Rh1BG266600

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0017363
Physical Location & Seq
Reverse (-)
40029562 .. 40031439
1878 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG266600.1

Sequence Viewer

Length: 1878 bp
ATGCGTACTCTGTTAAAGCCACTACTAGCACAAAACCCATGTTTCATCTTAGACTATGCACCAATTTTCCAATCCTTAACTGGGCAAAACTTGTTGAAGCTAGGCCAACAGGTCCACACCCATATGGTCCTGCGTGGCCTCGAACCCAATGCCTATCTTGGCGCCAAAATGGTTGCAATGTACGCCAGCTCTGGTGATCTTCACTCAGCTGTAAATGTGTTTCATAGAGTGAAGTACCCATCTCCACTTTTGTATAATTCGATTATTCGGGCTTATACTCTTCATGGTTACTCTGCGAGAACTATGGAAATTTATGGTCAGATGCATTGTTTAGGCCTAAAGGGTGATCATTTTACCTACCCTTTTGTGCTCAAGTGTTGTGCAGAGTTGTCGAATATTTGGATAGGGAAATGTGTTCATGGGCTGAGCTTCAGAACTGGGTTGGAGTCTGATATGTATGTTGGGACTTCTTTGATTGACATGTATGTGAAATGTTGTGAGATGGGGAGTGCACGTAAGCTGTTCGATGAAATGTCTGTGAGAGACGTTTCGTCGTGGAATGCGTTGATTGCGGGGTACATGAGAGAGGGTGAGATTTGTTCTGCTGAGGAGTTGTTTGGACAAATGAGGTGCAAGAATATTGTGTCTTGGACTGCTATGATATCGGGGTATGCGCAGAATGGGCTGGCTGAGCAGGCATTGAGTGTGTTCGATGAGATGTTGAAGAATGATTCGGAGGTTAAGCCGAATTGGGTGACGGTAATGAGTGTTCTTCCTGCATGTGCACATTCGGCGGCACTAGAGCGGGGGAGGAAGATTCACAAGTTTGCTAGCGGGATTGGTTTGGACTCGAATGCTTCCATACAGACCGCGCTGGTAGCAATGTATGCTAAATGTGGGAGCCTTTCTGATGCTCGTCAGTGTTTTGATAGGATTCGTGGAAGTGAGAAGAATTTGGTTGTATGGAATACTATGATCACTGCTTATGCGTCCCATGCCCGCGGATCAGAAGCTGTGTCCACTTTTGAGGACATGGTGAGAGCCGGTGTTCAACCTGATCATATAACATTCACGGGATTGTTATCTGGATGCAGTCATTCAGGACTTGTTGATGTTGGCTTGAAATACTTCGATGGCATGGAGACAATATACTCTGTTGAACCAAGAGTTGAACATTATGCTTGTGTTGTTGATCTATTGGGTCGTGCAGGGCGATTGATGGAAGCAATGGATGTCGTAGATAAAATGCCAATGCAAGCAGGGCCAAGCATTTGGGGTGCACTGTTATCAGCTTGTCGAAACCACCCAAACTTGGAAATTGCCGAAACTGCAGCCAGAAATCTCTTCATTTTGGAACCAGACAACAGTGGCAACTATGTCCTGCTATCTAATATATATGCTGAAGCTAGCATGTGGAAGGAGGTGGACAAATTGAGAATTCTATTAAAATCTCAAGGGATGAAGAAGAGCCCTGGAGGCAGTTGGATAGAAGTCAATGGGAAAGCCCATCTGTTTCTTGGTGGAGATACATCTCACTCTCAAGCAAAGGAAATTTACATGTTACTGGAGGAGTTACCGAAAAGGATGAAGGCAGCTGGTTATGTACCTGACACTAGGTTTGCTTTGCATGATGTTAGTGAAGAGGAGAAAGAACATAACCTTACAACCCACAGTGAAAAGCTTGCCATTGCCTTTGGACTTCTTAATACTGATCCTGGAGCAGTTCTTCGTGTGACAAAGAACCTTAGAATTTGTGGAGATTGTCATACAGCCACCAAGTTCATATCTAGAATCTATGGGAGGGAGATTATCATAAGAGACGTGAATCGATTCCATCACTTTAAAGATGGGGACTGTTCATGTGGAGATTATTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

