Rw1G027010

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0017363
Physical Location & Seq
Reverse (-)
54342291 .. 54344166
1876 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G027010.1

Sequence Viewer

Length: 1839 bp
ATGCGTACCCTGTTAAAACCACTACTAGCACAAAACCCATGTTTCATCTTAGACTATGCACCAATTTTCCAATCCTTAACTGGGCAAAACTTGTTGAAGCTAGGCCAACAGGTCCACACCCATATGGTCCTGCGTGGCCTCGAACCCAATGCCTATCTTGGCGCCAAGATGGTTGCAATGTACGCCAGCTCTGGTGATCTACACTCAGCTGTAAATGTCTTTCACAGAGTAAAATACCCATCTCCACTTTTGTACAATTCGATTATTCGGGCTTATACCCTTCATGGTTACTCTGCGAGAACTATGGAAATTTATGGTCAGATGCATTGTTTAGGCCTAACGGGTGATCATTTTACCTACCCTTTTGTGCTCAAGTGTTGTGCAGAGTTGTCGAATATTTTGATAGGGAAATGTGTTCATGGGCTGAGCTTGAGAACTGGGTTGGAGTCTGATATGTATGTTGGGACTTCTTTGATTGACATGTATGTGAAATGTTGTGAGATGGGGAGTGCACGTAAGCTGTTCGATGAAATGTCTGTGAGAGACGTTTCGTCGTGGAATGCGTTGATTGCGGGGTACATGAGAGAGGGTGAGATTTGTTTTGCTGAGGAGTTGTTTGGACAAATGTGGTGCAAGAATATTGTGTCTTGGACTGCTATGATATCGGGGTATGCGCAGAATGGGCTGGCTGAGCAGGCATTGAGCGTGTTTGATGAGATGTTGAAGAATGATTCGGAGGTTAAGCCGAATTGGGTGACGGTAATGAGTGTTCTTCCTGCATGTGCACATTCGGCTGCACTAGAGCGGGGGAGGAAGATTCACAAGTTTGCTAGCGGGATTGGTTTGGACTTGAATAGTTCCATACAGACCGCGCTGGTAGCATGTTTTGATAGGATTCGTGGAAGTGAGAAGAATTTGGTTGTATGGAATACTATGATCACTGCTTATGCGTCCCATGCCCGCGGATCAGAAGCTGTGTCCACTTTTGAGGACATGATGAGCGCCGGTGTTCAACCTGATCATATAACATTCACGGGATTGTTATCTGGATGCAGTCATTCAGGGCTTGTTGATGTTGGCTTGAAATACTTTGATGGCATGAAGACAGTATACTCTGTTGAACCAAGAGTTGAACATTATGCTTGTGTTGTTGATCTATTGGGTCGTGCAGGGCGATTGATGGAAGCAGTGGATGTCGTAGATAAAATGCCAATGCAAGCAGGGCCAAGCATTTGGGGTGCACTGTTATCAGCTTGTCGAAACCACCCAAACTTGGAAATTGCCGAAACTGCAGCCAGAAATCTCTTCATATTGGAACCAGACAACAGTGGCAACTATGTCCTGCTATCTAATATATATGCTGAAGCTGGCATGTGGAAGGAGGTGGACAAATTGAGAATTCTATTAAAATCTCAAGGGATGAGGAAGAGCCCTGGAGGCAGTTGGATAGAGGTCAATGGGAAAGCCCATCTGTTTCTTGGTGGAGATACATCTCACTCTCAAGCAAATGAAATTTACATGTTACTGGAGGAGTTACCGAAAAGGATGAAGGCAGCTGGTTATGTACCTGACACTAGGTTTGCTTTGCATGATGTTAGTGAAGAGGAGAAAGAACATAACCTGACAACCCACAGTGAAAAGCTTGCCATTGCCTTTGGACTTCTTAATACCGATCCTGGAGCAGTTCTTCGTGTGACAAAGAACCTTAGAATTTGTGGAGATTGTCATACAGCCACCAAGTTCATATCTAGAATCTATGGGAGGGAGATTATCGTAAGAGACGTGAATCGATTCCATCACTTTAAAGATGGGCACTGTTCATGTGGAGATTATTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

612

Amino Acids

67.91

Weight (kDa)

6.56

