RLG00000002139

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0017363
Physical Location & Seq
Forward (+)
26135305 .. 26137767
2463 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002139

Sequence Viewer

Length: 735 bp
ATGGTCCAGCGTGGCCTCGAACCCAATGCCAGCTATCTTGGCGCCAACATGGTTGCAATGTGCTCCAGCTCTGCTCATCTCCTTACTCACCTAGTTTATGGTCAGGTGCATTTTTATGGCCTTAAGGGTGATCATTTTACCTACCCTTTTGTGGAAATGTGTTGTGCAGAGTTGTCGAATATTTATATGGGGAAATGTTTTCATGGGCTGAGTACGTTGAGAACTGGGTTGGAGTCTGATATGAATACGAGGAGATTGGAGTCATCGGTGGAGGAGTCACTAGCGAATTCTACGGTGTTGGACAATAGTGCATTTTTCCCACTGCAACAGACTCACACTCTTGATCCTCAAGAGGTAATCATTAATAGTAATGATGTGGCACTAGCAGGAGGGATTCAATCAAGTGGGCCTGCGGCCATAGCTGGGGGTACAGGGGATGTTGTGGCTAATAACATGGACCCGACTATTCGAAAGGGTGAACTGGGTGCTCAGACTCTGGGTCTTGCTGATGTTAGTGTGGAGGGGGGTCGTATCAAGGCCGGATCGGCCCCAACTGAATTCCAACCTAAGGCCAAAAAGAACGGTGGGGGTATGAAGGGTTTCCTAGTGGGAGGTGGTAAGAAGAAAGGGAGAGCGGTTGTTATGAAGTTGCCTACATATCCTAATGCAAGTAGTGGACGTACTCAGAATTGTCCTTCCGTGATGGGCCCGGATTTGGTCCATCACGAGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

245

Amino Acids

25.72

Weight (kDa)

6.7

Isoelectric Point (pI)

