Rmu_sc0005038.1_g000034

Mitochondrial fission protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005038.1
OG0016966
Physical Location & Seq
Forward (+)
160123 .. 167027
6905 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005038.1_g000034.1.cds

Sequence Viewer

Length: 435 bp
atgtctcatcttgatcccctaaaagtgacgagatcacatatacctgctgcaaacatgcctgcaaggattgatgtccccacaagaggacatgttgaagtatcgagctcgtggtcaactggtcttgctcttggagtcttggttcgattcagaaatcttcaagctcaggatccaaaggaggaggctaaatcagagacatgggattggataatcactgcggatgattctgctgcacttaggagtactgcttcagcctggcacgctgaactggcaccgctcccgaagcccttgcttgtagtcaatataggaggcccttctggtctttcaacctgtcttttggtgagcaatgttacaagcaaggaggataatggaccggattttgatccggacccgctccagatccgtgactattggacgggtttggatcgaacattttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mito_fiss_Elm1

Protein Analysis

144

Amino Acids

15.73

Weight (kDa)

5.23

Isoelectric Point (pI)

47.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 52
AccB1I GGYRCC 1 cut(s) 268
AccBSI CCGCTC 2 cut(s) 274, 391
AccIII TCCGGA 1 cut(s) 382
AciI CCGC 3 cut(s) 215, 272, 389
AclWI GGATC 6 cut(s) 8, 161, 174, 374, 391, 429
AcuI CTGAAG 1 cut(s) 231
AfaI GTAC 1 cut(s) 241
AfiI CCNNNNNNNGG 1 cut(s) 83
AflIII ACRYGT 1 cut(s) 88
AgsI TTSAA 3 cut(s) 95, 158, 324
AjnI CCWGG 1 cut(s) 251
AloI GAACNNNNNNTCC 2 cut(s) 123, 155
AluBI AGCT 2 cut(s) 105, 161
AluI AGCT 2 cut(s) 105, 161
Alw21I GWGCWC 1 cut(s) 107
Alw26I GTCTC 2 cut(s) 9, 185
AlwI GGATC 6 cut(s) 8, 161, 174, 374, 391, 429
Aor13HI TCCGGA 1 cut(s) 382
AoxI GGCC 1 cut(s) 307
ApeKI GCWGC 2 cut(s) 47, 227
AspS9I GGNCC 3 cut(s) 308, 368, 385
AsuHPI GGTGA 1 cut(s) 349
AvaII GGWCC 2 cut(s) 368, 385
BamHI GGATCC 1 cut(s) 166
BanI GGYRCC 1 cut(s) 268
BanII GRGCYC 1 cut(s) 107
BauI CACGAG 1 cut(s) 106
Bbv12I GWGCWC 1 cut(s) 107
BbvI GCAGC 2 cut(s) 34, 214
BcgI CGANNNNNNTGC 2 cut(s) 268, 302
BciT130I CCWGG 1 cut(s) 253
BcoDI GTCTC 2 cut(s) 9, 185
BfuAI ACCTGC 1 cut(s) 52
BisI GCNGC 2 cut(s) 48, 228
BlsI GCNGC 2 cut(s) 49, 229
BmcAI AGTACT 1 cut(s) 241
Bme1390I CCNGG 1 cut(s) 253
Bme18I GGWCC 2 cut(s) 368, 385
BmgT120I GGNCC 3 cut(s) 308, 368, 385
BmiI GGNNCC 3 cut(s) 168, 270, 387
BmrFI CCNGG 1 cut(s) 253
BpmI CTGGAG 1 cut(s) 377
Bpu10I CCTNAGC 1 cut(s) 162
BsaBI GATNNNNATC 1 cut(s) 378
BsaWI WCCGGW 2 cut(s) 370, 382
BsaXI ACNNNNNCTCC 2 cut(s) 123, 153
Bsc4I CCNNNNNNNGG 1 cut(s) 83
Bse1I ACTGG 2 cut(s) 121, 270
Bse3DI GCAATG 1 cut(s) 349
Bse8I GATNNNNATC 1 cut(s) 378
BseAI TCCGGA 1 cut(s) 382
BseBI CCWGG 1 cut(s) 253
BseGI GGATG 1 cut(s) 223