Isoelectric Point (pI)

36.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 212 - 262 4.9e-10 PPR repeat family
PPR PF01535 215 - 243 2.9e-09 PPR repeat
PPR_2 PF13041 305 - 352 7e-13 PPR repeat family
E_motif PF20431 422 - 484 3.1e-24 E motif
DYW_deaminase PF14432 520 - 612 2.2e-45 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017363)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18340
malus_domestica MD07G1165900.v1.1
prunus_persica Prupe.2G205400_v2.0.a1
pyrus_communis pycom07g16150
rosa_chinensis RchiOBHm_Chr1g0362051
rosa_laevigata RLG00000002139 RLG00000027677
rosa_multiflora Rmu_sc0010614.1_g000005 Rmu_sc0020775.1_g000001
rosa_roxburghii Rroxscaffold_4G00294570
rosa_rugosa Rorug01G0293100
rosa_samantha Rh1BG266600
rosa_wichuraiana Rw1G027010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 675
AccB1I GGYRCC 1 cut(s) 161
AccBSI CCGCTC 1 cut(s) 805
AccI GTMKAC 1 cut(s) 1110
AccII CGCG 2 cut(s) 872, 963
AciI CCGC 6 cut(s) 572, 805, 834, 870, 961, 963
AclWI GGATC 2 cut(s) 973, 1667
AcsI RAATTY 5 cut(s) 309, 913, 1398, 1512, 1710
AcuI CTGAAG 1 cut(s) 1383
AcyI GRCGYC 1 cut(s) 162
AfaI GTAC 5 cut(s) 7, 182, 254, 578, 1566
AfiI CCNNNNNNNGG 2 cut(s) 81, 1273
AflIII ACRYGT 2 cut(s) 480, 1518
AgsI TTSAA 7 cut(s) 97, 724, 853, 1013, 1084, 1121, 1133
AhdI GACNNNNNGTC 1 cut(s) 550
AjiI CACGTC 1 cut(s) 1783
AjnI CCWGG 2 cut(s) 1432, 1675
Alw21I GWGCWC 4 cut(s) 372, 514, 787, 1243
Alw26I GTCTC 2 cut(s) 537, 1773
Alw44I GTGCAC 3 cut(s) 510, 783, 1239
AlwI GGATC 2 cut(s) 973, 1667
AlwNI CAGNNNCTG 1 cut(s) 974
AoxI GGCC 4 cut(s) 103, 136, 334, 1223
ApaLI GTGCAC 3 cut(s) 510, 783, 1239
ApeKI GCWGC 3 cut(s) 794, 1292, 1553
ApoI RAATTY 5 cut(s) 309, 913, 1398, 1512, 1710
ArsI GACNNNNNNTTYG 2 cut(s) 1562, 1594
Asp700I GAANNNNTTC 1 cut(s) 1790
AspLEI GCGC 4 cut(s) 164, 676, 874, 1004
AspS9I GGNCC 3 cut(s) 112, 127, 1223
AsuHPI GGTGA 4 cut(s) 206, 356, 602, 766
AsuNHI GCTAGC 1 cut(s) 830
AvaII GGWCC 2 cut(s) 112, 127
BaeGI GKGCMC 4 cut(s) 514, 787, 1243, 1815
BanI GGYRCC 1 cut(s) 161
BanII GRGCYC 1 cut(s) 1433
BarI GAAGNNNNNNTAC 2 cut(s) 1094, 1126
BbsI GAAGAC 1 cut(s) 1109
Bbv12I GWGCWC 4 cut(s) 372, 514, 787, 1243
BbvCI CCTCAGC 1 cut(s) 606
