Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0018651

Physical Location & Seq

Genomic Coordinates Reverse (-)

14953620 .. 14953928

Gene Structure 309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG174800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGACGAGGGTGGGAACCTGCTTTTGGTGATCCGGGCCATGATTGCGGTTCGGTTTCTGGAGAGAGTGTCGTTTATGCTGGTGGAGTCATTGGAGCTGCAAAAGCAGCTCGAGACTGACACGAAGGCCTCGCTTGAAGAGAAGGCGGTGTTGTGTGAGGTGGGCGGAGAGAACGGGGGGATTCTGGCGTTGGAGATGGCATGGATGGTGGGAATAACAATGGAGGAGGGTTTGTGGGCAGAGGTGGGTTGTGGGTGGTTGGGCCGGAGCCGTACATGGGCAGGTTACCGCCATTGTTTCCAGGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008174 GO:0008757 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016071 GO:0016422 GO:0016556 GO:0016604 GO:0016607 GO:0016740 GO:0016741 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0034708 GO:0036396 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045293 GO:0046483 GO:0070013 GO:0071704 GO:0080009 GO:0090304 GO:0140098 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MT-A70

Protein Analysis

102

Amino Acids

11.34

Weight (kDa)

4.71

Isoelectric Point (pI)

29.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018651)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000003165
rosa_multiflora	Rmu_sc0000284.1_g000030
rosa_roxburghii	Rroxscaffold_6G00387910
rosa_samantha	Rh1AG022400 Rh2CG255500 Rh2DG023100 Rh3CG251400 Rh6AG285300 Rh7AG388100 Rh7CG174800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	27, 272
AciI	CCGC	4 cut(s)	47, 146, 165, 289
AclWI	GGATC	1 cut(s)	25
AfaI	GTAC	1 cut(s)	274
AfiI	CCNNNNNNNGG	2 cut(s)	25, 277
AgsI	TTSAA	1 cut(s)	137
AjnI	CCWGG	1 cut(s)	300
AjuI	GAANNNNNNNTTGG	2 cut(s)	8, 40
AluBI	AGCT	2 cut(s)	97, 109
AluI	AGCT	2 cut(s)	97, 109
Alw26I	GTCTC	1 cut(s)	107
AlwI	GGATC	1 cut(s)	25
Ama87I	CYCGRG	1 cut(s)	110
AoxI	GGCC	3 cut(s)	36, 126, 262
ApeKI	GCWGC	2 cut(s)	97, 106
AspS9I	GGNCC	2 cut(s)	36, 262
AsuC2I	CCSGG	1 cut(s)	35
AsuHPI	GGTGA	1 cut(s)	40
AvaI	CYCGRG	1 cut(s)	110
BbvI	GCAGC	2 cut(s)	84, 118
BccI	CCATC	2 cut(s)	190, 199
BceAI	ACGGC	1 cut(s)	255
BciT130I	CCWGG	1 cut(s)	302
BcnI	CCSGG	1 cut(s)	35
BcoDI	GTCTC	1 cut(s)	107
BfuAI	ACCTGC	2 cut(s)	27, 272
BisI	GCNGC	2 cut(s)	98, 107
BlsI	GCNGC	2 cut(s)	99, 108
Bme1390I	CCNGG	2 cut(s)	35, 302
BmeT110I	CYCGRG	1 cut(s)	110
BmgT120I	GGNCC	2 cut(s)	36, 262
BmiI	GGNNCC	2 cut(s)	17, 269
BmrFI	CCNGG	2 cut(s)	35, 302
BpmI	CTGGAG	1 cut(s)	80
BpuMI	CCSGG	1 cut(s)	35
BsaJI	CCNNGG	1 cut(s)	301
BsaXI	ACNNNNNCTCC	4 cut(s)	53, 83, 218, 248
Bsc4I	CCNNNNNNNGG	2 cut(s)	25, 277
BseBI	CCWGG	1 cut(s)	302
BseDI	CCNNGG	1 cut(s)	301
BseGI	GGATG	1 cut(s)	210
BseLI	CCNNNNNNNGG	2 cut(s)	25, 277
BseRI	GAGGAG	1 cut(s)	239
BseXI	GCAGC	2 cut(s)	84, 118
BshFI	GGCC	3 cut(s)	38, 128, 264
BsiHKCI	CYCGRG	1 cut(s)	110
BsiSI	CCGG	2 cut(s)	34, 265
BslI	CCNNNNNNNGG	2 cut(s)	25, 277
BsmAI	GTCTC	1 cut(s)	107
BsnI	GGCC	3 cut(s)	38, 128, 264
BsoBI	CYCGRG	1 cut(s)	110
Bsp143I	GATC	1 cut(s)	30
BspACI	CCGC	4 cut(s)	47, 146, 165, 289
BspANI	GGCC	3 cut(s)	38, 128, 264
BspLI	GGNNCC	2 cut(s)	17, 269
BspMI	ACCTGC	2 cut(s)	27, 272
