Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0018651

Physical Location & Seq

Genomic Coordinates Reverse (-)

45110514 .. 45112031

Gene Structure 1518 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003165

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGCACATGACGTTGTAGTGATGGTGCTGATCCACGCCACTCTCTCTAACTCGGCTCTCTCCCACATCATCGGCTGCGACACTGCCAGAGAGCTTTGGCTGAAGTTGGAGGAGAATTGCTCATCTCTGTTGAACTTCCACATCATCGGCTCCAACCCTAGAAAGCCTATCGAGCTCGCCCACCCTTCCTCCCCACAACAACCATTCCTCCATTCGCCGCAGCAATCCCAACCCGCCGCCTCCCCCGAAAGCCCCAACCTTTCTCCTAAACTTGACCCGACCCTAGATTTCAGCTCCACGGATGAGAGCAGGAATCCGCTTTTGGTGATCAGGGCCATGATTGCGGTTTGGTTTCTGGAGAGAGTGCCGTTTATGCTGGTGGAGTCGTCTGAGCTGCAGAAGCAGCTCGAGACCGACGCGAAGGCCTCGCCAGAAGAGAAGGTGGGGCTGCGTGAGGCTGCCGCCATTGTTTTCGGGATAGGTCCGAGAGGTAGAGGGATGATAGGAATGCCGAGAGGGATGATTGAGTCTCCAATGCATAGGCCTAATATAGGGCAGGATGATAGGAATGGTGGCTTGGATATGAGATTTCGATTTGGTGCCGATGTAGTGATTGCTCTGCTAACTGGTGCTTGGTTGCAGAAAATAATTTGGGAAGGCAGTACTTGTCTAATCGAAGATCTTCCGCTTGTCGATATCGGCGACAATGTGTTGGACAAGGCAGCCGTTGGAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008174 GO:0008757 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016071 GO:0016422 GO:0016556 GO:0016604 GO:0016607 GO:0016740 GO:0016741 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0034708 GO:0036396 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045293 GO:0046483 GO:0070013 GO:0071704 GO:0080009 GO:0090304 GO:0140098 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MT-A70

Protein Analysis

246

Amino Acids

26.83

Weight (kDa)

5.17

Isoelectric Point (pI)