BbvI GCAGC 3 cut(s) 781, 1304, 1565
BccI CCATC 8 cut(s) 163, 247, 496, 1088, 1174, 1476, 1802, 1803
BcgI CGANNNNNNTGC 4 cut(s) 131, 165, 372, 406
BciT130I CCWGG 2 cut(s) 1434, 1677
BclI TGATCA 3 cut(s) 346, 936, 1018
BcoDI GTCTC 2 cut(s) 537, 1773
BfaI CTAG 6 cut(s) 26, 101, 800, 831, 1575, 1749
BfmI CTRYAG 1 cut(s) 1290
BfoI RGCGCY 2 cut(s) 165, 1005
BglI GCCNNNNNGGC 1 cut(s) 1437
BisI GCNGC 3 cut(s) 795, 1293, 1554
BlpI GCTNAGC 2 cut(s) 425, 690
BlsI GCNGC 3 cut(s) 796, 1294, 1555
Bme1390I CCNGG 2 cut(s) 1434, 1677
Bme18I GGWCC 2 cut(s) 112, 127
BmeRI GACNNNNNGTC 1 cut(s) 550
BmgBI CACGTC 1 cut(s) 1783
BmgT120I GGNCC 3 cut(s) 112, 127, 1223
BmiI GGNNCC 2 cut(s) 163, 1317
BmrFI CCNGG 2 cut(s) 1434, 1677
BmrI ACTGGG 2 cut(s) 90, 447
BmsI GCATC 2 cut(s) 312, 1040
BmtI GCTAGC 1 cut(s) 834
BmuI ACTGGG 2 cut(s) 90, 447
BpiI GAAGAC 1 cut(s) 1109
BpmI CTGGAG 3 cut(s) 1455, 1547, 1698
Bpu10I CCTNAGC 1 cut(s) 606
Bpu1102I GCTNAGC 2 cut(s) 425, 690
BpuEI CTTGAG 4 cut(s) 356, 451, 1398, 1485
Bsa29I ATCGAT 1 cut(s) 1789
BsaAI YACGTR 1 cut(s) 515
BsaBI GATNNNNATC 1 cut(s) 1042
BsaHI GRCGYC 1 cut(s) 162
BsaJI CCNNGG 2 cut(s) 961, 1432
BsaXI ACNNNNNCTCC 2 cut(s) 499, 529
Bsc4I CCNNNNNNNGG 2 cut(s) 81, 1273
Bse118I RCCGGY 1 cut(s) 1004
Bse1I ACTGG 3 cut(s) 85, 442, 1530
Bse3DI GCAATG 2 cut(s) 183, 1647
Bse8I GATNNNNATC 1 cut(s) 1042
BseBI CCWGG 2 cut(s) 1434, 1677
BseCI ATCGAT 1 cut(s) 1789
BseDI CCNNGG 2 cut(s) 961, 1432
BseGI GGATG 4 cut(s) 1055, 1198, 1425, 1551
BseJI GATNNNNATC 1 cut(s) 1042
BseLI CCNNNNNNNGG 2 cut(s) 81, 1273
BseMI GCAATG 2 cut(s) 183, 1647
BseMII CTCAG 4 cut(s) 219, 416, 597, 681
BseNI ACTGG 3 cut(s) 85, 442, 1530
BseRI GAGGAG 3 cut(s) 623, 1544, 1619
BseSI GKGCMC 4 cut(s) 514, 787, 1243, 1815
BseXI GCAGC 3 cut(s) 781, 1304, 1565
BsgI GTGCAG 3 cut(s) 402, 780, 1188
Bsh1236I CGCG 2 cut(s) 872, 963
BshFI GGCC 4 cut(s) 105, 138, 336, 1225
BshNI GGYRCC 1 cut(s) 161
BshVI ATCGAT 1 cut(s) 1789
BsiHKAI GWGCWC 4 cut(s) 372, 514, 787, 1243
BsiSI CCGG 1 cut(s) 1005
BslFI GGGAC 2 cut(s) 478, 937
BslI CCNNNNNNNGG 2 cut(s) 81, 1273
BsmAI GTCTC 2 cut(s) 537, 1773
BsmBI CGTCTC 2 cut(s) 537, 1773
BsmFI GGGAC 2 cut(s) 478, 937
BsmI GAATGC 1 cut(s) 565
