Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001083.1

Orthogroup ID

OG0016966

Physical Location & Seq

Genomic Coordinates Reverse (-)

145888 .. 150912

Gene Structure 5025 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001083.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1461 bp

atgttgaacaagatttatgttaaatgcactattgggtgcgatcatactagcaataatgcaccggatcccatcaaaactttgaaattaagcttatttgggcagagcagtattaggatcactactagaattatgctcatagacatcacggcaattaaatcgattgccctaactattcgactagcacccaacctccctctcgtcctcttcgttctccgcctctggccaaaaccctcttcttcattctctgccttagattaccctaactatttgactagcacccaacctccccctcgtcctcttcgttctgcgcctctgaccaaaaccgtttcttcgttattagcctccaaccaaaacacgaccctcctcgtcctccttcttttccatctcggaccagctcctctgctcgacgatggaatgccgcatctcttctctctctctctctctctttccttctctctcctgcaaaactggtggctctggttatctggacttccagctatccacctctggttatccattttcgctggtgagtcggtgacattgctggtaagtcaaatttctggaattctgggttttagtcttccaatcgaatgtctgactctcacaatctcacaatttccaggtccacaatttcaatcgaaggctataactcttcctcttgctgtgctgctcgacgatggaatgccgcatctcttctctctctctctctctctttccttctctctcctgcaaaactggtggctctggttatctggacttccagctatccacctctggttatccatattcgctggtgagtcggtgacattgctggtaagtcaaatttctggaattctaggttttagtcttccaatggaatgtctgactctcacaatctcacaatttccaggtccacaatttcaatcgaaggctatatgtaaagccgcaaagcagaaattttgggttcgaagcttggtgattcttcaacttcgaagcttgatgattcttcaacctcgaagcttggtgattcttcaagctcgatttatgggttttggattaattgaagtatcgagctcgtggtcaactggtcttgctcttggagtcttggttcgattcagaaatcttcaagctcaggttctcaccattggatctctttatcaggatgattctgctgcacttaggagtgttgcttctgcctggcacgctgaactgacaccgctcccgaagcccttgcttgtagtcaatataggaggcccttctggacgggccttgtcgactccatgtgggtatggggagatgccgggtccctcgatcgtcgtcttgttcgtagttggggagatcgctgtggtggtttgtgcagtgaggaaaagggatcgtagattgtggcggtggtcgagtcttggtttgtccctcgcgggtttgatcggcggaagagattcgtgttactcggtcaaaggttgctggggggtgacgggatcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_fiss_Elm1

Protein Analysis

486

Amino Acids

52.95

Weight (kDa)

9.66

Isoelectric Point (pI)

55.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016966)