61.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018651)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000003165
rosa_multiflora	Rmu_sc0000284.1_g000030
rosa_roxburghii	Rroxscaffold_6G00387910
rosa_samantha	Rh1AG022400 Rh2CG255500 Rh2DG023100 Rh3CG251400 Rh6AG285300 Rh7AG388100 Rh7CG174800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	599
AccII	CGCG	1 cut(s)	419
AciI	CCGC	7 cut(s)	218, 234, 237, 317, 344, 462, 686
AclWI	GGATC	1 cut(s)	25
AcuI	CTGAAG	1 cut(s)	122
AfaI	GTAC	1 cut(s)	664
AfiI	CCNNNNNNNGG	1 cut(s)	551
AgsI	TTSAA	1 cut(s)	133
AjuI	GAANNNNNNNTTGG	4 cut(s)	305, 337, 560, 592
AluBI	AGCT	5 cut(s)	94, 175, 294, 394, 406
AluI	AGCT	5 cut(s)	94, 175, 294, 394, 406
Alw21I	GWGCWC	1 cut(s)	177
Alw26I	GTCTC	2 cut(s)	404, 534
AlwI	GGATC	1 cut(s)	25
Ama87I	CYCGRG	1 cut(s)	407
AoxI	GGCC	3 cut(s)	333, 423, 542
ApeKI	GCWGC	7 cut(s)	75, 220, 394, 403, 448, 458, 722
Asp700I	GAANNNNTTC	1 cut(s)	681
AspS9I	GGNCC	2 cut(s)	333, 482
AsuHPI	GGTGA	1 cut(s)	337
AvaI	CYCGRG	1 cut(s)	407
AvaII	GGWCC	1 cut(s)	482
BanI	GGYRCC	1 cut(s)	599
BanII	GRGCYC	1 cut(s)	177
Bbv12I	GWGCWC	1 cut(s)	177
BbvI	GCAGC	7 cut(s)	62, 232, 381, 415, 435, 445, 734
BccI	CCATC	1 cut(s)	16
BceAI	ACGGC	2 cut(s)	352, 710
BclI	TGATCA	1 cut(s)	327
BcoDI	GTCTC	2 cut(s)	404, 534
BfaI	CTAG	2 cut(s)	159, 284
BfmI	CTRYAG	1 cut(s)	395
BglII	AGATCT	1 cut(s)	679
BmcAI	AGTACT	1 cut(s)	664
Bme18I	GGWCC	1 cut(s)	482
BmeT110I	CYCGRG	1 cut(s)	407
BmgT120I	GGNCC	2 cut(s)	333, 482
BmiI	GGNNCC	2 cut(s)	151, 601
BplI	GAGNNNNNCTC	2 cut(s)	104, 136
BpmI	CTGGAG	1 cut(s)	377
BsaI	GGTCTC	1 cut(s)	404
BsaJI	CCNNGG	1 cut(s)	297
BsaXI	ACNNNNNCTCC	4 cut(s)	173, 192, 203, 222
Bsc4I	CCNNNNNNNGG	1 cut(s)	551
Bse1I	ACTGG	1 cut(s)	631
BseDI	CCNNGG	1 cut(s)	297
BseGI	GGATG	4 cut(s)	307, 504, 525, 565
BseLI	CCNNNNNNNGG	1 cut(s)	551
BseMII	CTCAG	1 cut(s)	381
BseNI	ACTGG	1 cut(s)	631
BseRI	GAGGAG	1 cut(s)	125
BseXI	GCAGC	7 cut(s)	62, 232, 381, 415, 435, 445, 734
Bsh1236I	CGCG	1 cut(s)	419
BshFI	GGCC	3 cut(s)	335, 425, 544
BshNI	GGYRCC	1 cut(s)	599
BsiHKAI	GWGCWC	1 cut(s)	177
BsiHKCI	CYCGRG	1 cut(s)	407
BslI	CCNNNNNNNGG	1 cut(s)	551
BsmAI	GTCTC	2 cut(s)	404, 534
BsmI	GAATGC	1 cut(s)	513
BsnI	GGCC	3 cut(s)	335, 425, 544
Bso31I	GGTCTC	1 cut(s)	404
BsoBI	CYCGRG	1 cut(s)	407
Bsp1286I	GDGCHC	1 cut(s)	177
Bsp143I	GATC	3 cut(s)	30, 327, 679
BspACI	CCGC	7 cut(s)	218, 234, 237, 317, 344, 462, 686
BspANI	GGCC	3 cut(s)	335, 425, 544