32.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017363)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18340
malus_domestica MD07G1165900.v1.1
prunus_persica Prupe.2G205400_v2.0.a1
pyrus_communis pycom07g16150
rosa_chinensis RchiOBHm_Chr1g0362051
rosa_laevigata RLG00000002139 RLG00000027677
rosa_multiflora Rmu_sc0010614.1_g000005 Rmu_sc0020775.1_g000001
rosa_roxburghii Rroxscaffold_4G00294570
rosa_rugosa Rorug01G0293100
rosa_samantha Rh1BG266600
rosa_wichuraiana Rw1G027010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 41
AccBSI CCGCTC 1 cut(s) 635
AciI CCGC 2 cut(s) 413, 635
AclWI GGATC 2 cut(s) 338, 550
AcoI YGGCCR 1 cut(s) 414
AcsI RAATTY 2 cut(s) 286, 557
AcyI GRCGYC 1 cut(s) 42
AfaI GTAC 3 cut(s) 214, 430, 682
AfiI CCNNNNNNNGG 4 cut(s) 151, 423, 568, 715
AflII CTTAAG 1 cut(s) 122
AgsI TTSAA 1 cut(s) 398
AhdI GACNNNNNGTC 1 cut(s) 498
AluBI AGCT 3 cut(s) 33, 69, 422
AluI AGCT 3 cut(s) 33, 69, 422
Alw21I GWGCWC 2 cut(s) 65, 490
AlwI GGATC 2 cut(s) 338, 550
AlwNI CAGNNNCTG 1 cut(s) 496
AoxI GGCC 8 cut(s) 13, 118, 407, 414, 537, 546, 570, 706
ApaI GGGCCC 1 cut(s) 710
ApoI RAATTY 2 cut(s) 286, 557
AseI ATTAAT 1 cut(s) 363
Asp700I GAANNNNTTC 1 cut(s) 599
AspLEI GCGC 1 cut(s) 44
AspS9I GGNCC 7 cut(s) 4, 407, 457, 547, 706, 707, 718
AsuC2I CCSGG 1 cut(s) 710
AsuHPI GGTGA 3 cut(s) 80, 140, 488
AsuII TTCGAA 1 cut(s) 469
AvaII GGWCC 3 cut(s) 4, 457, 718
AxyI CCTNAGG 1 cut(s) 567
BaeGI GKGCMC 1 cut(s) 710
BanI GGYRCC 1 cut(s) 41
BanII GRGCYC 1 cut(s) 710
BauI CACGAG 1 cut(s) 725
Bbv12I GWGCWC 2 cut(s) 65, 490
BccI CCATC 2 cut(s) 697, 729
BcgI CGANNNNNNTGC 4 cut(s) 8, 42, 156, 190
BclI TGATCA 1 cut(s) 130
BcnI CCSGG 1 cut(s) 710
BfaI CTAG 4 cut(s) 92, 281, 383, 605
BfoI RGCGCY 1 cut(s) 45
BfrI CTTAAG 1 cut(s) 122
BglI GCCNNNNNGGC 1 cut(s) 545
BisI GCNGC 1 cut(s) 414
BlsI GCNGC 1 cut(s) 415
Bme1390I CCNGG 1 cut(s) 710
Bme18I GGWCC 3 cut(s) 4, 457, 718
BmeRI GACNNNNNGTC 1 cut(s) 498
BmgT120I GGNCC 7 cut(s) 4, 407, 457, 547, 706, 707, 718
BmiI GGNNCC 4 cut(s) 43, 459, 549, 708
BmrFI CCNGG 1 cut(s) 710
BmrI ACTGGG 2 cut(s) 234, 491
BmuI ACTGGG 2 cut(s) 234, 491
BpmI CTGGAG 1 cut(s) 49
Bpu14I TTCGAA 1 cut(s) 469
BpuEI CTTGAG 1 cut(s) 333
BpuMI CCSGG 1 cut(s) 710
BsaHI GRCGYC 1 cut(s) 42
Bsc4I CCNNNNNNNGG 4 cut(s) 151, 423, 568, 715
Bse1I ACTGG 2 cut(s) 229, 486
Bse21I CCTNAGG 1 cut(s) 567
Bse3DI GCAATG 1 cut(s) 63
BseGI GGATG 1 cut(s) 442
BseLI CCNNNNNNNGG 4 cut(s) 151, 423, 568, 715
BseMI GCAATG 1 cut(s) 63
BseMII CTCAG 3 cut(s) 200, 503, 698
BseNI ACTGG 2 cut(s) 229, 486
BseRI GAGGAG 2 cut(s) 265, 287
BseSI GKGCMC 1 cut(s) 710
BseYI CCCAGC 1 cut(s) 422
BsgI GTGCAG 1 cut(s) 186
BshFI GGCC 8 cut(s) 15, 120, 409, 416, 539, 548, 572, 708
BshNI GGYRCC 1 cut(s) 41
BsiHKAI GWGCWC 2 cut(s) 65, 490
BsiSI CCGG 2 cut(s) 540, 710
BslI CCNNNNNNNGG 4 cut(s) 151, 423, 568, 715
BsnI GGCC 8 cut(s) 15, 120, 409, 416, 539, 548, 572, 708
Bsp119I TTCGAA 1 cut(s) 469