BseJI GATNNNNATC 1 cut(s) 378
BseLI CCNNNNNNNGG 1 cut(s) 83
BseMI GCAATG 1 cut(s) 349
BseMII CTCAG 1 cut(s) 176
BseNI ACTGG 2 cut(s) 121, 270
BseRI GAGGAG 1 cut(s) 191
BseXI GCAGC 2 cut(s) 34, 214
BsgI GTGCAG 1 cut(s) 213
BshFI GGCC 1 cut(s) 309
BshNI GGYRCC 1 cut(s) 268
BsiHKAI GWGCWC 1 cut(s) 107
BsiSI CCGG 2 cut(s) 371, 383
BslFI GGGAC 1 cut(s) 59
BslI CCNNNNNNNGG 1 cut(s) 83
BsmAI GTCTC 2 cut(s) 9, 185
BsmFI GGGAC 1 cut(s) 59
BsnI GGCC 1 cut(s) 309
Bsp1286I GDGCHC 1 cut(s) 107
Bsp13I TCCGGA 1 cut(s) 382
Bsp143I GATC 6 cut(s) 13, 32, 166, 379, 396, 421
BspACI CCGC 3 cut(s) 215, 272, 389
BspANI GGCC 1 cut(s) 309
BspCNI CTCAG 1 cut(s) 175
BspEI TCCGGA 1 cut(s) 382
BspLI GGNNCC 3 cut(s) 168, 270, 387
BspMI ACCTGC 1 cut(s) 52
BspPI GGATC 6 cut(s) 8, 161, 174, 374, 391, 429
BspT107I GGYRCC 1 cut(s) 268
BsrBI CCGCTC 2 cut(s) 274, 391
BsrDI GCAATG 1 cut(s) 349
BsrI ACTGG 2 cut(s) 121, 270
BssMI GATC 6 cut(s) 13, 32, 166, 379, 396, 421
BssSI CACGAG 1 cut(s) 106
Bst2BI CACGAG 1 cut(s) 106
Bst2UI CCWGG 1 cut(s) 253
BstC8I GCNNGC 2 cut(s) 60, 258
BstDEI CTNAG 2 cut(s) 162, 233
BstF5I GGATG 1 cut(s) 223
BstKTI GATC 6 cut(s) 16, 35, 169, 382, 399, 424
BstMAI GTCTC 2 cut(s) 9, 185
BstMBI GATC 6 cut(s) 13, 32, 166, 379, 396, 421
BstMWI GCNNNNNNNGC 3 cut(s) 257, 266, 280
BstNI CCWGG 1 cut(s) 253
BstNSI RCATGY 2 cut(s) 58, 92
BstSCI CCNGG 1 cut(s) 251
BstV1I GCAGC 2 cut(s) 34, 214
BstX2I RGATCY 2 cut(s) 166, 396
BstYI RGATCY 2 cut(s) 166, 396
BsuRI GGCC 1 cut(s) 309
BtsCI GGATG 1 cut(s) 223
BtsI GCAGTG 1 cut(s) 210
BtsIMutI CAGTG 1 cut(s) 210
BveI ACCTGC 1 cut(s) 52
Cac8I GCNNGC 2 cut(s) 60, 258
Cfr13I GGNCC 3 cut(s) 308, 368, 385
Csp6I GTAC 1 cut(s) 240
CviAII CATG 3 cut(s) 55, 89, 195
CviJI RGCY 6 cut(s) 105, 161, 182, 251, 283, 309
CviKI_1 RGCY 6 cut(s) 105, 161, 182, 251, 283, 309
CviQI GTAC 1 cut(s) 240
DdeI CTNAG 2 cut(s) 162, 233
DpnI GATC 6 cut(s) 15, 34, 168, 381, 398, 423
DpnII GATC 6 cut(s) 13, 32, 166, 379, 396, 421
Ecl136II GAGCTC 1 cut(s) 105
Eco24I GRGCYC 1 cut(s) 107
Eco47I GGWCC 2 cut(s) 368, 385
Eco53kI GAGCTC 1 cut(s) 105
Eco57I CTGAAG 1 cut(s) 231
EcoICRI GAGCTC 1 cut(s) 105
EcoO109I RGGNCCY 1 cut(s) 308
EcoRII CCWGG 1 cut(s) 251
EcoT38I GRGCYC 1 cut(s) 107
FaeI CATG 3 cut(s) 58, 92, 198
FaiI YATR 6 cut(s) 39, 41, 56, 90, 196, 302
FaqI GGGAC 1 cut(s) 59
FatI CATG 3 cut(s) 54, 88, 194
FauI CCCGC 1 cut(s) 396
Fnu4HI GCNGC 2 cut(s) 48, 228
FokI GGATG 1 cut(s) 230
FriOI GRGCYC 1 cut(s) 107
Fsp4HI GCNGC 2 cut(s) 48, 228