Species	Orthologous Gene IDs
pyrus_communis	pycom13g19970
rosa_chinensis	RchiOBHm_Chr4g0398401 RchiOBHm_Chr5g0037871
rosa_laevigata	RLG00000000643 RLG00000001514
rosa_multiflora	Rmu_sc0001083.1_g000024 Rmu_sc0005038.1_g000034 Rmu_sc0009210.1_g000003 Rmu_sc0029873.1_g000001
rosa_rugosa	Rorug05G0221000 Rorug05G0260900 Rorug07G0260900
rosa_samantha	Rh3DG330500 Rh7DG161900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1198
AccI	GTMKAC	1 cut(s)	1253
AccII	CGCG	1 cut(s)	1394
AciI	CCGC	8 cut(s)	214, 419, 686, 924, 1196, 1366, 1394, 1407
AclWI	GGATC	5 cut(s)	59, 72, 122, 1135, 1359
AcoI	YGGCCR	1 cut(s)	221
AcsI	RAATTY	5 cut(s)	555, 564, 822, 831, 935
AgsI	TTSAA	9 cut(s)	7, 82, 635, 902, 965, 989, 1013, 1043, 1106
AjnI	CCWGG	3 cut(s)	619, 886, 1175
AjuI	GAANNNNNNNTTGG	2 cut(s)	217, 249
AloI	GAACNNNNNNTCC	2 cut(s)	1071, 1103
Alw21I	GWGCWC	1 cut(s)	1055
AlwI	GGATC	5 cut(s)	59, 72, 122, 1135, 1359
AoxI	GGCC	3 cut(s)	221, 1231, 1245
ApeKI	GCWGC	2 cut(s)	667, 1151
ApoI	RAATTY	5 cut(s)	555, 564, 822, 831, 935
AseI	ATTAAT	1 cut(s)	1037
Asp700I	GAANNNNTTC	1 cut(s)	1414
AspLEI	GCGC	1 cut(s)	310
AspS9I	GGNCC	6 cut(s)	389, 623, 890, 1232, 1245, 1283
AsuC2I	CCSGG	1 cut(s)	1281
AsuHPI	GGTGA	8 cut(s)	539, 547, 806, 814, 967, 1015, 1111, 1459
AsuII	TTCGAA	2 cut(s)	946, 970
AvaII	GGWCC	4 cut(s)	389, 623, 890, 1283
BalI	TGGCCA	1 cut(s)	223
BamHI	GGATCC	1 cut(s)	64
BanII	GRGCYC	1 cut(s)	1055
BauI	CACGAG	1 cut(s)	1054
BbsI	GAAGAC	2 cut(s)	572, 839
Bbv12I	GWGCWC	1 cut(s)	1055
BbvI	GCAGC	2 cut(s)	654, 1138
BccI	CCATC	4 cut(s)	77, 390, 404, 671
BceAI	ACGGC	1 cut(s)	162
BcgI	CGANNNNNNTGC	4 cut(s)	138, 172, 1192, 1226
BciT130I	CCWGG	3 cut(s)	621, 888, 1177
BcnI	CCSGG	1 cut(s)	1281
BfaI	CTAG	5 cut(s)	48, 123, 179, 273, 836
BisI	GCNGC	5 cut(s)	419, 668, 686, 924, 1152
BlsI	GCNGC	5 cut(s)	420, 669, 687, 925, 1153
Bme1390I	CCNGG	4 cut(s)	621, 888, 1177, 1281
Bme18I	GGWCC	4 cut(s)	389, 623, 890, 1283
BmgT120I	GGNCC	6 cut(s)	389, 623, 890, 1232, 1245, 1283
BmiI	GGNNCC	3 cut(s)	66, 1284, 1285
BmrFI	CCNGG	4 cut(s)	621, 888, 1177, 1281
BmsI	GCATC	3 cut(s)	430, 697, 1266
BpiI	GAAGAC	2 cut(s)	572, 839
Bpu10I	CCTNAGC	1 cut(s)	1110
Bpu14I	TTCGAA	2 cut(s)	946, 970
BpuMI	CCSGG	1 cut(s)	1281
Bsa29I	ATCGAT	1 cut(s)	158
BsaWI	WCCGGW	1 cut(s)	61
BsaXI	ACNNNNNCTCC	6 cut(s)	174, 204, 268, 298, 1071, 1101
Bse1I	ACTGG	3 cut(s)	473, 740, 1069
Bse3DI	GCAATG	2 cut(s)	539, 806
BseBI	CCWGG	3 cut(s)	621, 888, 1177
BseCI	ATCGAT	1 cut(s)	158
BseGI	GGATG	1 cut(s)	1147
BseMI	GCAATG	2 cut(s)	539, 806
BseMII	CTCAG	1 cut(s)	1124
