Rmu_sc0020775.1_g000001

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0020775.1
OG0017363
Physical Location & Seq
Forward (+)
1 .. 2183
2183 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0020775.1_g000001.1.cds

Sequence Viewer

Length: 1211 bp
gccaacaggtccacacccatatggttctgcgtggcctcgaacccaatgcctatcttggcgccaaaatggttgcaatgtacgccagctctggtgatcttgactcagctgtaaatgtctttcacagagtaaaatacccatctccacttttgtacaattcgattattcgggcttatacccttcatggttactctgcgagaactatggaaatttatggtcagatgcattgtttaggcctaaagggtgatcattttacctacccttttgtgctcaagtgttgtgcagagttgtcgaatattttgatagggaaatgtgttcatgggctgagcttgagaactgggttggagtctgatatgtatgttgggacttctttgattgacatgtatgtgaaatgtagtgagatggggagtgcacgtaagctgttcgatgaaatgtctgtgagagacgtttcgtcgtggaatgcgttgattgcggggtacatgagagagggtgagatttgttttgctgaggagttgtttggacaaatttggtgcaagaatattgtgtcttggactgctatgatatcggggtatgcgcagaatgggctggctgagcaggcattgagcgtgtttgatgagatgttgaagaatgattcggaggttaagccgaattgggtgacggtaatgagtgttcttcctgcatgtgcacattcggctgcgctagagcgggggaggaagattcacaagtttgctagcgggattggtttggactcgaatagttccatacagaccgcgctggtagctatgtatgctaaatgtgggagcctttctgatgctcgtcaatgttttgataggattcgtcgaagtgagaagaatttggttgtatggaatactatgatcactgcttatgcgtcccatgcccgcggatcagaagctgtgtccacttttgaggacatgatgagcgccggtgttcaacctgatcatattacattcacgggattgttatctggatgcagtcattcagggcttgttgatgttggcttgaaatactttgatggcatgaagacagtatactctgttgaacctagagttgaacattatgcttgtgttgttgatctattgggtcgtgcagggcgattgatggaagcaatggatgtcgtagataaaatgccaatgcaagcagggccaagcatttggggtgcactgttatcagcttgtcgaaaccacccaaacttg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

403

Amino Acids

44.4

Weight (kDa)

6.55

Isoelectric Point (pI)