GluI GCNGC 2 cut(s) 48, 228
GsuI CTGGAG 1 cut(s) 377
HaeIII GGCC 1 cut(s) 309
HapII CCGG 2 cut(s) 371, 383
Hin1II CATG 3 cut(s) 58, 92, 198
HincII GTYRAC 1 cut(s) 114
HindII GTYRAC 1 cut(s) 114
HinfI GANTC 3 cut(s) 132, 144, 221
HpaII CCGG 2 cut(s) 371, 383
HphI GGTGA 1 cut(s) 349
Hpy166II GTNNAC 1 cut(s) 114
Hpy188I TCNGA 2 cut(s) 149, 190
Hpy188III TCNNGA 5 cut(s) 11, 164, 277, 383, 394
Hpy8I GTNNAC 1 cut(s) 114
HpyAV CCTTC 1 cut(s) 321
HpyCH4V TGCA 3 cut(s) 50, 62, 230
HpyF10VI GCNNNNNNNGC 3 cut(s) 257, 266, 280
HpyF3I CTNAG 2 cut(s) 162, 233
Hsp92II CATG 3 cut(s) 58, 92, 198
Kpn2I TCCGGA 1 cut(s) 382
Kzo9I GATC 6 cut(s) 13, 32, 166, 379, 396, 421
LmnI GCTCC 2 cut(s) 279, 396
Lsp1109I GCAGC 2 cut(s) 34, 214
MaeIII GTNAC 3 cut(s) 25, 346, 401
MalI GATC 6 cut(s) 15, 34, 168, 381, 398, 423
MbiI CCGCTC 2 cut(s) 274, 391
MboI GATC 6 cut(s) 13, 32, 166, 379, 396, 421
MboII GAAGA 1 cut(s) 146
MflI RGATCY 2 cut(s) 166, 396
MhlI GDGCHC 1 cut(s) 107
MlyI GAGTC 1 cut(s) 141
MnlI CCTC 5 cut(s) 77, 169, 172, 299, 352
MroI TCCGGA 1 cut(s) 382
MspI CCGG 2 cut(s) 371, 383
MspR9I CCNGG 1 cut(s) 253
MvaI CCWGG 1 cut(s) 253
MwoI GCNNNNNNNGC 3 cut(s) 257, 266, 280
NdeII GATC 6 cut(s) 13, 32, 166, 379, 396, 421
NlaIII CATG 3 cut(s) 58, 92, 198
NlaIV GGNNCC 3 cut(s) 168, 270, 387
NmuCI GTSAC 2 cut(s) 25, 401
NspI RCATGY 2 cut(s) 58, 92
PciI ACATGT 1 cut(s) 88
PfeI GAWTC 2 cut(s) 144, 221
PkrI GCNGC 2 cut(s) 49, 229
PleI GAGTC 1 cut(s) 140
PpsI GAGTC 1 cut(s) 140
PscI ACATGT 1 cut(s) 88
Psp124BI GAGCTC 1 cut(s) 107
Psp6I CCWGG 1 cut(s) 251
PspGI CCWGG 1 cut(s) 251
PspN4I GGNNCC 3 cut(s) 168, 270, 387
PspPI GGNCC 3 cut(s) 308, 368, 385
PsuI RGATCY 2 cut(s) 166, 396
RsaI GTAC 1 cut(s) 241
RsaNI GTAC 1 cut(s) 240
SacI GAGCTC 1 cut(s) 107
SatI GCNGC 2 cut(s) 48, 228
Sau3AI GATC 6 cut(s) 13, 32, 166, 379, 396, 421
Sau96I GGNCC 3 cut(s) 308, 368, 385
ScaI AGTACT 1 cut(s) 241
SchI GAGTC 1 cut(s) 141
ScrFI CCNGG 1 cut(s) 253
SduI GDGCHC 1 cut(s) 107
SetI ASST 4 cut(s) 46, 107, 163, 329
SinI GGWCC 2 cut(s) 368, 385
SsiI CCGC 3 cut(s) 215, 272, 389
SstI GAGCTC 1 cut(s) 107
StyD4I CCNGG 1 cut(s) 251
TaqI TCGA 3 cut(s) 101, 142, 424
TatI WGTACW 1 cut(s) 239
TfiI GAWTC 2 cut(s) 144, 221
TscAI CASTG 1 cut(s) 217
TseFI GTSAC 2 cut(s) 25, 401
TseI GCWGC 2 cut(s) 47, 227
Tsp45I GTSAC 2 cut(s) 25, 401
TspGWI ACGGA 1 cut(s) 389
TspRI CASTG 1 cut(s) 217
VpaK11BI GGWCC 2 cut(s) 368, 385
XceI RCATGY 2 cut(s) 58, 92
ZrmI AGTACT 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.