625

Amino Acids

69.42

Weight (kDa)

6.76

Isoelectric Point (pI)

35.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 181 - 214 4.2e-06 PPR repeat family
PPR_2 PF13041 212 - 262 5e-10 PPR repeat family
PPR PF01535 215 - 243 3e-09 PPR repeat
PPR_2 PF13041 318 - 365 1.8e-13 PPR repeat family
PPR PF01535 320 - 350 5.8e-06 PPR repeat
E_motif PF20431 435 - 497 6.1e-24 E motif
DYW_deaminase PF14432 533 - 625 3.9e-45 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017363)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18340
malus_domestica MD07G1165900.v1.1
prunus_persica Prupe.2G205400_v2.0.a1
pyrus_communis pycom07g16150
rosa_chinensis RchiOBHm_Chr1g0362051
rosa_laevigata RLG00000002139 RLG00000027677
rosa_multiflora Rmu_sc0010614.1_g000005 Rmu_sc0020775.1_g000001
rosa_roxburghii Rroxscaffold_4G00294570
rosa_rugosa Rorug01G0293100
rosa_samantha Rh1BG266600
rosa_wichuraiana Rw1G027010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 675
AccB1I GGYRCC 1 cut(s) 161
AccBSI CCGCTC 1 cut(s) 805
AccII CGCG 2 cut(s) 872, 1002
AciI CCGC 7 cut(s) 572, 794, 805, 834, 870, 1000, 1002
AclWI GGATC 2 cut(s) 1012, 1706
AcsI RAATTY 5 cut(s) 309, 952, 1437, 1551, 1749
AcuI CTGAAG 2 cut(s) 415, 1422
AcyI GRCGYC 1 cut(s) 162
AfaI GTAC 5 cut(s) 7, 182, 236, 578, 1605
AfiI CCNNNNNNNGG 2 cut(s) 81, 1312
AflIII ACRYGT 2 cut(s) 480, 1557
AgsI TTSAA 6 cut(s) 97, 724, 1052, 1123, 1160, 1172
AhdI GACNNNNNGTC 1 cut(s) 550
AjiI CACGTC 1 cut(s) 1822
AjnI CCWGG 2 cut(s) 1471, 1714
Alw21I GWGCWC 4 cut(s) 372, 514, 787, 1282
Alw26I GTCTC 3 cut(s) 537, 1136, 1812
Alw44I GTGCAC 3 cut(s) 510, 783, 1278
AlwI GGATC 2 cut(s) 1012, 1706
AlwNI CAGNNNCTG 1 cut(s) 1013
AoxI GGCC 4 cut(s) 103, 136, 334, 1262
ApaLI GTGCAC 3 cut(s) 510, 783, 1278
ApeKI GCWGC 2 cut(s) 1331, 1592
ApoI RAATTY 5 cut(s) 309, 952, 1437, 1551, 1749
ArsI GACNNNNNNTTYG 2 cut(s) 1601, 1633
Asp700I GAANNNNTTC 2 cut(s) 1127, 1829
AspLEI GCGC 3 cut(s) 164, 676, 874
AspS9I GGNCC 3 cut(s) 112, 127, 1262
AsuHPI GGTGA 5 cut(s) 206, 356, 602, 766, 1048
AsuNHI GCTAGC 2 cut(s) 830, 1406
AvaII GGWCC 2 cut(s) 112, 127
BaeGI GKGCMC 3 cut(s) 514, 787, 1282