BspCNI	CTCAG	1 cut(s)	382
BspFNI	CGCG	1 cut(s)	419
BspLI	GGNNCC	2 cut(s)	151, 601
BspMAI	CTGCAG	1 cut(s)	399
BspPI	GGATC	1 cut(s)	25
BspT107I	GGYRCC	1 cut(s)	599
BspTNI	GGTCTC	1 cut(s)	404
BsrI	ACTGG	1 cut(s)	631
BssECI	CCNNGG	1 cut(s)	297
BssMI	GATC	3 cut(s)	30, 327, 679
Bst6I	CTCTTC	1 cut(s)	429
BstC8I	GCNNGC	1 cut(s)	177
BstDEI	CTNAG	1 cut(s)	390
BstDSI	CCRYGG	1 cut(s)	297
BstENI	CCTNNNNNAGG	1 cut(s)	549
BstF5I	GGATG	4 cut(s)	307, 504, 525, 565
BstFNI	CGCG	1 cut(s)	419
BstKTI	GATC	3 cut(s)	33, 330, 682
BstMAI	GTCTC	2 cut(s)	404, 534
BstMBI	GATC	3 cut(s)	30, 327, 679
BstMWI	GCNNNNNNNGC	5 cut(s)	172, 341, 373, 400, 403
BstSFI	CTRYAG	1 cut(s)	395
BstUI	CGCG	1 cut(s)	419
BstV1I	GCAGC	7 cut(s)	62, 232, 381, 415, 435, 445, 734
BstX2I	RGATCY	1 cut(s)	679
BstYI	RGATCY	1 cut(s)	679
BsuRI	GGCC	3 cut(s)	335, 425, 544
BtgI	CCRYGG	1 cut(s)	297
BtsCI	GGATG	4 cut(s)	307, 504, 525, 565
BtsI	GCAGTG	1 cut(s)	81
BtsIMutI	CAGTG	1 cut(s)	81
Cac8I	GCNNGC	1 cut(s)	177
Cfr13I	GGNCC	2 cut(s)	333, 482
CseI	GACGC	1 cut(s)	425
Csp6I	GTAC	1 cut(s)	663
CviAII	CATG	2 cut(s)	8, 337
CviQI	GTAC	1 cut(s)	663
DdeI	CTNAG	1 cut(s)	390
DpnI	GATC	3 cut(s)	32, 329, 681
DpnII	GATC	3 cut(s)	30, 327, 679
Eam1104I	CTCTTC	1 cut(s)	429
EarI	CTCTTC	1 cut(s)	429
Ecl136II	GAGCTC	1 cut(s)	175
Eco147I	AGGCCT	2 cut(s)	425, 544
Eco24I	GRGCYC	1 cut(s)	177
Eco31I	GGTCTC	1 cut(s)	404
Eco32I	GATATC	1 cut(s)	697
Eco47I	GGWCC	1 cut(s)	482
Eco53kI	GAGCTC	1 cut(s)	175
Eco57I	CTGAAG	1 cut(s)	122
Eco88I	CYCGRG	1 cut(s)	407
EcoICRI	GAGCTC	1 cut(s)	175
EcoNI	CCTNNNNNAGG	1 cut(s)	549
EcoRV	GATATC	1 cut(s)	697
EcoT22I	ATGCAT	1 cut(s)	540
EcoT38I	GRGCYC	1 cut(s)	177
FaeI	CATG	2 cut(s)	11, 340
FaiI	YATR	6 cut(s)	9, 338, 374, 540, 551, 584
FatI	CATG	2 cut(s)	7, 336
FauI	CCCGC	1 cut(s)	241
FbaI	TGATCA	1 cut(s)	327
FokI	GGATG	4 cut(s)	314, 511, 532, 572
FriOI	GRGCYC	1 cut(s)	177
FspBI	CTAG	2 cut(s)	159, 284
GsuI	CTGGAG	1 cut(s)	377
HaeIII	GGCC	3 cut(s)	335, 425, 544
HgaI	GACGC	1 cut(s)	425
Hin1II	CATG	2 cut(s)	11, 340
HinfI	GANTC	3 cut(s)	313, 383, 527
HphI	GGTGA	1 cut(s)	337
Hpy188I	TCNGA	2 cut(s)	391, 486
Hpy188III	TCNNGA	3 cut(s)	356, 409, 475
Hpy99I	CGWCG	1 cut(s)	419
HpyAV	CCTTC	4 cut(s)	195, 415, 433, 650
HpyCH4IV	ACGT	1 cut(s)	12
HpyCH4V	TGCA	3 cut(s)	397, 538, 640
HpyF10VI	GCNNNNNNNGC	5 cut(s)	172, 341, 373, 400, 403
HpyF3I	CTNAG	1 cut(s)	390
HpySE526I	ACGT	1 cut(s)	12
Hsp92II	CATG	2 cut(s)	11, 340