BseNI	ACTGG	3 cut(s)	473, 740, 1069
BseRI	GAGGAG	2 cut(s)	353, 387
BseXI	GCAGC	2 cut(s)	654, 1138
BseYI	CCCAGC	1 cut(s)	1440
BsgI	GTGCAG	2 cut(s)	1137, 1356
Bsh1236I	CGCG	1 cut(s)	1394
Bsh1285I	CGRYCG	1 cut(s)	1293
BshFI	GGCC	3 cut(s)	223, 1233, 1247
BshVI	ATCGAT	1 cut(s)	158
BsiEI	CGRYCG	1 cut(s)	1293
BsiHKAI	GWGCWC	1 cut(s)	1055
BsiSI	CCGG	2 cut(s)	62, 1280
BslFI	GGGAC	2 cut(s)	1269, 1372
BsmFI	GGGAC	2 cut(s)	1269, 1372
BsmI	GAATGC	2 cut(s)	420, 687
BsnI	GGCC	3 cut(s)	223, 1233, 1247
Bsp119I	TTCGAA	2 cut(s)	946, 970
Bsp1286I	GDGCHC	1 cut(s)	1055
Bsp143I	GATC	9 cut(s)	40, 64, 114, 1127, 1290, 1317, 1351, 1401, 1454
BspACI	CCGC	8 cut(s)	214, 419, 686, 924, 1196, 1366, 1394, 1407
BspANI	GGCC	3 cut(s)	223, 1233, 1247
BspCNI	CTCAG	1 cut(s)	1123
BspDI	ATCGAT	1 cut(s)	158
BspFNI	CGCG	1 cut(s)	1394
BspHI	TCATGA	1 cut(s)	1457
BspLI	GGNNCC	3 cut(s)	66, 1284, 1285
BspPI	GGATC	5 cut(s)	59, 72, 122, 1135, 1359
BspT104I	TTCGAA	2 cut(s)	946, 970
BsrBI	CCGCTC	1 cut(s)	1198
BsrDI	GCAATG	2 cut(s)	539, 806
BsrI	ACTGG	3 cut(s)	473, 740, 1069
BssMI	GATC	9 cut(s)	40, 64, 114, 1127, 1290, 1317, 1351, 1401, 1454
BssSI	CACGAG	1 cut(s)	1054
Bst2BI	CACGAG	1 cut(s)	1054
Bst2UI	CCWGG	3 cut(s)	621, 888, 1177
Bst4CI	ACNGT	1 cut(s)	325
Bst6I	CTCTTC	7 cut(s)	209, 238, 303, 431, 657, 698, 1405
BstBI	TTCGAA	2 cut(s)	946, 970
BstC8I	GCNNGC	1 cut(s)	1182
BstDEI	CTNAG	3 cut(s)	250, 1110, 1157
BstF5I	GGATG	1 cut(s)	1147
BstFNI	CGCG	1 cut(s)	1394
BstHHI	GCGC	1 cut(s)	310
BstKTI	GATC	9 cut(s)	43, 67, 117, 1130, 1293, 1320, 1354, 1404, 1457
BstMBI	GATC	9 cut(s)	40, 64, 114, 1127, 1290, 1317, 1351, 1401, 1454
BstMCI	CGRYCG	1 cut(s)	1293
BstMWI	GCNNNNNNNGC	2 cut(s)	1181, 1204
BstNI	CCWGG	3 cut(s)	621, 888, 1177
BstSCI	CCNGG	4 cut(s)	619, 886, 1175, 1279
BstUI	CGCG	1 cut(s)	1394
BstV1I	GCAGC	2 cut(s)	654, 1138
BstV2I	GAAGAC	2 cut(s)	572, 839
BstX2I	RGATCY	2 cut(s)	64, 1127
BstYI	RGATCY	2 cut(s)	64, 1127
Bsu15I	ATCGAT	1 cut(s)	158
BsuRI	GGCC	3 cut(s)	223, 1233, 1247
BsuTUI	ATCGAT	1 cut(s)	158
BtsCI	GGATG	1 cut(s)	1147
BtsI	GCAGTG	1 cut(s)	1344
BtsIMutI	CAGTG	1 cut(s)	1344
Cac8I	GCNNGC	1 cut(s)	1182
CciI	TCATGA	1 cut(s)	1457
CfoI	GCGC	1 cut(s)	310
Cfr13I	GGNCC	6 cut(s)	389, 623, 890, 1232, 1245, 1283
ClaI	ATCGAT	1 cut(s)	158
CspCI	CAANNNNNGTGG	4 cut(s)	452, 487, 719, 754
CviAII	CATG	2 cut(s)	1260, 1458
DdeI	CTNAG	3 cut(s)	250, 1110, 1157
DpnI	GATC	9 cut(s)	42, 66, 116, 1129, 1292, 1319, 1353, 1403, 1456
DpnII	GATC	9 cut(s)	40, 64, 114, 1127, 1290, 1317, 1351, 1401, 1454
EaeI	YGGCCR	1 cut(s)	221