BspPI	GGATC	1 cut(s)	25
BssECI	CCNNGG	1 cut(s)	301
BssMI	GATC	1 cut(s)	30
Bst2UI	CCWGG	1 cut(s)	302
Bst6I	CTCTTC	1 cut(s)	132
BstEII	GGTNACC	1 cut(s)	284
BstF5I	GGATG	1 cut(s)	210
BstKTI	GATC	1 cut(s)	33
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	1 cut(s)	30
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 103, 106
BstNI	CCWGG	1 cut(s)	302
BstPI	GGTNACC	1 cut(s)	284
BstSCI	CCNGG	2 cut(s)	33, 300
BstV1I	GCAGC	2 cut(s)	84, 118
BsuRI	GGCC	3 cut(s)	38, 128, 264
BtsCI	GGATG	1 cut(s)	210
BveI	ACCTGC	2 cut(s)	27, 272
Cfr13I	GGNCC	2 cut(s)	36, 262
Csp6I	GTAC	1 cut(s)	273
CviAII	CATG	3 cut(s)	40, 201, 276
CviJI	RGCY	6 cut(s)	38, 97, 109, 128, 264, 270
CviKI_1	RGCY	6 cut(s)	38, 97, 109, 128, 264, 270
CviQI	GTAC	1 cut(s)	273
DpnI	GATC	1 cut(s)	32
DpnII	GATC	1 cut(s)	30
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
EciI	GGCGGA	1 cut(s)	180
Eco147I	AGGCCT	1 cut(s)	128
Eco88I	CYCGRG	1 cut(s)	110
Eco91I	GGTNACC	1 cut(s)	284
EcoO65I	GGTNACC	1 cut(s)	284
EcoRII	CCWGG	1 cut(s)	300
FaeI	CATG	3 cut(s)	43, 204, 279
FaiI	YATR	4 cut(s)	41, 77, 202, 277
FatI	CATG	3 cut(s)	39, 200, 275
Fnu4HI	GCNGC	2 cut(s)	98, 107
FokI	GGATG	1 cut(s)	217
Fsp4HI	GCNGC	2 cut(s)	98, 107
GluI	GCNGC	2 cut(s)	98, 107
GsuI	CTGGAG	1 cut(s)	80
HaeIII	GGCC	3 cut(s)	38, 128, 264
HapII	CCGG	2 cut(s)	34, 265
Hin1II	CATG	3 cut(s)	43, 204, 279
HinfI	GANTC	2 cut(s)	86, 181
HpaII	CCGG	2 cut(s)	34, 265
HphI	GGTGA	1 cut(s)	40
Hpy188III	TCNNGA	2 cut(s)	59, 112
HpyAV	CCTTC	2 cut(s)	118, 136
HpyCH4V	TGCA	1 cut(s)	100
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 103, 106
Hsp92II	CATG	3 cut(s)	43, 204, 279
Kzo9I	GATC	1 cut(s)	30
LmnI	GCTCC	2 cut(s)	94, 267
LpnPI	CCDG	8 cut(s)	32, 44, 47, 65, 170, 267, 278, 287
Lsp1109I	GCAGC	2 cut(s)	84, 118
MaeIII	GTNAC	1 cut(s)	284
MalI	GATC	1 cut(s)	32
MboI	GATC	1 cut(s)	30
MboII	GAAGA	1 cut(s)	149
MlyI	GAGTC	1 cut(s)	95
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	5 cut(s)	139, 151, 217, 220, 235
MspI	CCGG	2 cut(s)	34, 265
MspR9I	CCNGG	2 cut(s)	35, 302
MvaI	CCWGG	1 cut(s)	302
MwoI	GCNNNNNNNGC	3 cut(s)	44, 103, 106
NciI	CCSGG	1 cut(s)	35
NdeII	GATC	1 cut(s)	30
NlaIII	CATG	3 cut(s)	43, 204, 279
NlaIV	GGNNCC	2 cut(s)	17, 269
PaeR7I	CTCGAG	1 cut(s)	110
PceI	AGGCCT	1 cut(s)	128
PfeI	GAWTC	1 cut(s)	181
PkrI	GCNGC	2 cut(s)	99, 108
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
Psp6I	CCWGG	1 cut(s)	300
PspEI	GGTNACC	1 cut(s)	284
PspGI	CCWGG	1 cut(s)	300
PspN4I	GGNNCC	2 cut(s)	17, 269
PspPI	GGNCC	2 cut(s)	36, 262
RsaI	GTAC	1 cut(s)	274
RsaNI	GTAC	1 cut(s)	273
SatI	GCNGC	2 cut(s)	98, 107
Sau3AI	GATC	1 cut(s)	30
Sau96I	GGNCC	2 cut(s)	36, 262
SchI	GAGTC	1 cut(s)	95
ScrFI	CCNGG	2 cut(s)	35, 302
SetI	ASST	6 cut(s)	21, 99, 111, 162, 246, 286
Sfr274I	CTCGAG	1 cut(s)	110
SlaI	CTCGAG	1 cut(s)	110
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
SseBI	AGGCCT	1 cut(s)	128
SsiI	CCGC	4 cut(s)	47, 146, 165, 289
StuI	AGGCCT	1 cut(s)	128
StyD4I	CCNGG	2 cut(s)	33, 300
TaqI	TCGA	1 cut(s)	111
TfiI	GAWTC	1 cut(s)	181
TseI	GCWGC	2 cut(s)	97, 106
XhoI	CTCGAG	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.