Bsp120I GGGCCC 1 cut(s) 706
Bsp1286I GDGCHC 3 cut(s) 65, 490, 710
Bsp143I GATC 3 cut(s) 130, 343, 542
BspACI CCGC 2 cut(s) 413, 635
BspANI GGCC 8 cut(s) 15, 120, 409, 416, 539, 548, 572, 708
BspCNI CTCAG 3 cut(s) 201, 502, 697
BspHI TCATGA 1 cut(s) 731
BspLI GGNNCC 4 cut(s) 43, 459, 549, 708
BspPI GGATC 2 cut(s) 338, 550
BspT104I TTCGAA 1 cut(s) 469
BspT107I GGYRCC 1 cut(s) 41
BspTI CTTAAG 1 cut(s) 122
BsrBI CCGCTC 1 cut(s) 635
BsrDI GCAATG 1 cut(s) 63
BsrI ACTGG 2 cut(s) 229, 486
BssMI GATC 3 cut(s) 130, 343, 542
BssNI GRCGYC 1 cut(s) 42
BssSI CACGAG 1 cut(s) 725
Bst2BI CACGAG 1 cut(s) 725
Bst4CI ACNGT 2 cut(s) 295, 584
BstACI GRCGYC 1 cut(s) 42
BstAFI CTTAAG 1 cut(s) 122
BstBI TTCGAA 1 cut(s) 469
BstC8I GCNNGC 2 cut(s) 31, 411
BstDEI CTNAG 4 cut(s) 209, 489, 567, 684
BstF5I GGATG 1 cut(s) 442
BstH2I RGCGCY 1 cut(s) 45
BstHHI GCGC 1 cut(s) 44
BstKTI GATC 3 cut(s) 133, 346, 545
BstMBI GATC 3 cut(s) 130, 343, 542
BstMWI GCNNNNNNNGC 3 cut(s) 39, 419, 545
BstSCI CCNGG 1 cut(s) 708
BstSLI GKGCMC 1 cut(s) 710
Bsu36I CCTNAGG 1 cut(s) 567
BsuRI GGCC 8 cut(s) 15, 120, 409, 416, 539, 548, 572, 708
BtsCI GGATG 1 cut(s) 442
BtsI GCAGTG 1 cut(s) 320
BtsIMutI CAGTG 1 cut(s) 320
Cac8I GCNNGC 2 cut(s) 31, 411
CaiI CAGNNNCTG 1 cut(s) 496
CciI TCATGA 1 cut(s) 731
CfoI GCGC 1 cut(s) 44
Cfr13I GGNCC 7 cut(s) 4, 407, 457, 547, 706, 707, 718
Csp6I GTAC 3 cut(s) 213, 429, 681
CviAII CATG 4 cut(s) 49, 203, 454, 732
CviQI GTAC 3 cut(s) 213, 429, 681
DdeI CTNAG 4 cut(s) 209, 489, 567, 684
DinI GGCGCC 1 cut(s) 43
DpnI GATC 3 cut(s) 132, 345, 544
DpnII GATC 3 cut(s) 130, 343, 542
DriI GACNNNNNGTC 1 cut(s) 498
EaeI YGGCCR 1 cut(s) 414
Eam1105I GACNNNNNGTC 1 cut(s) 498
Eco24I GRGCYC 1 cut(s) 710
Eco47I GGWCC 3 cut(s) 4, 457, 718
Eco81I CCTNAGG 1 cut(s) 567
EcoRI GAATTC 2 cut(s) 286, 557
EcoT38I GRGCYC 1 cut(s) 710
EgeI GGCGCC 1 cut(s) 43
EheI GGCGCC 1 cut(s) 43
FaeI CATG 4 cut(s) 52, 206, 457, 735
FatI CATG 4 cut(s) 48, 202, 453, 731
FbaI TGATCA 1 cut(s) 130
Fnu4HI GCNGC 1 cut(s) 414
FokI GGATG 1 cut(s) 449
FriOI GRGCYC 1 cut(s) 710
Fsp4HI GCNGC 1 cut(s) 414
FspBI CTAG 4 cut(s) 92, 281, 383, 605
GlaI GCGC 1 cut(s) 43
GluI GCNGC 1 cut(s) 414
GsaI CCCAGC 1 cut(s) 426
GsuI CTGGAG 1 cut(s) 49
HaeII RGCGCY 1 cut(s) 45
HaeIII GGCC 8 cut(s) 15, 120, 409, 416, 539, 548, 572, 708
HapII CCGG 2 cut(s) 540, 710
HhaI GCGC 1 cut(s) 44
Hin1I GRCGYC 1 cut(s) 42
Hin1II CATG 4 cut(s) 52, 206, 457, 735
Hin6I GCGC 1 cut(s) 42
HinP1I GCGC 1 cut(s) 42
HinfI GANTC 7 cut(s) 233, 260, 275, 331, 394, 493, 728
HpaII CCGG 2 cut(s) 540, 710
HphI GGTGA 3 cut(s) 80, 140, 488
Hpy166II GTNNAC 2 cut(s) 479, 677
Hpy188I TCNGA 3 cut(s) 238, 492, 687
Hpy188III TCNNGA 4 cut(s) 341, 350, 725, 732
Hpy8I GTNNAC 2 cut(s) 479, 677
HpyAV CCTTC 2 cut(s) 589, 705
HpyCH4III ACNGT 2 cut(s) 295, 584
HpyCH4IV ACGT 2 cut(s) 215, 679
HpyCH4V TGCA 6 cut(s) 56, 109, 167, 311, 325, 668
HpyF10VI GCNNNNNNNGC 3 cut(s) 39, 419, 545