BsnI GGCC 4 cut(s) 105, 138, 336, 1225
Bsp1286I GDGCHC 6 cut(s) 372, 514, 787, 1243, 1433, 1815
Bsp1407I TGTACA 1 cut(s) 252
Bsp143I GATC 7 cut(s) 196, 346, 936, 965, 1018, 1153, 1672
Bsp1720I GCTNAGC 2 cut(s) 425, 690
BspACI CCGC 6 cut(s) 572, 805, 834, 870, 961, 963
BspANI GGCC 4 cut(s) 105, 138, 336, 1225
BspCNI CTCAG 4 cut(s) 218, 417, 598, 682
BspDI ATCGAT 1 cut(s) 1789
BspFNI CGCG 2 cut(s) 872, 963
BspLI GGNNCC 2 cut(s) 163, 1317
BspMAI CTGCAG 1 cut(s) 1294
BspOI GCTAGC 1 cut(s) 834
BspPI GGATC 2 cut(s) 973, 1667
BspQI GCTCTTC 1 cut(s) 1421
BspT107I GGYRCC 1 cut(s) 161
BsrBI CCGCTC 1 cut(s) 805
BsrDI GCAATG 2 cut(s) 183, 1647
BsrFI RCCGGY 1 cut(s) 1004
BsrGI TGTACA 1 cut(s) 252
BsrI ACTGG 3 cut(s) 85, 442, 1530
BssAI RCCGGY 1 cut(s) 1004
BssECI CCNNGG 2 cut(s) 961, 1432
BssMI GATC 7 cut(s) 196, 346, 936, 965, 1018, 1153, 1672
BssNAI GTATAC 1 cut(s) 1111
BssNI GRCGYC 1 cut(s) 162
Bst1107I GTATAC 1 cut(s) 1111
Bst2UI CCWGG 2 cut(s) 1434, 1677
Bst4CI ACNGT 6 cut(s) 760, 1108, 1245, 1328, 1634, 1817
Bst6I CTCTTC 3 cut(s) 1310, 1421, 1596
BstACI GRCGYC 1 cut(s) 162
BstAUI TGTACA 1 cut(s) 252
BstBAI YACGTR 1 cut(s) 515
BstC8I GCNNGC 8 cut(s) 187, 687, 696, 832, 961, 1218, 1369, 1644
BstDEI CTNAG 6 cut(s) 49, 205, 425, 606, 690, 1706
BstDSI CCRYGG 1 cut(s) 961
BstF5I GGATG 4 cut(s) 1055, 1198, 1425, 1551
BstFNI CGCG 2 cut(s) 872, 963
BstH2I RGCGCY 2 cut(s) 165, 1005
BstHHI GCGC 4 cut(s) 164, 676, 874, 1004
BstKTI GATC 7 cut(s) 199, 349, 939, 968, 1021, 1156, 1675
BstMAI GTCTC 2 cut(s) 537, 1773
BstMBI GATC 7 cut(s) 196, 346, 936, 965, 1018, 1153, 1672
BstNI CCWGG 2 cut(s) 1434, 1677
BstNSI RCATGY 5 cut(s) 484, 783, 885, 1375, 1522
BstSCI CCNGG 2 cut(s) 1432, 1675
BstSFI CTRYAG 1 cut(s) 1290
BstSLI GKGCMC 4 cut(s) 514, 787, 1243, 1815
BstUI CGCG 2 cut(s) 872, 963
BstV1I GCAGC 3 cut(s) 781, 1304, 1565
BstV2I GAAGAC 1 cut(s) 1109
BstXI CCANNNNNNTGG 1 cut(s) 1233
BstZ17I GTATAC 1 cut(s) 1111
Bsu15I ATCGAT 1 cut(s) 1789
BsuRI GGCC 4 cut(s) 105, 138, 336, 1225
BsuTUI ATCGAT 1 cut(s) 1789
BtgI CCRYGG 1 cut(s) 961
BtrI CACGTC 1 cut(s) 1783
BtsCI GGATG 4 cut(s) 1055, 1198, 1425, 1551
BtsI GCAGTG 2 cut(s) 939, 1194