41.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017363)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18340
malus_domestica MD07G1165900.v1.1
prunus_persica Prupe.2G205400_v2.0.a1
pyrus_communis pycom07g16150
rosa_chinensis RchiOBHm_Chr1g0362051
rosa_laevigata RLG00000002139 RLG00000027677
rosa_multiflora Rmu_sc0010614.1_g000005 Rmu_sc0020775.1_g000001
rosa_roxburghii Rroxscaffold_4G00294570
rosa_rugosa Rorug01G0293100
rosa_samantha Rh1BG266600
rosa_wichuraiana Rw1G027010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 572
AccB1I GGYRCC 1 cut(s) 58
AccBSI CCGCTC 1 cut(s) 702
AccI GTMKAC 1 cut(s) 1046
AccII CGCG 2 cut(s) 769, 899
AciI CCGC 6 cut(s) 469, 702, 731, 767, 897, 899
AclWI GGATC 1 cut(s) 909
AcsI RAATTY 3 cut(s) 206, 521, 849
AcyI GRCGYC 1 cut(s) 59
AfaI GTAC 3 cut(s) 79, 151, 475
AflIII ACRYGT 1 cut(s) 377
AgsI TTSAA 5 cut(s) 621, 949, 1020, 1057, 1069
AhdI GACNNNNNGTC 1 cut(s) 447
AluBI AGCT 7 cut(s) 86, 106, 326, 417, 778, 910, 1189
AluI AGCT 7 cut(s) 86, 106, 326, 417, 778, 910, 1189
Alw21I GWGCWC 4 cut(s) 269, 411, 684, 1179
Alw26I GTCTC 1 cut(s) 434
Alw44I GTGCAC 3 cut(s) 407, 680, 1175
AlwI GGATC 1 cut(s) 909
AlwNI CAGNNNCTG 1 cut(s) 910
AoxI GGCC 3 cut(s) 33, 231, 1159
ApaLI GTGCAC 3 cut(s) 407, 680, 1175
ApeKI GCWGC 1 cut(s) 691
ApoI RAATTY 3 cut(s) 206, 521, 849
AspLEI GCGC 5 cut(s) 61, 573, 696, 771, 940
AspS9I GGNCC 2 cut(s) 9, 1159
AsuHPI GGTGA 4 cut(s) 103, 253, 499, 663
AsuNHI GCTAGC 1 cut(s) 727
AvaII GGWCC 1 cut(s) 9
BaeGI GKGCMC 3 cut(s) 411, 684, 1179
BanI GGYRCC 1 cut(s) 58
BarI GAAGNNNNNNTAC 2 cut(s) 1030, 1062
BbsI GAAGAC 1 cut(s) 1045
Bbv12I GWGCWC 4 cut(s) 269, 411, 684, 1179
BbvCI CCTCAGC 1 cut(s) 503
BbvI GCAGC 1 cut(s) 678
BccI CCATC 4 cut(s) 144, 393, 1024, 1110
BcgI CGANNNNNNTGC 4 cut(s) 28, 62, 269, 303
BclI TGATCA 3 cut(s) 243, 872, 954
BcoDI GTCTC 1 cut(s) 434
BfaI CTAG 3 cut(s) 697, 728, 1061
BfoI RGCGCY 2 cut(s) 62, 941
BisI GCNGC 1 cut(s) 692
BlpI GCTNAGC 2 cut(s) 322, 587
BlsI GCNGC 1 cut(s) 693
Bme18I GGWCC 1 cut(s) 9
BmeRI GACNNNNNGTC 1 cut(s) 447
BmgT120I GGNCC 2 cut(s) 9, 1159
BmiI GGNNCC 2 cut(s) 60, 799
BmrI ACTGGG 1 cut(s) 344
BmsI GCATC 3 cut(s) 209, 798, 976
BmtI GCTAGC 1 cut(s) 731
BmuI ACTGGG 1 cut(s) 344
BpiI GAAGAC 1 cut(s) 1045
Bpu10I CCTNAGC 1 cut(s) 503
Bpu1102I GCTNAGC 2 cut(s) 322, 587
BpuEI CTTGAG 2 cut(s) 253, 348
BsaAI YACGTR 1 cut(s) 412
BsaBI GATNNNNATC 1 cut(s) 978
BsaHI GRCGYC 1 cut(s) 59
BsaJI CCNNGG 1 cut(s) 897
BsaXI ACNNNNNCTCC 2 cut(s) 396, 426
Bse118I RCCGGY 1 cut(s) 940
Bse1I ACTGG 1 cut(s) 339
Bse3DI GCAATG 2 cut(s) 80, 1130