BanI GGYRCC 1 cut(s) 161
BanII GRGCYC 1 cut(s) 1472
Bbv12I GWGCWC 4 cut(s) 372, 514, 787, 1282
BbvCI CCTCAGC 1 cut(s) 606
BbvI GCAGC 2 cut(s) 1343, 1604
BccI CCATC 7 cut(s) 247, 496, 1127, 1213, 1515, 1841, 1842
BcgI CGANNNNNNTGC 4 cut(s) 131, 165, 372, 406
BciT130I CCWGG 2 cut(s) 1473, 1716
BclI TGATCA 3 cut(s) 346, 975, 1057
BcoDI GTCTC 3 cut(s) 537, 1136, 1812
BfaI CTAG 7 cut(s) 26, 101, 800, 831, 1407, 1614, 1788
BfmI CTRYAG 1 cut(s) 1329
BfoI RGCGCY 1 cut(s) 165
BglI GCCNNNNNGGC 1 cut(s) 1476
BisI GCNGC 3 cut(s) 795, 1332, 1593
BlpI GCTNAGC 2 cut(s) 425, 690
BlsI GCNGC 3 cut(s) 796, 1333, 1594
Bme1390I CCNGG 2 cut(s) 1473, 1716
Bme18I GGWCC 2 cut(s) 112, 127
BmeRI GACNNNNNGTC 1 cut(s) 550
BmgBI CACGTC 1 cut(s) 1822
BmgT120I GGNCC 3 cut(s) 112, 127, 1262
BmiI GGNNCC 3 cut(s) 163, 902, 1356
BmrFI CCNGG 2 cut(s) 1473, 1716
BmrI ACTGGG 2 cut(s) 90, 447
BmsI GCATC 3 cut(s) 312, 901, 1079
BmtI GCTAGC 2 cut(s) 834, 1410
BmuI ACTGGG 2 cut(s) 90, 447
BpmI CTGGAG 3 cut(s) 1494, 1586, 1737
Bpu10I CCTNAGC 1 cut(s) 606
Bpu1102I GCTNAGC 2 cut(s) 425, 690
BpuEI CTTGAG 3 cut(s) 356, 1437, 1524
Bsa29I ATCGAT 1 cut(s) 1828
BsaAI YACGTR 1 cut(s) 515
BsaBI GATNNNNATC 1 cut(s) 1081
BsaHI GRCGYC 1 cut(s) 162
BsaJI CCNNGG 2 cut(s) 1000, 1471
BsaXI ACNNNNNCTCC 2 cut(s) 499, 529
Bsc4I CCNNNNNNNGG 2 cut(s) 81, 1312
Bse118I RCCGGY 1 cut(s) 1043
Bse1I ACTGG 3 cut(s) 85, 442, 1569
Bse3DI GCAATG 4 cut(s) 183, 888, 1233, 1686
Bse8I GATNNNNATC 1 cut(s) 1081
BseBI CCWGG 2 cut(s) 1473, 1716
BseCI ATCGAT 1 cut(s) 1828
BseDI CCNNGG 2 cut(s) 1000, 1471
BseGI GGATG 4 cut(s) 1094, 1237, 1464, 1590
BseJI GATNNNNATC 1 cut(s) 1081
BseLI CCNNNNNNNGG 2 cut(s) 81, 1312
BseMI GCAATG 4 cut(s) 183, 888, 1233, 1686
BseMII CTCAG 4 cut(s) 219, 416, 597, 681
BseNI ACTGG 3 cut(s) 85, 442, 1569
BseRI GAGGAG 3 cut(s) 623, 1583, 1658
BseSI GKGCMC 3 cut(s) 514, 787, 1282
BseXI GCAGC 2 cut(s) 1343, 1604
BsgI GTGCAG 2 cut(s) 402, 1227
Bsh1236I CGCG 2 cut(s) 872, 1002
BshFI GGCC 4 cut(s) 105, 138, 336, 1264
BshNI GGYRCC 1 cut(s) 161
BshVI ATCGAT 1 cut(s) 1828
BsiHKAI GWGCWC 4 cut(s) 372, 514, 787, 1282
BsiSI CCGG 1 cut(s) 1044
BslFI GGGAC 3 cut(s) 478, 976, 1865