Ksp22I	TGATCA	1 cut(s)	327
Kzo9I	GATC	3 cut(s)	30, 327, 679
LmnI	GCTCC	2 cut(s)	155, 299
LpnPI	CCDG	8 cut(s)	100, 295, 316, 341, 362, 444, 542, 612
Lsp1109I	GCAGC	7 cut(s)	62, 232, 381, 415, 435, 445, 734
MaeI	CTAG	2 cut(s)	159, 284
MaeII	ACGT	1 cut(s)	12
MalI	GATC	3 cut(s)	32, 329, 681
MboI	GATC	3 cut(s)	30, 327, 679
MboII	GAAGA	3 cut(s)	446, 674, 689
MflI	RGATCY	1 cut(s)	679
MhlI	GDGCHC	1 cut(s)	177
MluCI	AATT	2 cut(s)	115, 648
MlyI	GAGTC	2 cut(s)	392, 536
MmeI	TCCRAC	4 cut(s)	87, 177, 693, 709
MnlI	CCTC	9 cut(s)	103, 199, 218, 250, 436, 448, 482, 488, 509
Mph1103I	ATGCAT	1 cut(s)	540
MroXI	GAANNNNTTC	1 cut(s)	681
Mva1269I	GAATGC	1 cut(s)	513
MvnI	CGCG	1 cut(s)	419
MwoI	GCNNNNNNNGC	5 cut(s)	172, 341, 373, 400, 403
NdeII	GATC	3 cut(s)	30, 327, 679
NlaIII	CATG	2 cut(s)	11, 340
NlaIV	GGNNCC	2 cut(s)	151, 601
NmeAIII	GCCGAG	2 cut(s)	32, 537
NsiI	ATGCAT	1 cut(s)	540
PaeR7I	CTCGAG	1 cut(s)	407
PceI	AGGCCT	2 cut(s)	425, 544
PcsI	WCGNNNNNNNCGW	1 cut(s)	699
PctI	GAATGC	1 cut(s)	513
PdmI	GAANNNNTTC	1 cut(s)	681
PfeI	GAWTC	1 cut(s)	313
PleI	GAGTC	2 cut(s)	391, 535
PpsI	GAGTC	2 cut(s)	391, 535
Psp124BI	GAGCTC	1 cut(s)	177
PspN4I	GGNNCC	2 cut(s)	151, 601
PspPI	GGNCC	2 cut(s)	333, 482
PstI	CTGCAG	1 cut(s)	399
PsuI	RGATCY	1 cut(s)	679
RsaI	GTAC	1 cut(s)	664
RsaNI	GTAC	1 cut(s)	663
SacI	GAGCTC	1 cut(s)	177
Sau3AI	GATC	3 cut(s)	30, 327, 679
Sau96I	GGNCC	2 cut(s)	333, 482
ScaI	AGTACT	1 cut(s)	664
SchI	GAGTC	2 cut(s)	392, 536
SduI	GDGCHC	1 cut(s)	177
SfcI	CTRYAG	1 cut(s)	395
Sfr274I	CTCGAG	1 cut(s)	407
SinI	GGWCC	1 cut(s)	482
SlaI	CTCGAG	1 cut(s)	407
SmlI	CTYRAG	1 cut(s)	407
SmoI	CTYRAG	1 cut(s)	407
Sse9I	AATT	2 cut(s)	115, 648
SseBI	AGGCCT	2 cut(s)	425, 544
SsiI	CCGC	7 cut(s)	218, 234, 237, 317, 344, 462, 686
SspMI	CTAG	2 cut(s)	159, 284
SstI	GAGCTC	1 cut(s)	177
StuI	AGGCCT	2 cut(s)	425, 544
TaiI	ACGT	1 cut(s)	15
TaqI	TCGA	5 cut(s)	171, 408, 592, 675, 693
TaqII	GACCGA	1 cut(s)	428
TasI	AATT	2 cut(s)	115, 648
TatI	WGTACW	1 cut(s)	662
TauI	GCSGC	3 cut(s)	220, 239, 464
TfiI	GAWTC	1 cut(s)	313
TscAI	CASTG	1 cut(s)	88
TseI	GCWGC	7 cut(s)	75, 220, 394, 403, 448, 458, 722
TspGWI	ACGGA	1 cut(s)	314
TspRI	CASTG	1 cut(s)	88
VpaK11BI	GGWCC	1 cut(s)	482
XagI	CCTNNNNNAGG	1 cut(s)	549
XhoI	CTCGAG	1 cut(s)	407
XmnI	GAANNNNTTC	1 cut(s)	681
XspI	CTAG	2 cut(s)	159, 284
ZrmI	AGTACT	1 cut(s)	664
Zsp2I	ATGCAT	1 cut(s)	540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.