BtsIMutI CAGTG 6 cut(s) 939, 1194, 1241, 1333, 1639, 1813
Cac8I GCNNGC 8 cut(s) 187, 687, 696, 832, 961, 1218, 1369, 1644
CaiI CAGNNNCTG 1 cut(s) 974
CfoI GCGC 4 cut(s) 164, 676, 874, 1004
Cfr10I RCCGGY 1 cut(s) 1004
Cfr13I GGNCC 3 cut(s) 112, 127, 1223
Cfr42I CCGCGG 1 cut(s) 964
ClaI ATCGAT 1 cut(s) 1789
CseI GACGC 1 cut(s) 939
Csp6I GTAC 5 cut(s) 6, 181, 253, 577, 1565
CviQI GTAC 5 cut(s) 6, 181, 253, 577, 1565
DdeI CTNAG 6 cut(s) 49, 205, 425, 606, 690, 1706
DinI GGCGCC 1 cut(s) 163
DpnI GATC 7 cut(s) 198, 348, 938, 967, 1020, 1155, 1674
DpnII GATC 7 cut(s) 196, 346, 936, 965, 1018, 1153, 1672
DraI TTTAAA 1 cut(s) 1804
DriI GACNNNNNGTC 1 cut(s) 550
Eam1104I CTCTTC 3 cut(s) 1310, 1421, 1596
Eam1105I GACNNNNNGTC 1 cut(s) 550
EarI CTCTTC 3 cut(s) 1310, 1421, 1596
Eco147I AGGCCT 1 cut(s) 336
Eco24I GRGCYC 1 cut(s) 1433
Eco32I GATATC 1 cut(s) 663
Eco47I GGWCC 2 cut(s) 112, 127
Eco57I CTGAAG 1 cut(s) 1383
EcoRI GAATTC 1 cut(s) 1398
EcoRII CCWGG 2 cut(s) 1432, 1675
EcoRV GATATC 1 cut(s) 663
EcoT22I ATGCAT 1 cut(s) 327
EcoT38I GRGCYC 1 cut(s) 1433
EgeI GGCGCC 1 cut(s) 163
EheI GGCGCC 1 cut(s) 163
Esp3I CGTCTC 2 cut(s) 537, 1773
FaqI GGGAC 2 cut(s) 478, 937
FauI CCCGC 4 cut(s) 565, 798, 827, 968
FauNDI CATATG 1 cut(s) 123
FbaI TGATCA 3 cut(s) 346, 936, 1018
FblI GTMKAC 1 cut(s) 1110
Fnu4HI GCNGC 3 cut(s) 795, 1293, 1554
FokI GGATG 4 cut(s) 1062, 1205, 1432, 1558
FriOI GRGCYC 1 cut(s) 1433
Fsp4HI GCNGC 3 cut(s) 795, 1293, 1554
FspBI CTAG 6 cut(s) 26, 101, 800, 831, 1575, 1749
FspI TGCGCA 1 cut(s) 675
GlaI GCGC 4 cut(s) 163, 675, 873, 1003
GluI GCNGC 3 cut(s) 795, 1293, 1554
GsuI CTGGAG 3 cut(s) 1455, 1547, 1698
HaeII RGCGCY 2 cut(s) 165, 1005
HaeIII GGCC 4 cut(s) 105, 138, 336, 1225
HapII CCGG 1 cut(s) 1005
HgaI GACGC 1 cut(s) 939
HhaI GCGC 4 cut(s) 164, 676, 874, 1004
Hin1I GRCGYC 1 cut(s) 162
Hin6I GCGC 4 cut(s) 162, 674, 872, 1002
HinP1I GCGC 4 cut(s) 162, 674, 872, 1002
HindIII AAGCTT 1 cut(s) 1640
HinfI GANTC 7 cut(s) 446, 731, 817, 895, 1752, 1786, 1791
HpaII CCGG 1 cut(s) 1005
HphI GGTGA 4 cut(s) 206, 356, 602, 766
Hpy166II GTNNAC 7 cut(s) 115, 512, 785, 981, 1111, 1241, 1387
Hpy188I TCNGA 4 cut(s) 321, 451, 736, 970
Hpy188III TCNNGA 2 cut(s) 1047, 1749
