Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0018651

Physical Location & Seq

Genomic Coordinates Reverse (-)

24446409 .. 24447722

Gene Structure 1314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG251400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGACGAGAGCGGGAACCCGCTTTCTGTGATCCGGGCCATGATTACGGTTCGGTTTCTGGAGAGAGTGCGGTTAATGCTGGTAGAGTTGTCAGAGCTGCTGAAGCAGCTTGAGACCGAAGCGAAGGCCTCGCCGGAGGTGTATGCTGTGCTGCACCAGGTGGGCAGAGAGAACGGGGGGATTCTGGCCGTGTTGATGGCGTTGAGGTCAATGGCGGAGGAGAACAGTGGCGTTATCTTCCTCCACCACATCCTCTTCCCAGACTATATCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008174 GO:0008757 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016071 GO:0016422 GO:0016556 GO:0016604 GO:0016607 GO:0016740 GO:0016741 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0034708 GO:0036396 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045293 GO:0046483 GO:0070013 GO:0071704 GO:0080009 GO:0090304 GO:0140098 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MT-A70

Protein Analysis

91

Amino Acids

10.27

Weight (kDa)

5.25

Isoelectric Point (pI)

45.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018651)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000003165
rosa_multiflora	Rmu_sc0000284.1_g000030
rosa_roxburghii	Rroxscaffold_6G00387910
rosa_samantha	Rh1AG022400 Rh2CG255500 Rh2DG023100 Rh3CG251400 Rh6AG285300 Rh7AG388100 Rh7CG174800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	12
AciI	CCGC	4 cut(s)	12, 20, 70, 215
AclWI	GGATC	1 cut(s)	25
AcoI	YGGCCR	1 cut(s)	186
AcuI	CTGAAG	1 cut(s)	122
AdeI	CACNNNGTG	1 cut(s)	160
AjnI	CCWGG	1 cut(s)	156
AluBI	AGCT	2 cut(s)	97, 109
AluI	AGCT	2 cut(s)	97, 109
Alw26I	GTCTC	1 cut(s)	107
AlwI	GGATC	1 cut(s)	25
AoxI	GGCC	3 cut(s)	36, 126, 186
ApeKI	GCWGC	3 cut(s)	97, 106, 151
AspS9I	GGNCC	1 cut(s)	36
AsuC2I	CCSGG	1 cut(s)	35
BbvI	GCAGC	3 cut(s)	84, 118, 138
BccI	CCATC	1 cut(s)	190
BceAI	ACGGC	1 cut(s)	173
BciT130I	CCWGG	1 cut(s)	158
BcnI	CCSGG	1 cut(s)	35
BcoDI	GTCTC	1 cut(s)	107
BisI	GCNGC	3 cut(s)	98, 107, 152
BlsI	GCNGC	3 cut(s)	99, 108, 153
Bme1390I	CCNGG	2 cut(s)	35, 158
BmgT120I	GGNCC	1 cut(s)	36
BmiI	GGNNCC	1 cut(s)	17
BmrFI	CCNGG	2 cut(s)	35, 158
BpmI	CTGGAG	1 cut(s)	80
BpuEI	CTTGAG	1 cut(s)	131
BpuMI	CCSGG	1 cut(s)	35
BsaI	GGTCTC	1 cut(s)	107
BseBI	CCWGG	1 cut(s)	158
BseGI	GGATG	1 cut(s)	249
BseRI	GAGGAG	1 cut(s)	233
BseXI	GCAGC	3 cut(s)	84, 118, 138
BsgI	GTGCAG	1 cut(s)	137
BshFI	GGCC	3 cut(s)	38, 128, 188
BsiSI	CCGG	2 cut(s)	34, 134
BsmAI	GTCTC	1 cut(s)	107
BsnI	GGCC	3 cut(s)	38, 128, 188
Bso31I	GGTCTC	1 cut(s)	107
Bsp143I	GATC	1 cut(s)	30
BspACI	CCGC	4 cut(s)	12, 20, 70, 215
BspANI	GGCC	3 cut(s)	38, 128, 188
BspLI	GGNNCC	1 cut(s)	17
BspPI	GGATC	1 cut(s)	25
BspTNI	GGTCTC	1 cut(s)	107
BsrBI	CCGCTC	1 cut(s)	12
BssMI	GATC	1 cut(s)	30
Bst2UI	CCWGG	1 cut(s)	158
