orthologous Gene IDs
pyrus_communis	pycom13g19970
rosa_chinensis	RchiOBHm_Chr4g0398401 RchiOBHm_Chr5g0037871
rosa_laevigata	RLG00000000643 RLG00000001514
rosa_multiflora	Rmu_sc0001083.1_g000024 Rmu_sc0005038.1_g000034 Rmu_sc0009210.1_g000003 Rmu_sc0029873.1_g000001
rosa_rugosa	Rorug05G0221000 Rorug05G0260900 Rorug07G0260900
rosa_samantha	Rh3DG330500 Rh7DG161900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	334
AciI	CCGC	2 cut(s)	332, 427
AclWI	GGATC	2 cut(s)	221, 234
AgsI	TTSAA	8 cut(s)	11, 35, 72, 89, 113, 137, 155, 218
AjnI	CCWGG	1 cut(s)	311
AloI	GAACNNNNNNTCC	2 cut(s)	183, 215
Alw21I	GWGCWC	1 cut(s)	167
Alw26I	GTCTC	1 cut(s)	245
AlwI	GGATC	2 cut(s)	221, 234
AoxI	GGCC	1 cut(s)	367
ApeKI	GCWGC	2 cut(s)	287, 413
ArsI	GACNNNNNNTTYG	2 cut(s)	437, 469
AspS9I	GGNCC	1 cut(s)	368
AsuHPI	GGTGA	3 cut(s)	37, 91, 139
AsuII	TTCGAA	1 cut(s)	94
BamHI	GGATCC	1 cut(s)	226
BanII	GRGCYC	1 cut(s)	167
BauI	CACGAG	1 cut(s)	166
Bbv12I	GWGCWC	1 cut(s)	167
BbvI	GCAGC	2 cut(s)	274, 425
BcgI	CGANNNNNNTGC	2 cut(s)	432, 466
BciT130I	CCWGG	1 cut(s)	313
BcoDI	GTCTC	1 cut(s)	245
BisI	GCNGC	2 cut(s)	288, 414
BlsI	GCNGC	2 cut(s)	289, 415
Bme1390I	CCNGG	1 cut(s)	313
BmgT120I	GGNCC	1 cut(s)	368
BmiI	GGNNCC	1 cut(s)	228
BmrFI	CCNGG	1 cut(s)	313
Bpu10I	CCTNAGC	1 cut(s)	222
Bpu14I	TTCGAA	1 cut(s)	94
BsaXI	ACNNNNNCTCC	2 cut(s)	183, 213
Bse1I	ACTGG	1 cut(s)	181
BseBI	CCWGG	1 cut(s)	313
BseGI	GGATG	1 cut(s)	283
BseMII	CTCAG	1 cut(s)	236
BseNI	ACTGG	1 cut(s)	181
BseRI	GAGGAG	1 cut(s)	251
BseXI	GCAGC	2 cut(s)	274, 425
BsgI	GTGCAG	1 cut(s)	273
BshFI	GGCC	1 cut(s)	369
BsiHKAI	GWGCWC	1 cut(s)	167
BsmAI	GTCTC	1 cut(s)	245
BsnI	GGCC	1 cut(s)	369
Bsp119I	TTCGAA	1 cut(s)	94
Bsp1286I	GDGCHC	1 cut(s)	167
Bsp143I	GATC	1 cut(s)	226
BspACI	CCGC	2 cut(s)	332, 427
BspANI	GGCC	1 cut(s)	369
BspCNI	CTCAG	1 cut(s)	235
BspLI	GGNNCC	1 cut(s)	228
BspPI	GGATC	2 cut(s)	221, 234
BspT104I	TTCGAA	1 cut(s)	94
BsrBI	CCGCTC	1 cut(s)	334
BsrI	ACTGG	1 cut(s)	181
BssMI	GATC	1 cut(s)	226
BssSI	CACGAG	1 cut(s)	166
Bst2BI	CACGAG	1 cut(s)	166
Bst2UI	CCWGG	1 cut(s)	313
Bst4CI	ACNGT	1 cut(s)	274
BstBI	TTCGAA	1 cut(s)	94
BstDEI	CTNAG	2 cut(s)	222, 293
BstF5I	GGATG	1 cut(s)	283
BstKTI	GATC	1 cut(s)	229
BstMAI	GTCTC	1 cut(s)	245
BstMBI	GATC	1 cut(s)	226
BstMWI	GCNNNNNNNGC	1 cut(s)	340
BstNI	CCWGG	1 cut(s)	313
BstSCI	CCNGG	1 cut(s)	311
BstV1I	GCAGC	2 cut(s)	274, 425
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
BsuRI	GGCC	1 cut(s)	369