Hpy8I GTNNAC 7 cut(s) 115, 512, 785, 981, 1111, 1241, 1387
Hpy99I CGWCG 1 cut(s) 556
HpyAV CCTTC 3 cut(s) 290, 1372, 1543
HpyCH4III ACNGT 6 cut(s) 760, 1108, 1245, 1328, 1634, 1817
HpyCH4IV ACGT 3 cut(s) 514, 546, 1782
HpyF3I CTNAG 6 cut(s) 49, 205, 425, 606, 690, 1706
HpySE526I ACGT 3 cut(s) 514, 546, 1782
Hsp92I GRCGYC 1 cut(s) 162
HspAI GCGC 4 cut(s) 162, 674, 872, 1002
KasI GGCGCC 1 cut(s) 161
Ksp22I TGATCA 3 cut(s) 346, 936, 1018
KspI CCGCGG 1 cut(s) 964
Kzo9I GATC 7 cut(s) 196, 346, 936, 965, 1018, 1153, 1672
LguI GCTCTTC 1 cut(s) 1421
LmnI GCTCC 1 cut(s) 1679
Lsp1109I GCAGC 3 cut(s) 781, 1304, 1565
LweI GCATC 2 cut(s) 312, 1040
MaeI CTAG 6 cut(s) 26, 101, 800, 831, 1575, 1749
MaeII ACGT 3 cut(s) 514, 546, 1782
MaeIII GTNAC 5 cut(s) 287, 754, 1521, 1533, 1693
MalI GATC 7 cut(s) 198, 348, 938, 967, 1020, 1155, 1674
MbiI CCGCTC 1 cut(s) 805
MboI GATC 7 cut(s) 196, 346, 936, 965, 1018, 1153, 1672
MboII GAAGA 9 cut(s) 736, 764, 826, 922, 1114, 1297, 1438, 1613, 1679
MhlI GDGCHC 6 cut(s) 372, 514, 787, 1243, 1433, 1815
Mly113I GGCGCC 1 cut(s) 162
MlyI GAGTC 1 cut(s) 455
MmeI TCCRAC 2 cut(s) 423, 1424
Mph1103I ATGCAT 1 cut(s) 327
MroXI GAANNNNTTC 1 cut(s) 1790
MseI TTAA 6 cut(s) 14, 77, 741, 1406, 1665, 1803
MslI CAYNNNNRTG 2 cut(s) 122, 485
MspA1I CMGCKG 3 cut(s) 209, 963, 1556
MspI CCGG 1 cut(s) 1005
MspR9I CCNGG 2 cut(s) 1434, 1677
Mva1269I GAATGC 1 cut(s) 565
MvaI CCWGG 2 cut(s) 1434, 1677
MvnI CGCG 2 cut(s) 872, 963
NarI GGCGCC 1 cut(s) 162
NdeI CATATG 1 cut(s) 123
NdeII GATC 7 cut(s) 196, 346, 936, 965, 1018, 1153, 1672
NheI GCTAGC 1 cut(s) 830
NlaIV GGNNCC 2 cut(s) 163, 1317
NmuCI GTSAC 2 cut(s) 754, 1693
NsbI TGCGCA 1 cut(s) 675
NsiI ATGCAT 1 cut(s) 327
NspI RCATGY 5 cut(s) 484, 783, 885, 1375, 1522
PceI AGGCCT 1 cut(s) 336
PciI ACATGT 2 cut(s) 480, 1518
PciSI GCTCTTC 1 cut(s) 1421
PcsI WCGNNNNNNNCGW 3 cut(s) 560, 1171, 1779
PctI GAATGC 1 cut(s) 565
PdmI GAANNNNTTC 1 cut(s) 1790
PfeI GAWTC 6 cut(s) 731, 817, 895, 1752, 1786, 1791
PfoI TCCNGGA 1 cut(s) 1675
PkrI GCNGC 3 cut(s) 796, 1294, 1555
PleI GAGTC 1 cut(s) 454
PluTI GGCGCC 1 cut(s) 165
PpsI GAGTC 1 cut(s) 454
Ppu21I YACGTR 1 cut(s) 515
PscI ACATGT 2 cut(s) 480, 1518
Psp6I CCWGG 2 cut(s) 1432, 1675