Eam1104I	CTCTTC	7 cut(s)	209, 238, 303, 431, 657, 698, 1405
EarI	CTCTTC	7 cut(s)	209, 238, 303, 431, 657, 698, 1405
EciI	GGCGGA	2 cut(s)	203, 1422
Ecl136II	GAGCTC	1 cut(s)	1053
Eco24I	GRGCYC	1 cut(s)	1055
Eco47I	GGWCC	4 cut(s)	389, 623, 890, 1283
Eco53kI	GAGCTC	1 cut(s)	1053
EcoICRI	GAGCTC	1 cut(s)	1053
EcoO109I	RGGNCCY	2 cut(s)	1232, 1283
EcoRI	GAATTC	2 cut(s)	564, 831
EcoRII	CCWGG	3 cut(s)	619, 886, 1175
EcoT38I	GRGCYC	1 cut(s)	1055
FaeI	CATG	2 cut(s)	1263, 1461
FaqI	GGGAC	2 cut(s)	1269, 1372
FatI	CATG	2 cut(s)	1259, 1457
FauI	CCCGC	1 cut(s)	1387
FblI	GTMKAC	1 cut(s)	1253
Fnu4HI	GCNGC	5 cut(s)	419, 668, 686, 924, 1152
FokI	GGATG	1 cut(s)	1154
FriOI	GRGCYC	1 cut(s)	1055
Fsp4HI	GCNGC	5 cut(s)	419, 668, 686, 924, 1152
FspBI	CTAG	5 cut(s)	48, 123, 179, 273, 836
GlaI	GCGC	1 cut(s)	309
GluI	GCNGC	5 cut(s)	419, 668, 686, 924, 1152
GsaI	CCCAGC	1 cut(s)	1444
HaeIII	GGCC	3 cut(s)	223, 1233, 1247
HapII	CCGG	2 cut(s)	62, 1280
HhaI	GCGC	1 cut(s)	310
Hin1II	CATG	2 cut(s)	1263, 1461
Hin6I	GCGC	1 cut(s)	308
HinP1I	GCGC	1 cut(s)	308
HincII	GTYRAC	2 cut(s)	1062, 1254
HindII	GTYRAC	2 cut(s)	1062, 1254
HindIII	AAGCTT	4 cut(s)	88, 949, 973, 997
HpaII	CCGG	2 cut(s)	62, 1280
HphI	GGTGA	8 cut(s)	539, 547, 806, 814, 967, 1015, 1111, 1459
Hpy166II	GTNNAC	4 cut(s)	626, 893, 1062, 1254
Hpy188I	TCNGA	5 cut(s)	315, 389, 597, 864, 1097
Hpy188III	TCNNGA	8 cut(s)	486, 561, 753, 828, 1139, 1201, 1239, 1458
Hpy8I	GTNNAC	4 cut(s)	626, 893, 1062, 1254
Hpy99I	CGWCG	3 cut(s)	410, 677, 1298
HpyAV	CCTTC	6 cut(s)	383, 460, 634, 727, 901, 1245
HpyCH4III	ACNGT	1 cut(s)	325
HpyCH4V	TGCA	6 cut(s)	27, 59, 463, 730, 1154, 1337
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1181, 1204
HpyF3I	CTNAG	3 cut(s)	250, 1110, 1157
Hsp92II	CATG	2 cut(s)	1263, 1461
HspAI	GCGC	1 cut(s)	308
KflI	GGGWCCC	1 cut(s)	1283
Kzo9I	GATC	9 cut(s)	40, 64, 114, 1127, 1290, 1317, 1351, 1401, 1454
LmnI	GCTCC	2 cut(s)	400, 1203
Lsp1109I	GCAGC	2 cut(s)	654, 1138
LweI	GCATC	3 cut(s)	430, 697, 1266
MaeI	CTAG	5 cut(s)	48, 123, 179, 273, 836
MaeIII	GTNAC	4 cut(s)	535, 802, 1421, 1447
MalI	GATC	9 cut(s)	42, 66, 116, 1129, 1292, 1319, 1353, 1403, 1456
MbiI	CCGCTC	1 cut(s)	1198
MboI	GATC	9 cut(s)	40, 64, 114, 1127, 1290, 1317, 1351, 1401, 1454
MflI	RGATCY	2 cut(s)	64, 1127
MhlI	GDGCHC	1 cut(s)	1055
MlsI	TGGCCA	1 cut(s)	223
MluNI	TGGCCA	1 cut(s)	223
MlyI	GAGTC	7 cut(s)	539, 592, 806, 859, 1089, 1249, 1384
MmeI	TCCRAC	1 cut(s)	369
Mox20I	TGGCCA	1 cut(s)	223
MroXI	GAANNNNTTC	1 cut(s)	1414
MscI	TGGCCA	1 cut(s)	223
MseI	TTAA	4 cut(s)	21, 86, 153, 1037
Msp20I	TGGCCA	1 cut(s)	223