BslI CCNNNNNNNGG 2 cut(s) 81, 1312
BsmAI GTCTC 3 cut(s) 537, 1136, 1812
BsmBI CGTCTC 2 cut(s) 537, 1812
BsmFI GGGAC 3 cut(s) 478, 976, 1865
BsmI GAATGC 2 cut(s) 565, 859
BsnI GGCC 4 cut(s) 105, 138, 336, 1264
Bsp1286I GDGCHC 5 cut(s) 372, 514, 787, 1282, 1472
Bsp143I GATC 7 cut(s) 196, 346, 975, 1004, 1057, 1192, 1711
Bsp1720I GCTNAGC 2 cut(s) 425, 690
BspACI CCGC 7 cut(s) 572, 794, 805, 834, 870, 1000, 1002
BspANI GGCC 4 cut(s) 105, 138, 336, 1264
BspCNI CTCAG 4 cut(s) 218, 417, 598, 682
BspDI ATCGAT 1 cut(s) 1828
BspFNI CGCG 2 cut(s) 872, 1002
BspLI GGNNCC 3 cut(s) 163, 902, 1356
BspMAI CTGCAG 1 cut(s) 1333
BspOI GCTAGC 2 cut(s) 834, 1410
BspPI GGATC 2 cut(s) 1012, 1706
BspQI GCTCTTC 1 cut(s) 1460
BspT107I GGYRCC 1 cut(s) 161
BsrBI CCGCTC 1 cut(s) 805
BsrDI GCAATG 4 cut(s) 183, 888, 1233, 1686
BsrFI RCCGGY 1 cut(s) 1043
BsrI ACTGG 3 cut(s) 85, 442, 1569
BssAI RCCGGY 1 cut(s) 1043
BssECI CCNNGG 2 cut(s) 1000, 1471
BssMI GATC 7 cut(s) 196, 346, 975, 1004, 1057, 1192, 1711
BssNI GRCGYC 1 cut(s) 162
Bst2UI CCWGG 2 cut(s) 1473, 1716
Bst4CI ACNGT 5 cut(s) 760, 1284, 1367, 1673, 1856
Bst6I CTCTTC 4 cut(s) 285, 1349, 1460, 1635
BstACI GRCGYC 1 cut(s) 162
BstAPI GCANNNNNTGC 1 cut(s) 887
BstBAI YACGTR 1 cut(s) 515
BstC8I GCNNGC 8 cut(s) 187, 687, 696, 832, 1000, 1257, 1408, 1683
BstDEI CTNAG 6 cut(s) 49, 205, 425, 606, 690, 1745
BstDSI CCRYGG 1 cut(s) 1000
BstF5I GGATG 4 cut(s) 1094, 1237, 1464, 1590
BstFNI CGCG 2 cut(s) 872, 1002
BstH2I RGCGCY 1 cut(s) 165
BstHHI GCGC 3 cut(s) 164, 676, 874
BstKTI GATC 7 cut(s) 199, 349, 978, 1007, 1060, 1195, 1714
BstMAI GTCTC 3 cut(s) 537, 1136, 1812
BstMBI GATC 7 cut(s) 196, 346, 975, 1004, 1057, 1192, 1711
BstNI CCWGG 2 cut(s) 1473, 1716
BstNSI RCATGY 4 cut(s) 484, 783, 1414, 1561
BstSCI CCNGG 2 cut(s) 1471, 1714
BstSFI CTRYAG 1 cut(s) 1329
BstSLI GKGCMC 3 cut(s) 514, 787, 1282
BstUI CGCG 2 cut(s) 872, 1002
BstV1I GCAGC 2 cut(s) 1343, 1604
BstXI CCANNNNNNTGG 1 cut(s) 1272
Bsu15I ATCGAT 1 cut(s) 1828
BsuRI GGCC 4 cut(s) 105, 138, 336, 1264
BsuTUI ATCGAT 1 cut(s) 1828
BtgI CCRYGG 1 cut(s) 1000
BtrI CACGTC 1 cut(s) 1822
BtsCI GGATG 4 cut(s) 1094, 1237, 1464, 1590
BtsI GCAGTG 1 cut(s) 978
