Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0018651

Physical Location & Seq

Genomic Coordinates Reverse (-)

27223212 .. 27223430

Gene Structure 219 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG255500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGGATAAGAGCGGGAACCCACTATCAATGATCCTGGCCATCATTGTGGTTTGGTTTATGGAGAGAGTGTCGTTTATGCTGGTGGAGTCGTCGGAGCTGCTGAAGCAGCTCAAGACCGACGTGAAGGCCTCGTCGGAGGCTAAGGCGGCGTTGCGCGAGGTGGGCAGAGAGAATGGGGGGATTCTGGCGGTGGAGATGGCGCTGAGGTCGATGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008174 GO:0008757 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016071 GO:0016422 GO:0016556 GO:0016604 GO:0016607 GO:0016740 GO:0016741 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0034708 GO:0036396 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045293 GO:0046483 GO:0070013 GO:0071704 GO:0080009 GO:0090304 GO:0140098 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MT-A70

Protein Analysis

72

Amino Acids

7.9

Weight (kDa)

6.2

Isoelectric Point (pI)

37.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018651)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000003165
rosa_multiflora	Rmu_sc0000284.1_g000030
rosa_roxburghii	Rroxscaffold_6G00387910
rosa_samantha	Rh1AG022400 Rh2CG255500 Rh2DG023100 Rh3CG251400 Rh6AG285300 Rh7AG388100 Rh7CG174800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	12
AccII	CGCG	1 cut(s)	156
AciI	CCGC	3 cut(s)	12, 146, 188
AclWI	GGATC	1 cut(s)	25
AcoI	YGGCCR	1 cut(s)	36
AcuI	CTGAAG	1 cut(s)	122
AjiI	CACGTC	1 cut(s)	121
AjnI	CCWGG	1 cut(s)	33
AluBI	AGCT	2 cut(s)	97, 109
AluI	AGCT	2 cut(s)	97, 109
AlwI	GGATC	1 cut(s)	25
AoxI	GGCC	2 cut(s)	36, 126
ApeKI	GCWGC	2 cut(s)	97, 106
AspLEI	GCGC	2 cut(s)	156, 202
BalI	TGGCCA	1 cut(s)	38
BbvCI	CCTCAGC	1 cut(s)	203
BbvI	GCAGC	2 cut(s)	84, 118
BccI	CCATC	3 cut(s)	47, 190, 205
BciT130I	CCWGG	1 cut(s)	35
BfoI	RGCGCY	1 cut(s)	203
BisI	GCNGC	3 cut(s)	98, 107, 147
BlsI	GCNGC	3 cut(s)	99, 108, 148
Bme1390I	CCNGG	1 cut(s)	35
BmgBI	CACGTC	1 cut(s)	121
BmiI	GGNNCC	1 cut(s)	17
BmrFI	CCNGG	1 cut(s)	35
Bpu10I	CCTNAGC	2 cut(s)	141, 203
BpuEI	CTTGAG	1 cut(s)	95
BsaXI	ACNNNNNCTCC	2 cut(s)	53, 83
BseBI	CCWGG	1 cut(s)	35
BseMII	CTCAG	1 cut(s)	194
BseXI	GCAGC	2 cut(s)	84, 118
Bsh1236I	CGCG	1 cut(s)	156
BshFI	GGCC	2 cut(s)	38, 128
BsnI	GGCC	2 cut(s)	38, 128
Bsp143I	GATC	1 cut(s)	30
BspACI	CCGC	3 cut(s)	12, 146, 188
BspANI	GGCC	2 cut(s)	38, 128
BspCNI	CTCAG	1 cut(s)	195
BspFNI	CGCG	1 cut(s)	156
BspLI	GGNNCC	1 cut(s)	17
BspPI	GGATC	1 cut(s)	25
BsrBI	CCGCTC	1 cut(s)	12
BssMI	GATC	1 cut(s)	30
Bst2UI	CCWGG	1 cut(s)	35
BstDEI	CTNAG	2 cut(s)	141, 203
BstFNI	CGCG	1 cut(s)	156
BstH2I	RGCGCY	1 cut(s)	203
