Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0018651

Physical Location & Seq

Genomic Coordinates Reverse (-)

4128980 .. 4129324

Gene Structure 345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG022400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGACGAGAGCGGGAACCCGCTTTTGGTGTTCCAGGCCATGATTGTGGTTCTGTTTCTGGAGAGAGTGCCGTTTATGCTTGTGGAGTCATCGGAGCTGCAGAAGCAGCTCGAGACCGATGCAAGCTACGGGAGGTGGGCGAGAGAACGGGGGGATTCTAGTAGTGGAGATGGCATGGATGGTGGGAATAACAAAGGAGGAGGGTTTGTGGGCAGAGGTGGGCCGTGGGTGGTTGGGCCGGAGCCGTACATGGGAAGGTTGCCGCCATTGTTCCAGAGGATAGGTCCGAGAGGTAGAGGAATGATAGGAATGCCGAGAGGGGATGATTGGGTCTCCAATGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008174 GO:0008757 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016071 GO:0016422 GO:0016556 GO:0016604 GO:0016607 GO:0016740 GO:0016741 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0034708 GO:0036396 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045293 GO:0046483 GO:0070013 GO:0071704 GO:0080009 GO:0090304 GO:0140098 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MT-A70

Protein Analysis

114

Amino Acids

12.4

Weight (kDa)

5.07

Isoelectric Point (pI)