HpyF3I CTNAG 4 cut(s) 209, 489, 567, 684
HpySE526I ACGT 2 cut(s) 215, 679
Hsp92I GRCGYC 1 cut(s) 42
Hsp92II CATG 4 cut(s) 52, 206, 457, 735
HspAI GCGC 1 cut(s) 42
KasI GGCGCC 1 cut(s) 41
Ksp22I TGATCA 1 cut(s) 130
Kzo9I GATC 3 cut(s) 130, 343, 542
LmnI GCTCC 1 cut(s) 68
MaeI CTAG 4 cut(s) 92, 281, 383, 605
MaeII ACGT 2 cut(s) 215, 679
MaeIII GTNAC 1 cut(s) 276
MalI GATC 3 cut(s) 132, 345, 544
MbiI CCGCTC 1 cut(s) 635
MboI GATC 3 cut(s) 130, 343, 542
MboII GAAGA 1 cut(s) 634
MhlI GDGCHC 3 cut(s) 65, 490, 710
MluCI AATT 3 cut(s) 286, 557, 688
Mly113I GGCGCC 1 cut(s) 42
MlyI GAGTC 5 cut(s) 242, 269, 284, 325, 487
MmeI TCCRAC 3 cut(s) 210, 279, 586
MnlI CCTC 8 cut(s) 26, 243, 265, 346, 357, 383, 514, 605
MroXI GAANNNNTTC 1 cut(s) 599
MseI TTAA 2 cut(s) 123, 363
MslI CAYNNNNRTG 1 cut(s) 114
MspCI CTTAAG 1 cut(s) 122
MspI CCGG 2 cut(s) 540, 710
MspR9I CCNGG 1 cut(s) 710
MwoI GCNNNNNNNGC 3 cut(s) 39, 419, 545
NarI GGCGCC 1 cut(s) 42
NciI CCSGG 1 cut(s) 710
NdeII GATC 3 cut(s) 130, 343, 542
NlaIII CATG 4 cut(s) 52, 206, 457, 735
NlaIV GGNNCC 4 cut(s) 43, 459, 549, 708
NmuCI GTSAC 1 cut(s) 276
NspV TTCGAA 1 cut(s) 469
PagI TCATGA 1 cut(s) 731
PdmI GAANNNNTTC 1 cut(s) 599
PfeI GAWTC 1 cut(s) 394
PkrI GCNGC 1 cut(s) 415
PleI GAGTC 5 cut(s) 241, 268, 283, 325, 487
PluTI GGCGCC 1 cut(s) 45
PpsI GAGTC 5 cut(s) 241, 268, 283, 325, 487
PshBI ATTAAT 1 cut(s) 363
PspFI CCCAGC 1 cut(s) 422
PspN4I GGNNCC 4 cut(s) 43, 459, 549, 708
PspOMI GGGCCC 1 cut(s) 706
PspPI GGNCC 7 cut(s) 4, 407, 457, 547, 706, 707, 718
PstNI CAGNNNCTG 1 cut(s) 496
RsaI GTAC 3 cut(s) 214, 430, 682
RsaNI GTAC 3 cut(s) 213, 429, 681
RseI CAYNNNNRTG 1 cut(s) 114
SaqAI TTAA 2 cut(s) 123, 363
SatI GCNGC 1 cut(s) 414
Sau3AI GATC 3 cut(s) 130, 343, 542
Sau96I GGNCC 7 cut(s) 4, 407, 457, 547, 706, 707, 718
SchI GAGTC 5 cut(s) 242, 269, 284, 325, 487
ScrFI CCNGG 1 cut(s) 710
SduI GDGCHC 3 cut(s) 65, 490, 710
SfiI GGCCNNNNNGGCC 1 cut(s) 545
SfoI GGCGCC 1 cut(s) 43
SfuI TTCGAA 1 cut(s) 469
SinI GGWCC 3 cut(s) 4, 457, 718
SmiMI CAYNNNNRTG 1 cut(s) 114
SmlI CTYRAG 2 cut(s) 122, 348
SmoI CTYRAG 2 cut(s) 122, 348
Sse9I AATT 3 cut(s) 286, 557, 688
SsiI CCGC 2 cut(s) 413, 635
SspDI GGCGCC 1 cut(s) 41
SspI AATATT 1 cut(s) 181
SspMI CTAG 4 cut(s) 92, 281, 383, 605
StyD4I CCNGG 1 cut(s) 708
TaaI ACNGT 2 cut(s) 295, 584
TaiI ACGT 2 cut(s) 218, 682
TaqI TCGA 3 cut(s) 18, 176, 469
TasI AATT 3 cut(s) 286, 557, 688
TauI GCSGC 1 cut(s) 416
TfiI GAWTC 1 cut(s) 394
Tru1I TTAA 2 cut(s) 123, 363
Tru9I TTAA 2 cut(s) 123, 363
TscAI CASTG 1 cut(s) 327
TseFI GTSAC 1 cut(s) 276
Tsp45I GTSAC 1 cut(s) 276
TspDTI ATGAA 4 cut(s) 191, 257, 608, 659
TspGWI ACGGA 1 cut(s) 688
TspRI CASTG 1 cut(s) 327
Vha464I CTTAAG 1 cut(s) 122
VpaK11BI GGWCC 3 cut(s) 4, 457, 718
VspI ATTAAT 1 cut(s) 363
XapI RAATTY 2 cut(s) 286, 557
XmnI GAANNNNTTC 1 cut(s) 599
XspI CTAG 4 cut(s) 92, 281, 383, 605
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.