Bse8I GATNNNNATC 1 cut(s) 978
BseDI CCNNGG 1 cut(s) 897
BseGI GGATG 2 cut(s) 991, 1134
BseJI GATNNNNATC 1 cut(s) 978
BseMI GCAATG 2 cut(s) 80, 1130
BseMII CTCAG 4 cut(s) 116, 313, 494, 578
BseNI ACTGG 1 cut(s) 339
BseRI GAGGAG 1 cut(s) 520
BseSI GKGCMC 3 cut(s) 411, 684, 1179
BseXI GCAGC 1 cut(s) 678
BsgI GTGCAG 2 cut(s) 299, 1124
Bsh1236I CGCG 2 cut(s) 769, 899
BshFI GGCC 3 cut(s) 35, 233, 1161
BshNI GGYRCC 1 cut(s) 58
BsiHKAI GWGCWC 4 cut(s) 269, 411, 684, 1179
BsiSI CCGG 1 cut(s) 941
BslFI GGGAC 2 cut(s) 375, 873
BsmAI GTCTC 1 cut(s) 434
BsmBI CGTCTC 1 cut(s) 434
BsmFI GGGAC 2 cut(s) 375, 873
BsmI GAATGC 1 cut(s) 462
BsnI GGCC 3 cut(s) 35, 233, 1161
Bsp1286I GDGCHC 4 cut(s) 269, 411, 684, 1179
Bsp1407I TGTACA 1 cut(s) 149
Bsp143I GATC 6 cut(s) 93, 243, 872, 901, 954, 1089
Bsp1720I GCTNAGC 2 cut(s) 322, 587
BspACI CCGC 6 cut(s) 469, 702, 731, 767, 897, 899
BspANI GGCC 3 cut(s) 35, 233, 1161
BspCNI CTCAG 4 cut(s) 115, 314, 495, 579
BspFNI CGCG 2 cut(s) 769, 899
BspLI GGNNCC 2 cut(s) 60, 799
BspOI GCTAGC 1 cut(s) 731
BspPI GGATC 1 cut(s) 909
BspT107I GGYRCC 1 cut(s) 58
BsrBI CCGCTC 1 cut(s) 702
BsrDI GCAATG 2 cut(s) 80, 1130
BsrFI RCCGGY 1 cut(s) 940
BsrGI TGTACA 1 cut(s) 149
BsrI ACTGG 1 cut(s) 339
BssAI RCCGGY 1 cut(s) 940
BssECI CCNNGG 1 cut(s) 897
BssMI GATC 6 cut(s) 93, 243, 872, 901, 954, 1089
BssNAI GTATAC 1 cut(s) 1047
BssNI GRCGYC 1 cut(s) 59
Bst1107I GTATAC 1 cut(s) 1047
Bst4CI ACNGT 3 cut(s) 657, 1044, 1181
BstACI GRCGYC 1 cut(s) 59
BstAUI TGTACA 1 cut(s) 149
BstBAI YACGTR 1 cut(s) 412
BstC8I GCNNGC 6 cut(s) 84, 584, 593, 729, 897, 1154
BstDEI CTNAG 4 cut(s) 102, 322, 503, 587
BstDSI CCRYGG 1 cut(s) 897
BstF5I GGATG 2 cut(s) 991, 1134
BstFNI CGCG 2 cut(s) 769, 899
BstH2I RGCGCY 2 cut(s) 62, 941
BstHHI GCGC 5 cut(s) 61, 573, 696, 771, 940
BstKTI GATC 6 cut(s) 96, 246, 875, 904, 957, 1092
BstMAI GTCTC 1 cut(s) 434
BstMBI GATC 6 cut(s) 93, 243, 872, 901, 954, 1089
BstNSI RCATGY 2 cut(s) 381, 680
BstSLI GKGCMC 3 cut(s) 411, 684, 1179
BstUI CGCG 2 cut(s) 769, 899
BstV1I GCAGC 1 cut(s) 678
BstV2I GAAGAC 1 cut(s) 1045
BstXI CCANNNNNNTGG 1 cut(s) 1169
BstZ17I GTATAC 1 cut(s) 1047
BsuRI GGCC 3 cut(s) 35, 233, 1161
BtgI CCRYGG 1 cut(s) 897
BtsCI GGATG 2 cut(s) 991, 1134
BtsI GCAGTG 1 cut(s) 875
BtsIMutI CAGTG 2 cut(s) 875, 1177
Cac8I GCNNGC 6 cut(s) 84, 584, 593, 729, 897, 1154
CaiI CAGNNNCTG 1 cut(s) 910
CfoI GCGC 5 cut(s) 61, 573, 696, 771, 940
Cfr10I RCCGGY 1 cut(s) 940
Cfr13I GGNCC 2 cut(s) 9, 1159
Cfr42I CCGCGG 1 cut(s) 900
CseI GACGC 1 cut(s) 875
Csp6I GTAC 3 cut(s) 78, 150, 474
CviAII CATG 8 cut(s) 181, 316, 378, 477, 677, 892, 930, 1035