Bst4CI	ACNGT	2 cut(s)	49, 227
Bst6I	CTCTTC	1 cut(s)	260
BstF5I	GGATG	1 cut(s)	249
BstKTI	GATC	1 cut(s)	33
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	1 cut(s)	30
BstMWI	GCNNNNNNNGC	3 cut(s)	76, 103, 106
BstNI	CCWGG	1 cut(s)	158
BstSCI	CCNGG	2 cut(s)	33, 156
BstV1I	GCAGC	3 cut(s)	84, 118, 138
BsuRI	GGCC	3 cut(s)	38, 128, 188
BtsCI	GGATG	1 cut(s)	249
BtsIMutI	CAGTG	1 cut(s)	232
Cfr13I	GGNCC	1 cut(s)	36
CsiI	ACCWGGT	1 cut(s)	156
CviAII	CATG	1 cut(s)	40
CviJI	RGCY	5 cut(s)	38, 97, 109, 128, 188
CviKI_1	RGCY	5 cut(s)	38, 97, 109, 128, 188
DpnI	GATC	1 cut(s)	32
DpnII	GATC	1 cut(s)	30
DraIII	CACNNNGTG	1 cut(s)	160
EaeI	YGGCCR	1 cut(s)	186
Eam1104I	CTCTTC	1 cut(s)	260
EarI	CTCTTC	1 cut(s)	260
EciI	GGCGGA	1 cut(s)	230
Eco147I	AGGCCT	1 cut(s)	128
Eco31I	GGTCTC	1 cut(s)	107
Eco57I	CTGAAG	1 cut(s)	122
EcoRII	CCWGG	1 cut(s)	156
FaeI	CATG	1 cut(s)	43
FaiI	YATR	3 cut(s)	41, 144, 267
FatI	CATG	1 cut(s)	39
FauI	CCCGC	2 cut(s)	5, 27
Fnu4HI	GCNGC	3 cut(s)	98, 107, 152
FokI	GGATG	1 cut(s)	236
Fsp4HI	GCNGC	3 cut(s)	98, 107, 152
GluI	GCNGC	3 cut(s)	98, 107, 152
GsuI	CTGGAG	1 cut(s)	80
HaeIII	GGCC	3 cut(s)	38, 128, 188
HapII	CCGG	2 cut(s)	34, 134
Hin1II	CATG	1 cut(s)	43
HinfI	GANTC	1 cut(s)	181
HpaII	CCGG	2 cut(s)	34, 134
Hpy188I	TCNGA	1 cut(s)	94
Hpy188III	TCNNGA	1 cut(s)	59
HpyAV	CCTTC	1 cut(s)	118
HpyCH4III	ACNGT	2 cut(s)	49, 227
HpyCH4V	TGCA	1 cut(s)	154
HpyF10VI	GCNNNNNNNGC	3 cut(s)	76, 103, 106
Hsp92II	CATG	1 cut(s)	43
Kzo9I	GATC	1 cut(s)	30
LpnPI	CCDG	7 cut(s)	44, 47, 65, 143, 147, 170, 170
Lsp1109I	GCAGC	3 cut(s)	84, 118, 138
MabI	ACCWGGT	1 cut(s)	156
MalI	GATC	1 cut(s)	32
MbiI	CCGCTC	1 cut(s)	12
MboI	GATC	1 cut(s)	30
MboII	GAAGA	3 cut(s)	229, 247, 262
MnlI	CCTC	6 cut(s)	130, 139, 198, 211, 251, 263
MseI	TTAA	1 cut(s)	74
MspI	CCGG	2 cut(s)	34, 134
MspR9I	CCNGG	2 cut(s)	35, 158
MvaI	CCWGG	1 cut(s)	158
MwoI	GCNNNNNNNGC	3 cut(s)	76, 103, 106
NciI	CCSGG	1 cut(s)	35
NdeII	GATC	1 cut(s)	30
NlaIII	CATG	1 cut(s)	43
NlaIV	GGNNCC	1 cut(s)	17
PceI	AGGCCT	1 cut(s)	128
PfeI	GAWTC	1 cut(s)	181
PkrI	GCNGC	3 cut(s)	99, 108, 153
Psp6I	CCWGG	1 cut(s)	156
PspGI	CCWGG	1 cut(s)	156
PspN4I	GGNNCC	1 cut(s)	17
PspPI	GGNCC	1 cut(s)	36
SaqAI	TTAA	1 cut(s)	74
SatI	GCNGC	3 cut(s)	98, 107, 152
Sau3AI	GATC	1 cut(s)	30
Sau96I	GGNCC	1 cut(s)	36
ScrFI	CCNGG	2 cut(s)	35, 158
SetI	ASST	5 cut(s)	99, 111, 141, 162, 209
SexAI	ACCWGGT	1 cut(s)	156
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
SseBI	AGGCCT	1 cut(s)	128
SsiI	CCGC	4 cut(s)	12, 20, 70, 215
StuI	AGGCCT	1 cut(s)	128
StyD4I	CCNGG	2 cut(s)	33, 156
TaaI	ACNGT	2 cut(s)	49, 227
TaqII	GACCGA	1 cut(s)	131
TfiI	GAWTC	1 cut(s)	181
Tru1I	TTAA	1 cut(s)	74
Tru9I	TTAA	1 cut(s)	74
TscAI	CASTG	1 cut(s)	232
TseI	GCWGC	3 cut(s)	97, 106, 151
TspRI	CASTG	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.