BtsCI	GGATG	1 cut(s)	283
BtsIMutI	CAGTG	3 cut(s)	67, 270, 318
Cfr13I	GGNCC	1 cut(s)	368
CviAII	CATG	1 cut(s)	460
DdeI	CTNAG	2 cut(s)	222, 293
DpnI	GATC	1 cut(s)	228
DpnII	GATC	1 cut(s)	226
EciI	GGCGGA	1 cut(s)	442
Ecl136II	GAGCTC	1 cut(s)	165
Eco24I	GRGCYC	1 cut(s)	167
Eco53kI	GAGCTC	1 cut(s)	165
EcoICRI	GAGCTC	1 cut(s)	165
EcoO109I	RGGNCCY	1 cut(s)	368
EcoRII	CCWGG	1 cut(s)	311
EcoT38I	GRGCYC	1 cut(s)	167
FaeI	CATG	1 cut(s)	463
FaiI	YATR	7 cut(s)	47, 149, 362, 375, 435, 461, 488
FatI	CATG	1 cut(s)	459
Fnu4HI	GCNGC	2 cut(s)	288, 414
FokI	GGATG	1 cut(s)	290
FriOI	GRGCYC	1 cut(s)	167
Fsp4HI	GCNGC	2 cut(s)	288, 414
GluI	GCNGC	2 cut(s)	288, 414
HaeIII	GGCC	1 cut(s)	369
Hin1II	CATG	1 cut(s)	463
HincII	GTYRAC	1 cut(s)	174
HindII	GTYRAC	1 cut(s)	174
HindIII	AAGCTT	4 cut(s)	19, 73, 97, 121
HphI	GGTGA	3 cut(s)	37, 91, 139
Hpy166II	GTNNAC	1 cut(s)	174
Hpy188I	TCNGA	2 cut(s)	209, 250
Hpy188III	TCNNGA	1 cut(s)	224
Hpy8I	GTNNAC	1 cut(s)	174
HpyCH4III	ACNGT	1 cut(s)	274
HpyCH4V	TGCA	2 cut(s)	290, 443
HpyF10VI	GCNNNNNNNGC	1 cut(s)	340
HpyF3I	CTNAG	2 cut(s)	222, 293
Hsp92II	CATG	1 cut(s)	463
Kzo9I	GATC	1 cut(s)	226
LmnI	GCTCC	2 cut(s)	339, 377
LpnPI	CCDG	4 cut(s)	162, 209, 298, 325
Lsp1109I	GCAGC	2 cut(s)	274, 425
MalI	GATC	1 cut(s)	228
MbiI	CCGCTC	1 cut(s)	334
MboI	GATC	1 cut(s)	226
MboII	GAAGA	6 cut(s)	23, 60, 77, 101, 125, 206
MflI	RGATCY	1 cut(s)	226
MhlI	GDGCHC	1 cut(s)	167
MlyI	GAGTC	1 cut(s)	201
MnlI	CCTC	6 cut(s)	24, 126, 229, 232, 359, 466
MspR9I	CCNGG	1 cut(s)	313
MvaI	CCWGG	1 cut(s)	313
MwoI	GCNNNNNNNGC	1 cut(s)	340
NdeII	GATC	1 cut(s)	226
NlaIII	CATG	1 cut(s)	463
NlaIV	GGNNCC	1 cut(s)	228
NspV	TTCGAA	1 cut(s)	94
PkrI	GCNGC	2 cut(s)	289, 415
PleI	GAGTC	1 cut(s)	200
PpsI	GAGTC	1 cut(s)	200
Psp124BI	GAGCTC	1 cut(s)	167
Psp6I	CCWGG	1 cut(s)	311
PspGI	CCWGG	1 cut(s)	311
PspN4I	GGNNCC	1 cut(s)	228
PspPI	GGNCC	1 cut(s)	368
PsuI	RGATCY	1 cut(s)	226
SacI	GAGCTC	1 cut(s)	167
SatI	GCNGC	2 cut(s)	288, 414
Sau3AI	GATC	1 cut(s)	226
Sau96I	GGNCC	1 cut(s)	368
SchI	GAGTC	1 cut(s)	201
ScrFI	CCNGG	1 cut(s)	313
SduI	GDGCHC	1 cut(s)	167
SfuI	TTCGAA	1 cut(s)	94
SsiI	CCGC	2 cut(s)	332, 427
SspI	AATATT	1 cut(s)	509
SstI	GAGCTC	1 cut(s)	167
StyD4I	CCNGG	1 cut(s)	311
TaaI	ACNGT	1 cut(s)	274
TaqI	TCGA	7 cut(s)	16, 40, 94, 118, 142, 161, 202
TscAI	CASTG	3 cut(s)	67, 277, 325
TseI	GCWGC	2 cut(s)	287, 413
TspDTI	ATGAA	2 cut(s)	423, 476
TspRI	CASTG	3 cut(s)	67, 277, 325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.