CviQI GTAC 3 cut(s) 78, 150, 474
DdeI CTNAG 4 cut(s) 102, 322, 503, 587
DinI GGCGCC 1 cut(s) 60
DpnI GATC 6 cut(s) 95, 245, 874, 903, 956, 1091
DpnII GATC 6 cut(s) 93, 243, 872, 901, 954, 1089
DriI GACNNNNNGTC 1 cut(s) 447
Eam1105I GACNNNNNGTC 1 cut(s) 447
Eco147I AGGCCT 1 cut(s) 233
Eco32I GATATC 1 cut(s) 560
Eco47I GGWCC 1 cut(s) 9
EcoRV GATATC 1 cut(s) 560
EcoT22I ATGCAT 1 cut(s) 224
EgeI GGCGCC 1 cut(s) 60
EheI GGCGCC 1 cut(s) 60
Esp3I CGTCTC 1 cut(s) 434
FaeI CATG 8 cut(s) 184, 319, 381, 480, 680, 895, 933, 1038
FaqI GGGAC 2 cut(s) 375, 873
FatI CATG 8 cut(s) 180, 315, 377, 476, 676, 891, 929, 1034
FauI CCCGC 4 cut(s) 462, 695, 724, 904
FauNDI CATATG 1 cut(s) 20
FbaI TGATCA 3 cut(s) 243, 872, 954
FblI GTMKAC 1 cut(s) 1046
Fnu4HI GCNGC 1 cut(s) 692
FokI GGATG 2 cut(s) 998, 1141
Fsp4HI GCNGC 1 cut(s) 692
FspBI CTAG 3 cut(s) 697, 728, 1061
FspI TGCGCA 1 cut(s) 572
GlaI GCGC 5 cut(s) 60, 572, 695, 770, 939
GluI GCNGC 1 cut(s) 692
HaeII RGCGCY 2 cut(s) 62, 941
HaeIII GGCC 3 cut(s) 35, 233, 1161
HapII CCGG 1 cut(s) 941
HgaI GACGC 1 cut(s) 875
HhaI GCGC 5 cut(s) 61, 573, 696, 771, 940
Hin1I GRCGYC 1 cut(s) 59
Hin1II CATG 8 cut(s) 184, 319, 381, 480, 680, 895, 933, 1038
Hin6I GCGC 5 cut(s) 59, 571, 694, 769, 938
HinP1I GCGC 5 cut(s) 59, 571, 694, 769, 938
HinfI GANTC 6 cut(s) 100, 343, 628, 714, 745, 831
HpaII CCGG 1 cut(s) 941
HphI GGTGA 4 cut(s) 103, 253, 499, 663
Hpy166II GTNNAC 6 cut(s) 12, 409, 682, 917, 1047, 1177
Hpy188I TCNGA 5 cut(s) 218, 348, 633, 807, 906
Hpy188III TCNNGA 2 cut(s) 97, 983
Hpy8I GTNNAC 6 cut(s) 12, 409, 682, 917, 1047, 1177
Hpy99I CGWCG 2 cut(s) 453, 839
HpyAV CCTTC 1 cut(s) 187
HpyCH4III ACNGT 3 cut(s) 657, 1044, 1181
HpyCH4IV ACGT 2 cut(s) 411, 443
HpyF3I CTNAG 4 cut(s) 102, 322, 503, 587
HpySE526I ACGT 2 cut(s) 411, 443
Hsp92I GRCGYC 1 cut(s) 59
Hsp92II CATG 8 cut(s) 184, 319, 381, 480, 680, 895, 933, 1038
HspAI GCGC 5 cut(s) 59, 571, 694, 769, 938
KasI GGCGCC 1 cut(s) 58
Ksp22I TGATCA 3 cut(s) 243, 872, 954
KspI CCGCGG 1 cut(s) 900
Kzo9I GATC 6 cut(s) 93, 243, 872, 901, 954, 1089
LmnI GCTCC 1 cut(s) 797
Lsp1109I GCAGC 1 cut(s) 678
LweI GCATC 3 cut(s) 209, 798, 976
MaeI CTAG 3 cut(s) 697, 728, 1061
MaeII ACGT 2 cut(s) 411, 443
MaeIII GTNAC 2 cut(s) 184, 651
MalI GATC 6 cut(s) 95, 245, 874, 903, 956, 1091
MbiI CCGCTC 1 cut(s) 702
MboI GATC 6 cut(s) 93, 243, 872, 901, 954, 1089
MboII GAAGA 5 cut(s) 633, 661, 723, 858, 1050
MhlI GDGCHC 4 cut(s) 269, 411, 684, 1179
MluCI AATT 5 cut(s) 153, 206, 521, 645, 849
Mly113I GGCGCC 1 cut(s) 59
MlyI GAGTC 3 cut(s) 94, 352, 739