MspI	CCGG	2 cut(s)	62, 1280
MspR9I	CCNGG	4 cut(s)	621, 888, 1177, 1281
Mva1269I	GAATGC	2 cut(s)	420, 687
MvaI	CCWGG	3 cut(s)	621, 888, 1177
MvnI	CGCG	1 cut(s)	1394
MwoI	GCNNNNNNNGC	2 cut(s)	1181, 1204
NciI	CCSGG	1 cut(s)	1281
NdeII	GATC	9 cut(s)	40, 64, 114, 1127, 1290, 1317, 1351, 1401, 1454
NlaIII	CATG	2 cut(s)	1263, 1461
NlaIV	GGNNCC	3 cut(s)	66, 1284, 1285
NmuCI	GTSAC	3 cut(s)	535, 802, 1447
NspV	TTCGAA	2 cut(s)	946, 970
PagI	TCATGA	1 cut(s)	1457
PcsI	WCGNNNNNNNCGW	3 cut(s)	204, 298, 1302
PctI	GAATGC	2 cut(s)	420, 687
PdmI	GAANNNNTTC	1 cut(s)	1414
PfeI	GAWTC	6 cut(s)	958, 982, 1006, 1092, 1145, 1415
PkrI	GCNGC	5 cut(s)	420, 669, 687, 925, 1153
Ple19I	CGATCG	1 cut(s)	1293
PleI	GAGTC	7 cut(s)	538, 592, 805, 859, 1088, 1249, 1383
PpsI	GAGTC	7 cut(s)	538, 592, 805, 859, 1088, 1249, 1383
PpuMI	RGGWCCY	1 cut(s)	1283
PshBI	ATTAAT	1 cut(s)	1037
Psp124BI	GAGCTC	1 cut(s)	1055
Psp5II	RGGWCCY	1 cut(s)	1283
Psp6I	CCWGG	3 cut(s)	619, 886, 1175
PspFI	CCCAGC	1 cut(s)	1440
PspGI	CCWGG	3 cut(s)	619, 886, 1175
PspN4I	GGNNCC	3 cut(s)	66, 1284, 1285
PspPI	GGNCC	6 cut(s)	389, 623, 890, 1232, 1245, 1283
PspPPI	RGGWCCY	1 cut(s)	1283
PsuI	RGATCY	2 cut(s)	64, 1127
PvuI	CGATCG	1 cut(s)	1293
SacI	GAGCTC	1 cut(s)	1055
SalI	GTCGAC	1 cut(s)	1252
SaqAI	TTAA	4 cut(s)	21, 86, 153, 1037
SatI	GCNGC	5 cut(s)	419, 668, 686, 924, 1152
Sau3AI	GATC	9 cut(s)	40, 64, 114, 1127, 1290, 1317, 1351, 1401, 1454
Sau96I	GGNCC	6 cut(s)	389, 623, 890, 1232, 1245, 1283
SchI	GAGTC	7 cut(s)	539, 592, 806, 859, 1089, 1249, 1384
ScrFI	CCNGG	4 cut(s)	621, 888, 1177, 1281
SduI	GDGCHC	1 cut(s)	1055
SfaNI	GCATC	3 cut(s)	430, 697, 1266
SfuI	TTCGAA	2 cut(s)	946, 970
SinI	GGWCC	4 cut(s)	389, 623, 890, 1283
SsiI	CCGC	8 cut(s)	214, 419, 686, 924, 1196, 1366, 1394, 1407
SspMI	CTAG	5 cut(s)	48, 123, 179, 273, 836
SstI	GAGCTC	1 cut(s)	1055
StyD4I	CCNGG	4 cut(s)	619, 886, 1175, 1279
TaaI	ACNGT	1 cut(s)	325
TaqII	GACCGA	1 cut(s)	1417
TauI	GCSGC	3 cut(s)	421, 688, 926
TfiI	GAWTC	6 cut(s)	958, 982, 1006, 1092, 1145, 1415
Tru1I	TTAA	4 cut(s)	21, 86, 153, 1037
Tru9I	TTAA	4 cut(s)	21, 86, 153, 1037
TscAI	CASTG	1 cut(s)	1344
TseFI	GTSAC	3 cut(s)	535, 802, 1447
TseI	GCWGC	2 cut(s)	667, 1151
Tsp45I	GTSAC	3 cut(s)	535, 802, 1447
TspDTI	ATGAA	1 cut(s)	228
TspRI	CASTG	1 cut(s)	1344
VpaK11BI	GGWCC	4 cut(s)	389, 623, 890, 1283
VspI	ATTAAT	1 cut(s)	1037
XapI	RAATTY	5 cut(s)	555, 564, 822, 831, 935
XmiI	GTMKAC	1 cut(s)	1253
XmnI	GAANNNNTTC	1 cut(s)	1414
XspI	CTAG	5 cut(s)	48, 123, 179, 273, 836

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.