42.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018651)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000003165
rosa_multiflora	Rmu_sc0000284.1_g000030
rosa_roxburghii	Rroxscaffold_6G00387910
rosa_samantha	Rh1AG022400 Rh2CG255500 Rh2DG023100 Rh3CG251400 Rh6AG285300 Rh7AG388100 Rh7CG174800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	12
AciI	CCGC	3 cut(s)	12, 20, 263
AfaI	GTAC	1 cut(s)	248
AfiI	CCNNNNNNNGG	2 cut(s)	25, 251
AjnI	CCWGG	1 cut(s)	33
AjuI	GAANNNNNNNTTGG	2 cut(s)	8, 40
AluBI	AGCT	3 cut(s)	97, 109, 126
AluI	AGCT	3 cut(s)	97, 109, 126
Alw26I	GTCTC	2 cut(s)	107, 337
Ama87I	CYCGRG	1 cut(s)	110
AoxI	GGCC	3 cut(s)	36, 221, 236
ApeKI	GCWGC	2 cut(s)	97, 106
AspS9I	GGNCC	3 cut(s)	221, 236, 284
AvaI	CYCGRG	1 cut(s)	110
AvaII	GGWCC	1 cut(s)	284
BbvI	GCAGC	2 cut(s)	84, 118
BccI	CCATC	2 cut(s)	164, 173
BceAI	ACGGC	3 cut(s)	55, 208, 229
BcgI	CGANNNNNNTGC	2 cut(s)	101, 135
BciT130I	CCWGG	1 cut(s)	35
BcoDI	GTCTC	2 cut(s)	107, 337
BfaI	CTAG	1 cut(s)	159
BfmI	CTRYAG	1 cut(s)	98
BisI	GCNGC	3 cut(s)	98, 107, 263
BlsI	GCNGC	3 cut(s)	99, 108, 264
Bme1390I	CCNGG	1 cut(s)	35
Bme18I	GGWCC	1 cut(s)	284
BmeT110I	CYCGRG	1 cut(s)	110
BmgT120I	GGNCC	3 cut(s)	221, 236, 284
BmiI	GGNNCC	2 cut(s)	17, 243
BmrFI	CCNGG	1 cut(s)	35
BmsI	GCATC	1 cut(s)	109
BpmI	CTGGAG	1 cut(s)	80
BsaI	GGTCTC	2 cut(s)	107, 337
BsaJI	CCNNGG	1 cut(s)	224
BsaXI	ACNNNNNCTCC	2 cut(s)	192, 222
Bsc4I	CCNNNNNNNGG	2 cut(s)	25, 251
BseBI	CCWGG	1 cut(s)	35
BseDI	CCNNGG	1 cut(s)	224
BseGI	GGATG	2 cut(s)	184, 328
BseLI	CCNNNNNNNGG	2 cut(s)	25, 251
BseRI	GAGGAG	1 cut(s)	213
BseXI	GCAGC	2 cut(s)	84, 118
BshFI	GGCC	3 cut(s)	38, 223, 238
BsiHKCI	CYCGRG	1 cut(s)	110
BsiSI	CCGG	1 cut(s)	239
BslI	CCNNNNNNNGG	2 cut(s)	25, 251
BsmAI	GTCTC	2 cut(s)	107, 337
BsmI	GAATGC	1 cut(s)	315
BsnI	GGCC	3 cut(s)	38, 223, 238
Bso31I	GGTCTC	2 cut(s)	107, 337
BsoBI	CYCGRG	1 cut(s)	110
BspACI	CCGC	3 cut(s)	12, 20, 263
BspANI	GGCC	3 cut(s)	38, 223, 238
BspLI	GGNNCC	2 cut(s)	17, 243
BspMAI	CTGCAG	1 cut(s)	102
BspTNI	GGTCTC	2 cut(s)	107, 337
BsrBI	CCGCTC	1 cut(s)	12
BssECI	CCNNGG	1 cut(s)	224
Bst2UI	CCWGG	1 cut(s)	35
BstC8I	GCNNGC	1 cut(s)	124
BstDSI	CCRYGG	1 cut(s)	224
BstF5I	GGATG	2 cut(s)	184, 328
BstMAI	GTCTC	2 cut(s)	107, 337
BstMWI	GCNNNNNNNGC	3 cut(s)	76, 103, 106
BstNI	CCWGG	1 cut(s)	35
BstSCI	CCNGG	1 cut(s)	33
BstSFI	CTRYAG	1 cut(s)	98
BstV1I	GCAGC	2 cut(s)	84, 118
BstXI	CCANNNNNNTGG	1 cut(s)	46
BsuRI	GGCC	3 cut(s)	38, 223, 238
BtgI	CCRYGG	1 cut(s)	224
BtsCI	GGATG	2 cut(s)	184, 328
Cac8I	GCNNGC	1 cut(s)	124
Cfr13I	GGNCC	3 cut(s)	221, 236, 284
Csp6I	GTAC	1 cut(s)	247
CviAII	CATG	3 cut(s)	40, 175, 250
CviJI	RGCY	7 cut(s)	38, 97, 109, 126, 223, 238, 244
CviKI_1	RGCY	7 cut(s)	38, 97, 109, 126, 223, 238, 244
CviQI	GTAC	1 cut(s)	247
Eco31I	GGTCTC	2 cut(s)	107, 337
Eco47I	GGWCC	1 cut(s)	284
Eco88I	CYCGRG	1 cut(s)	110
EcoRII	CCWGG	1 cut(s)	33
EcoT22I	ATGCAT	1 cut(s)	343
FaeI	CATG	3 cut(s)	43, 178, 253
FaiI	YATR	5 cut(s)	41, 77, 176, 251, 343
FatI	CATG	3 cut(s)	39, 174, 249
FauI	CCCGC	2 cut(s)	5, 27
Fnu4HI	GCNGC	3 cut(s)	98, 107, 263
FokI	GGATG	2 cut(s)	191, 335
Fsp4HI	GCNGC	3 cut(s)	98, 107, 263
FspBI	CTAG	1 cut(s)	159
GluI	GCNGC	3 cut(s)	98, 107, 263
GsuI	CTGGAG	1 cut(s)	80
HaeIII	GGCC	3 cut(s)	38, 223, 238
HapII	CCGG	1 cut(s)	239
Hin1II	CATG	3 cut(s)	43, 178, 253
HinfI	GANTC	2 cut(s)	86, 155
HpaII	CCGG	1 cut(s)	239
Hpy188I	TCNGA	2 cut(s)	94, 288
Hpy188III	TCNNGA	3 cut(s)	59, 112, 274
HpyAV	CCTTC	1 cut(s)	249
HpyCH4V	TGCA	3 cut(s)	100, 122, 341
HpyF10VI	GCNNNNNNNGC	3 cut(s)	76, 103, 106
Hsp92II	CATG	3 cut(s)	43, 178, 253
LmnI	GCTCC	2 cut(s)	94, 241
LpnPI	CCDG	5 cut(s)	20, 44, 47, 252, 287
Lsp1109I	GCAGC	2 cut(s)	84, 118
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	1 cut(s)	159
MbiI	CCGCTC	1 cut(s)	12
MlyI	GAGTC	1 cut(s)	95
MnlI	CCTC	8 cut(s)	126, 191, 194, 209, 270, 284, 290, 311
Mph1103I	ATGCAT	1 cut(s)	343
MslI	CAYNNNNRTG	1 cut(s)	44
MspI	CCGG	1 cut(s)	239
MspR9I	CCNGG	1 cut(s)	35
Mva1269I	GAATGC	1 cut(s)	315
MvaI	CCWGG	1 cut(s)	35
MwoI	GCNNNNNNNGC	3 cut(s)	76, 103, 106
NlaIII	CATG	3 cut(s)	43, 178, 253
NlaIV	GGNNCC	2 cut(s)	17, 243
NmeAIII	GCCGAG	1 cut(s)	339
NsiI	ATGCAT	1 cut(s)	343
PaeR7I	CTCGAG	1 cut(s)	110
PctI	GAATGC	1 cut(s)	315
PfeI	GAWTC	1 cut(s)	155
PkrI	GCNGC	3 cut(s)	99, 108, 264
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
Psp6I	CCWGG	1 cut(s)	33
PspGI	CCWGG	1 cut(s)	33
PspN4I	GGNNCC	2 cut(s)	17, 243
PspPI	GGNCC	3 cut(s)	221, 236, 284
PstI	CTGCAG	1 cut(s)	102
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
RseI	CAYNNNNRTG	1 cut(s)	44
SatI	GCNGC	3 cut(s)	98, 107, 263
Sau96I	GGNCC	3 cut(s)	221, 236, 284
SchI	GAGTC	1 cut(s)	95
ScrFI	CCNGG	1 cut(s)	35
SetI	ASST	8 cut(s)	99, 111, 128, 137, 220, 260, 286, 295
SfaNI	GCATC	1 cut(s)	109
SfcI	CTRYAG	1 cut(s)	98
Sfr274I	CTCGAG	1 cut(s)	110
SinI	GGWCC	1 cut(s)	284
SlaI	CTCGAG	1 cut(s)	110
SmiMI	CAYNNNNRTG	1 cut(s)	44
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
SsiI	CCGC	3 cut(s)	12, 20, 263
SspMI	CTAG	1 cut(s)	159
StyD4I	CCNGG	1 cut(s)	33
TaqI	TCGA	1 cut(s)	111
TaqII	GACCGA	1 cut(s)	131
TauI	GCSGC	1 cut(s)	265
TfiI	GAWTC	1 cut(s)	155
TseI	GCWGC	2 cut(s)	97, 106
VpaK11BI	GGWCC	1 cut(s)	284
XhoI	CTCGAG	1 cut(s)	110
XspI	CTAG	1 cut(s)	159
Zsp2I	ATGCAT	1 cut(s)	343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.