BtsIMutI CAGTG 5 cut(s) 926, 978, 1280, 1372, 1678
Cac8I GCNNGC 8 cut(s) 187, 687, 696, 832, 1000, 1257, 1408, 1683
CaiI CAGNNNCTG 1 cut(s) 1013
CfoI GCGC 3 cut(s) 164, 676, 874
Cfr10I RCCGGY 1 cut(s) 1043
Cfr13I GGNCC 3 cut(s) 112, 127, 1262
Cfr42I CCGCGG 1 cut(s) 1003
ClaI ATCGAT 1 cut(s) 1828
CseI GACGC 1 cut(s) 978
Csp6I GTAC 5 cut(s) 6, 181, 235, 577, 1604
CviQI GTAC 5 cut(s) 6, 181, 235, 577, 1604
DdeI CTNAG 6 cut(s) 49, 205, 425, 606, 690, 1745
DinI GGCGCC 1 cut(s) 163
DpnI GATC 7 cut(s) 198, 348, 977, 1006, 1059, 1194, 1713
DpnII GATC 7 cut(s) 196, 346, 975, 1004, 1057, 1192, 1711
DraI TTTAAA 1 cut(s) 1843
DriI GACNNNNNGTC 1 cut(s) 550
Eam1104I CTCTTC 4 cut(s) 285, 1349, 1460, 1635
Eam1105I GACNNNNNGTC 1 cut(s) 550
EarI CTCTTC 4 cut(s) 285, 1349, 1460, 1635
Eco147I AGGCCT 1 cut(s) 336
Eco24I GRGCYC 1 cut(s) 1472
Eco32I GATATC 1 cut(s) 663
Eco47I GGWCC 2 cut(s) 112, 127
Eco57I CTGAAG 2 cut(s) 415, 1422
EcoRI GAATTC 1 cut(s) 1437
EcoRII CCWGG 2 cut(s) 1471, 1714
EcoRV GATATC 1 cut(s) 663
EcoT22I ATGCAT 1 cut(s) 327
EcoT38I GRGCYC 1 cut(s) 1472
EgeI GGCGCC 1 cut(s) 163
EheI GGCGCC 1 cut(s) 163
Esp3I CGTCTC 2 cut(s) 537, 1812
FaqI GGGAC 3 cut(s) 478, 976, 1865
FauI CCCGC 4 cut(s) 565, 798, 827, 1007
FauNDI CATATG 1 cut(s) 123
FbaI TGATCA 3 cut(s) 346, 975, 1057
Fnu4HI GCNGC 3 cut(s) 795, 1332, 1593
FokI GGATG 4 cut(s) 1101, 1244, 1471, 1597
FriOI GRGCYC 1 cut(s) 1472
Fsp4HI GCNGC 3 cut(s) 795, 1332, 1593
FspBI CTAG 7 cut(s) 26, 101, 800, 831, 1407, 1614, 1788
FspI TGCGCA 1 cut(s) 675
GlaI GCGC 3 cut(s) 163, 675, 873
GluI GCNGC 3 cut(s) 795, 1332, 1593
GsuI CTGGAG 3 cut(s) 1494, 1586, 1737
HaeII RGCGCY 1 cut(s) 165
HaeIII GGCC 4 cut(s) 105, 138, 336, 1264
HapII CCGG 1 cut(s) 1044
HgaI GACGC 1 cut(s) 978
HhaI GCGC 3 cut(s) 164, 676, 874
Hin1I GRCGYC 1 cut(s) 162
Hin6I GCGC 3 cut(s) 162, 674, 872
HinP1I GCGC 3 cut(s) 162, 674, 872
HindIII AAGCTT 1 cut(s) 1679
HinfI GANTC 8 cut(s) 446, 731, 817, 848, 934, 1791, 1825, 1830
HpaII CCGG 1 cut(s) 1044
HphI GGTGA 5 cut(s) 206, 356, 602, 766, 1048
Hpy166II GTNNAC 6 cut(s) 115, 512, 785, 1020, 1280, 1426
Hpy188I TCNGA 6 cut(s) 321, 434, 451, 736, 910, 1009
Hpy188III TCNNGA 3 cut(s) 1086, 1101, 1788