MmeI TCCRAC 1 cut(s) 320
MnlI CCTC 6 cut(s) 46, 477, 498, 627, 701, 918
Mph1103I ATGCAT 1 cut(s) 224
MseI TTAA 1 cut(s) 638
MslI CAYNNNNRTG 2 cut(s) 19, 382
MspA1I CMGCKG 2 cut(s) 106, 899
MspI CCGG 1 cut(s) 941
Mva1269I GAATGC 1 cut(s) 462
MvnI CGCG 2 cut(s) 769, 899
NarI GGCGCC 1 cut(s) 59
NdeI CATATG 1 cut(s) 20
NdeII GATC 6 cut(s) 93, 243, 872, 901, 954, 1089
NheI GCTAGC 1 cut(s) 727
NlaIII CATG 8 cut(s) 184, 319, 381, 480, 680, 895, 933, 1038
NlaIV GGNNCC 2 cut(s) 60, 799
NmuCI GTSAC 1 cut(s) 651
NsbI TGCGCA 1 cut(s) 572
NsiI ATGCAT 1 cut(s) 224
NspI RCATGY 2 cut(s) 381, 680
PceI AGGCCT 1 cut(s) 233
PciI ACATGT 1 cut(s) 377
PcsI WCGNNNNNNNCGW 2 cut(s) 457, 1107
PctI GAATGC 1 cut(s) 462
PfeI GAWTC 3 cut(s) 628, 714, 831
PkrI GCNGC 1 cut(s) 693
PleI GAGTC 3 cut(s) 94, 351, 739
PluTI GGCGCC 1 cut(s) 62
PpsI GAGTC 3 cut(s) 94, 351, 739
Ppu21I YACGTR 1 cut(s) 412
PscI ACATGT 1 cut(s) 377
PspN4I GGNNCC 2 cut(s) 60, 799
PspPI GGNCC 2 cut(s) 9, 1159
PsrI GAACNNNNNNTAC 2 cut(s) 650, 682
PstNI CAGNNNCTG 1 cut(s) 910
PvuII CAGCTG 1 cut(s) 106
RsaI GTAC 3 cut(s) 79, 151, 475
RsaNI GTAC 3 cut(s) 78, 150, 474
RseI CAYNNNNRTG 2 cut(s) 19, 382
SacII CCGCGG 1 cut(s) 900
SaqAI TTAA 1 cut(s) 638
SatI GCNGC 1 cut(s) 692
Sau3AI GATC 6 cut(s) 93, 243, 872, 901, 954, 1089
Sau96I GGNCC 2 cut(s) 9, 1159
SchI GAGTC 3 cut(s) 94, 352, 739
SduI GDGCHC 4 cut(s) 269, 411, 684, 1179
SfaNI GCATC 3 cut(s) 209, 798, 976
SfoI GGCGCC 1 cut(s) 60
Sfr303I CCGCGG 1 cut(s) 900
SgrAI CRCCGGYG 1 cut(s) 940
SgrBI CCGCGG 1 cut(s) 900
SinI GGWCC 1 cut(s) 9
SmiMI CAYNNNNRTG 2 cut(s) 19, 382
SmlI CTYRAG 2 cut(s) 268, 327
SmoI CTYRAG 2 cut(s) 268, 327
Sse9I AATT 5 cut(s) 153, 206, 521, 645, 849
SseBI AGGCCT 1 cut(s) 233
SsiI CCGC 6 cut(s) 469, 702, 731, 767, 897, 899
SspDI GGCGCC 1 cut(s) 58
SspI AATATT 2 cut(s) 294, 537
SspMI CTAG 3 cut(s) 697, 728, 1061
StuI AGGCCT 1 cut(s) 233
TaaI ACNGT 3 cut(s) 657, 1044, 1181
TaiI ACGT 2 cut(s) 414, 446
TaqI TCGA 7 cut(s) 38, 157, 289, 422, 748, 837, 1194
TasI AATT 5 cut(s) 153, 206, 521, 645, 849
TatI WGTACW 1 cut(s) 149
TfiI GAWTC 3 cut(s) 628, 714, 831
Tru1I TTAA 1 cut(s) 638
Tru9I TTAA 1 cut(s) 638
TscAI CASTG 2 cut(s) 882, 1184
TseFI GTSAC 1 cut(s) 651
TseI GCWGC 1 cut(s) 691
Tsp45I GTSAC 1 cut(s) 651
TspDTI ATGAA 4 cut(s) 169, 304, 440, 1051
TspRI CASTG 2 cut(s) 882, 1184
VneI GTGCAC 3 cut(s) 407, 680, 1175
VpaK11BI GGWCC 1 cut(s) 9
XapI RAATTY 3 cut(s) 206, 521, 849
XceI RCATGY 2 cut(s) 381, 680
XmiI GTMKAC 1 cut(s) 1046
XspI CTAG 3 cut(s) 697, 728, 1061
Zsp2I ATGCAT 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.