PspGI CCWGG 2 cut(s) 1432, 1675
PspN4I GGNNCC 2 cut(s) 163, 1317
PspPI GGNCC 3 cut(s) 112, 127, 1223
PsrI GAACNNNNNNTAC 2 cut(s) 753, 785
PstI CTGCAG 1 cut(s) 1294
PstNI CAGNNNCTG 1 cut(s) 974
PvuII CAGCTG 2 cut(s) 209, 1556
RsaI GTAC 5 cut(s) 7, 182, 254, 578, 1566
RsaNI GTAC 5 cut(s) 6, 181, 253, 577, 1565
RseI CAYNNNNRTG 2 cut(s) 122, 485
SacII CCGCGG 1 cut(s) 964
SapI GCTCTTC 1 cut(s) 1421
SaqAI TTAA 6 cut(s) 14, 77, 741, 1406, 1665, 1803
SatI GCNGC 3 cut(s) 795, 1293, 1554
Sau3AI GATC 7 cut(s) 196, 346, 936, 965, 1018, 1153, 1672
Sau96I GGNCC 3 cut(s) 112, 127, 1223
SchI GAGTC 1 cut(s) 455
ScrFI CCNGG 2 cut(s) 1434, 1677
SduI GDGCHC 6 cut(s) 372, 514, 787, 1243, 1433, 1815
SfaNI GCATC 2 cut(s) 312, 1040
SfcI CTRYAG 1 cut(s) 1290
SfoI GGCGCC 1 cut(s) 163
Sfr303I CCGCGG 1 cut(s) 964
SgrAI CRCCGGYG 1 cut(s) 1004
SgrBI CCGCGG 1 cut(s) 964
SinI GGWCC 2 cut(s) 112, 127
SmiMI CAYNNNNRTG 2 cut(s) 122, 485
SmlI CTYRAG 4 cut(s) 371, 430, 1413, 1500
SmoI CTYRAG 4 cut(s) 371, 430, 1413, 1500
SseBI AGGCCT 1 cut(s) 336
SsiI CCGC 6 cut(s) 572, 805, 834, 870, 961, 963
SspDI GGCGCC 1 cut(s) 161
SspI AATATT 2 cut(s) 397, 640
SspMI CTAG 6 cut(s) 26, 101, 800, 831, 1575, 1749
StuI AGGCCT 1 cut(s) 336
StyD4I CCNGG 2 cut(s) 1432, 1675
TaaI ACNGT 6 cut(s) 760, 1108, 1245, 1328, 1634, 1817
TaiI ACGT 3 cut(s) 517, 549, 1785
TaqI TCGA 6 cut(s) 141, 260, 392, 525, 1258, 1789
TatI WGTACW 1 cut(s) 252
TfiI GAWTC 6 cut(s) 731, 817, 895, 1752, 1786, 1791
Tru1I TTAA 6 cut(s) 14, 77, 741, 1406, 1665, 1803
Tru9I TTAA 6 cut(s) 14, 77, 741, 1406, 1665, 1803
TscAI CASTG 6 cut(s) 946, 1194, 1248, 1333, 1639, 1820
TseFI GTSAC 2 cut(s) 754, 1693
TseI GCWGC 3 cut(s) 794, 1292, 1553
Tsp45I GTSAC 2 cut(s) 754, 1693
TspRI CASTG 6 cut(s) 946, 1194, 1248, 1333, 1639, 1820
VneI GTGCAC 3 cut(s) 510, 783, 1239
VpaK11BI GGWCC 2 cut(s) 112, 127
XapI RAATTY 5 cut(s) 309, 913, 1398, 1512, 1710
XbaI TCTAGA 1 cut(s) 1748
XceI RCATGY 5 cut(s) 484, 783, 885, 1375, 1522
XcmI CCANNNNNNNNNTGG 2 cut(s) 77, 1475
XmiI GTMKAC 1 cut(s) 1110
XmnI GAANNNNTTC 1 cut(s) 1790
XspI CTAG 6 cut(s) 26, 101, 800, 831, 1575, 1749
Zsp2I ATGCAT 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.