Hpy8I GTNNAC 6 cut(s) 115, 512, 785, 1020, 1280, 1426
Hpy99I CGWCG 1 cut(s) 556
HpyAV CCTTC 2 cut(s) 1411, 1582
HpyCH4III ACNGT 5 cut(s) 760, 1284, 1367, 1673, 1856
HpyCH4IV ACGT 3 cut(s) 514, 546, 1821
HpyF3I CTNAG 6 cut(s) 49, 205, 425, 606, 690, 1745
HpySE526I ACGT 3 cut(s) 514, 546, 1821
Hsp92I GRCGYC 1 cut(s) 162
HspAI GCGC 3 cut(s) 162, 674, 872
KasI GGCGCC 1 cut(s) 161
Ksp22I TGATCA 3 cut(s) 346, 975, 1057
KspI CCGCGG 1 cut(s) 1003
Kzo9I GATC 7 cut(s) 196, 346, 975, 1004, 1057, 1192, 1711
LguI GCTCTTC 1 cut(s) 1460
LmnI GCTCC 2 cut(s) 900, 1718
Lsp1109I GCAGC 2 cut(s) 1343, 1604
LweI GCATC 3 cut(s) 312, 901, 1079
MaeI CTAG 7 cut(s) 26, 101, 800, 831, 1407, 1614, 1788
MaeII ACGT 3 cut(s) 514, 546, 1821
MaeIII GTNAC 5 cut(s) 287, 754, 1560, 1572, 1732
MalI GATC 7 cut(s) 198, 348, 977, 1006, 1059, 1194, 1713
MbiI CCGCTC 1 cut(s) 805
MboI GATC 7 cut(s) 196, 346, 975, 1004, 1057, 1192, 1711
MhlI GDGCHC 5 cut(s) 372, 514, 787, 1282, 1472
Mly113I GGCGCC 1 cut(s) 162
MlyI GAGTC 2 cut(s) 455, 842
MmeI TCCRAC 2 cut(s) 423, 1463
Mph1103I ATGCAT 1 cut(s) 327
MroXI GAANNNNTTC 2 cut(s) 1127, 1829
MseI TTAA 6 cut(s) 14, 77, 741, 1445, 1704, 1842
MslI CAYNNNNRTG 2 cut(s) 122, 485
MspA1I CMGCKG 3 cut(s) 209, 1002, 1595
MspI CCGG 1 cut(s) 1044
MspR9I CCNGG 2 cut(s) 1473, 1716
Mva1269I GAATGC 2 cut(s) 565, 859
MvaI CCWGG 2 cut(s) 1473, 1716
MvnI CGCG 2 cut(s) 872, 1002
NarI GGCGCC 1 cut(s) 162
NdeI CATATG 1 cut(s) 123
NdeII GATC 7 cut(s) 196, 346, 975, 1004, 1057, 1192, 1711
NheI GCTAGC 2 cut(s) 830, 1406
NlaIV GGNNCC 3 cut(s) 163, 902, 1356
NmuCI GTSAC 2 cut(s) 754, 1732
NsbI TGCGCA 1 cut(s) 675
NsiI ATGCAT 1 cut(s) 327
NspI RCATGY 4 cut(s) 484, 783, 1414, 1561
PceI AGGCCT 1 cut(s) 336
PciI ACATGT 2 cut(s) 480, 1557
PciSI GCTCTTC 1 cut(s) 1460
PcsI WCGNNNNNNNCGW 2 cut(s) 560, 1210
PctI GAATGC 2 cut(s) 565, 859
PdmI GAANNNNTTC 2 cut(s) 1127, 1829
PfeI GAWTC 6 cut(s) 731, 817, 934, 1791, 1825, 1830
PfoI TCCNGGA 1 cut(s) 1714
PkrI GCNGC 3 cut(s) 796, 1333, 1594
PleI GAGTC 2 cut(s) 454, 842
PluTI GGCGCC 1 cut(s) 165
PpsI GAGTC 2 cut(s) 454, 842
Ppu21I YACGTR 1 cut(s) 515
PscI ACATGT 2 cut(s) 480, 1557