BstHHI	GCGC	2 cut(s)	156, 202
BstKTI	GATC	1 cut(s)	33
BstMBI	GATC	1 cut(s)	30
BstMWI	GCNNNNNNNGC	4 cut(s)	103, 106, 146, 162
BstNI	CCWGG	1 cut(s)	35
BstSCI	CCNGG	1 cut(s)	33
BstUI	CGCG	1 cut(s)	156
BstV1I	GCAGC	2 cut(s)	84, 118
BstXI	CCANNNNNNTGG	1 cut(s)	46
BsuRI	GGCC	2 cut(s)	38, 128
BtrI	CACGTC	1 cut(s)	121
CfoI	GCGC	2 cut(s)	156, 202
CviJI	RGCY	5 cut(s)	38, 97, 109, 128, 140
CviKI_1	RGCY	5 cut(s)	38, 97, 109, 128, 140
DdeI	CTNAG	2 cut(s)	141, 203
DpnI	GATC	1 cut(s)	32
DpnII	GATC	1 cut(s)	30
EaeI	YGGCCR	1 cut(s)	36
Eco147I	AGGCCT	1 cut(s)	128
Eco57I	CTGAAG	1 cut(s)	122
EcoRII	CCWGG	1 cut(s)	33
FaiI	YATR	3 cut(s)	59, 77, 217
FauI	CCCGC	1 cut(s)	5
Fnu4HI	GCNGC	3 cut(s)	98, 107, 147
Fsp4HI	GCNGC	3 cut(s)	98, 107, 147
GlaI	GCGC	2 cut(s)	155, 201
GluI	GCNGC	3 cut(s)	98, 107, 147
HaeII	RGCGCY	1 cut(s)	203
HaeIII	GGCC	2 cut(s)	38, 128
HhaI	GCGC	2 cut(s)	156, 202
Hin6I	GCGC	2 cut(s)	154, 200
HinP1I	GCGC	2 cut(s)	154, 200
HinfI	GANTC	2 cut(s)	86, 181
Hpy188I	TCNGA	2 cut(s)	94, 136
Hpy188III	TCNNGA	1 cut(s)	112
Hpy99I	CGWCG	3 cut(s)	94, 122, 136
HpyAV	CCTTC	1 cut(s)	118
HpyCH4IV	ACGT	1 cut(s)	120
HpyF10VI	GCNNNNNNNGC	4 cut(s)	103, 106, 146, 162
HpyF3I	CTNAG	2 cut(s)	141, 203
HpySE526I	ACGT	1 cut(s)	120
HspAI	GCGC	2 cut(s)	154, 200
Kzo9I	GATC	1 cut(s)	30
LmnI	GCTCC	1 cut(s)	94
LpnPI	CCDG	4 cut(s)	20, 47, 65, 170
Lsp1109I	GCAGC	2 cut(s)	84, 118
MaeII	ACGT	1 cut(s)	120
MalI	GATC	1 cut(s)	32
MbiI	CCGCTC	1 cut(s)	12
MboI	GATC	1 cut(s)	30
MlsI	TGGCCA	1 cut(s)	38
MluNI	TGGCCA	1 cut(s)	38
MlyI	GAGTC	1 cut(s)	95
MmeI	TCCRAC	2 cut(s)	72, 114
MnlI	CCTC	4 cut(s)	130, 139, 151, 198
Mox20I	TGGCCA	1 cut(s)	38
MscI	TGGCCA	1 cut(s)	38
MslI	CAYNNNNRTG	1 cut(s)	44
Msp20I	TGGCCA	1 cut(s)	38
MspR9I	CCNGG	1 cut(s)	35
MvaI	CCWGG	1 cut(s)	35
MvnI	CGCG	1 cut(s)	156
MwoI	GCNNNNNNNGC	4 cut(s)	103, 106, 146, 162
NdeII	GATC	1 cut(s)	30
NlaIV	GGNNCC	1 cut(s)	17
PceI	AGGCCT	1 cut(s)	128
PfeI	GAWTC	1 cut(s)	181
PkrI	GCNGC	3 cut(s)	99, 108, 148
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
Psp6I	CCWGG	1 cut(s)	33
PspGI	CCWGG	1 cut(s)	33
PspN4I	GGNNCC	1 cut(s)	17
RseI	CAYNNNNRTG	1 cut(s)	44
SatI	GCNGC	3 cut(s)	98, 107, 147
Sau3AI	GATC	1 cut(s)	30
SchI	GAGTC	1 cut(s)	95
ScrFI	CCNGG	1 cut(s)	35
SetI	ASST	5 cut(s)	99, 111, 123, 162, 209
SmiMI	CAYNNNNRTG	1 cut(s)	44
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
SseBI	AGGCCT	1 cut(s)	128
SsiI	CCGC	3 cut(s)	12, 146, 188
StuI	AGGCCT	1 cut(s)	128
StyD4I	CCNGG	1 cut(s)	33
TaiI	ACGT	1 cut(s)	123
TaqI	TCGA	1 cut(s)	209
TaqII	GACCGA	1 cut(s)	131
TauI	GCSGC	1 cut(s)	149
TfiI	GAWTC	1 cut(s)	181
TseI	GCWGC	2 cut(s)	97, 106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.