Psp6I CCWGG 2 cut(s) 1471, 1714
PspGI CCWGG 2 cut(s) 1471, 1714
PspN4I GGNNCC 3 cut(s) 163, 902, 1356
PspPI GGNCC 3 cut(s) 112, 127, 1262
PsrI GAACNNNNNNTAC 2 cut(s) 753, 785
PstI CTGCAG 1 cut(s) 1333
PstNI CAGNNNCTG 1 cut(s) 1013
PvuII CAGCTG 2 cut(s) 209, 1595
RsaI GTAC 5 cut(s) 7, 182, 236, 578, 1605
RsaNI GTAC 5 cut(s) 6, 181, 235, 577, 1604
RseI CAYNNNNRTG 2 cut(s) 122, 485
SacII CCGCGG 1 cut(s) 1003
SapI GCTCTTC 1 cut(s) 1460
SaqAI TTAA 6 cut(s) 14, 77, 741, 1445, 1704, 1842
SatI GCNGC 3 cut(s) 795, 1332, 1593
Sau3AI GATC 7 cut(s) 196, 346, 975, 1004, 1057, 1192, 1711
Sau96I GGNCC 3 cut(s) 112, 127, 1262
SchI GAGTC 2 cut(s) 455, 842
ScrFI CCNGG 2 cut(s) 1473, 1716
SduI GDGCHC 5 cut(s) 372, 514, 787, 1282, 1472
SfaNI GCATC 3 cut(s) 312, 901, 1079
SfcI CTRYAG 1 cut(s) 1329
SfoI GGCGCC 1 cut(s) 163
Sfr303I CCGCGG 1 cut(s) 1003
SgrBI CCGCGG 1 cut(s) 1003
SinI GGWCC 2 cut(s) 112, 127
SmiMI CAYNNNNRTG 2 cut(s) 122, 485
SmlI CTYRAG 3 cut(s) 371, 1452, 1539
SmoI CTYRAG 3 cut(s) 371, 1452, 1539
SseBI AGGCCT 1 cut(s) 336
SsiI CCGC 7 cut(s) 572, 794, 805, 834, 870, 1000, 1002
SspDI GGCGCC 1 cut(s) 161
SspI AATATT 2 cut(s) 397, 640
SspMI CTAG 7 cut(s) 26, 101, 800, 831, 1407, 1614, 1788
StuI AGGCCT 1 cut(s) 336
StyD4I CCNGG 2 cut(s) 1471, 1714
TaaI ACNGT 5 cut(s) 760, 1284, 1367, 1673, 1856
TaiI ACGT 3 cut(s) 517, 549, 1824
TaqI TCGA 9 cut(s) 141, 260, 392, 525, 711, 851, 1131, 1297, 1828
TauI GCSGC 1 cut(s) 797
TfiI GAWTC 6 cut(s) 731, 817, 934, 1791, 1825, 1830
Tru1I TTAA 6 cut(s) 14, 77, 741, 1445, 1704, 1842
Tru9I TTAA 6 cut(s) 14, 77, 741, 1445, 1704, 1842
TscAI CASTG 5 cut(s) 926, 985, 1287, 1372, 1678
TseFI GTSAC 2 cut(s) 754, 1732
TseI GCWGC 2 cut(s) 1331, 1592
Tsp45I GTSAC 2 cut(s) 754, 1732
TspRI CASTG 5 cut(s) 926, 985, 1287, 1372, 1678
VneI GTGCAC 3 cut(s) 510, 783, 1278
VpaK11BI GGWCC 2 cut(s) 112, 127
XapI RAATTY 5 cut(s) 309, 952, 1437, 1551, 1749
XbaI TCTAGA 1 cut(s) 1787
XceI RCATGY 4 cut(s) 484, 783, 1414, 1561
XcmI CCANNNNNNNNNTGG 2 cut(s) 77, 1514
XmnI GAANNNNTTC 2 cut(s) 1127, 1829
XspI CTAG 7 cut(s) 26, 101, 800, 831, 1407, 1614, 1788
Zsp2I ATGCAT 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.